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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050631 ID=TCONS_00050631|Name=TCONS_00050631|organism=Clytia hemisphaerica|type=transcript|length=1262bp
CTCTTATCTAACTTAAagctttcaatatttttcacgcTTACTGATAAGGA
ACATTCCATTCGAGTAAGACAGCAAGATGCTTGATGCATTAAGGAATTGT
CGGGAAGGTgcaaatttggtcaatttttcatctttgcaTGGAATGGTGTA
TGATTATGTTATTGGTGCTGTTCTTGTTTTCATCATGATATCGAACACTC
TGGTCTTGTTTGGTCTCTATCGTACGAACCAACTCGACCGATTCACCAAC
CGCTTATTTTTTGTAATGAGTATCAATGATCTGATTGGAGGAGCAGGCGC
CATTATTGTTTTCTTCGTTAATGTCAACAttccaaatgaaaatgaatgtA
AGATTTTAGGTCTCATTGAAGGATCGGTGTTTATTTTTTTCGCTACCGCT
AGTGGAGTGAATACCACCATTCTGGCGTTCGATCGGCTCGTCTATATTCG
ACATACATTGAAATACAGCCGGCTGTTTTCTACAAAACGGTCAGTGATTT
TCACTCTTATCGCTGTATATGGTTTCAGTACTCTCTGGACGCTCTTAGAA
TTTTTCTGCAATCGGATCTTTCTTTTGGTCGCAGGAACATTGGAAGTTGT
ACATTTGACAATATTTGCGGTCATTAACATCCAACTTCTCCGTTATATCC
GTAAACAAGGTCATCTTATCCGCCGATTATCCAAGAATTTCATCCGAACA
ACTCTGTATCAAACTAGAGCTACGAAGACGGTGCTCCTGGTGACGTTCGT
CTGCTTGTTGACCAACCTTCCGATTTGCGCGTACGCCATCTACATGTACG
TGTCACATACCTGGTACCCAAACACAACAAACTGGACATACTTAGTGTAT
ATATTTTATTGGTCGCTTCTTATTCAACTTTCCAACTCTGGACTAAACGC
CCTGATATTCATATCAAGAAATAAAGCTCTTGTTACACTTTACAGTATTA
AAAGACAAGAAACTAGTGTCAATGGTGAATGACCATGCGTCCACGGTTCC
ATATgctttCAAAATAATTTCTATTTGGCGAACTGTCGTACCTATACGTA
GCCCAGGGCCCACttttagctttttgatagattggatggcgctgataagt
tgCCTTGCGTATTTTGGCAAACTCCATTTTTTGGCTTTGATTGATGTGGT
AGCAAATCCATACAGAAAACAATGATCAATAGACCATTTTTTTCCAGCGT
CCGAGATACAGAAAAgaccttaaaaatggttttcgtaaggcaccccttag
atcagggctaat Run BLAST on NCBI protein sequence of TCONS_00050631-protein >TCONS_00050631-protein ID=TCONS_00050631-protein|Name=TCONS_00050631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MLDALRNCREGANLVNFSSLHGMVYDYVIGAVLVFIMISNTLVLFGLYRT
NQLDRFTNRLFFVMSINDLIGGAGAIIVFFVNVNIPNENECKILGLIEGS
VFIFFATASGVNTTILAFDRLVYIRHTLKYSRLFSTKRSVIFTLIAVYGF
STLWTLLEFFCNRIFLLVAGTLEVVHLTIFAVINIQLLRYIRKQGHLIRR
LSKNFIRTTLYQTRATKTVLLVTFVCLLTNLPICAYAIYMYVSHTWYPNT
TNWTYLVYIFYWSLLIQLSNSGLNALIFISRNKALVTLYSIKRQETSVNG
E Run BLAST on NCBI transcript from alignment at scaffold_18:58536..59797 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050631 ID=TCONS_00050631|Name=TCONS_00050631|organism=Clytia hemisphaerica|type=transcript|length=1262bp|location=Sequence derived from alignment at scaffold_18:58536..59797 (Clytia hemisphaerica)
attagccctgatctaaggggtgccttacgaaaaccatttttaaggtcTTT
TCTGTATCTCGGACGCTGGAAAAAAATGGTCTATTGATCATTGTTTTCTG
TATGGATTTGCTACCACATCAATCAAAGCCAAAAAATGGAGTTTGCCAAA
ATACGCAAGGcaacttatcagcgccatccaatctatcaaaaagctaaaaG
TGGGCCCTGGGCTACGTATAGGTACGACAGTTCGCCAAATAGAAATTATT
TTGaaagcATATGGAACCGTGGACGCATGGTCATTCACCATTGACACTAG
TTTCTTGTCTTTTAATACTGTAAAGTGTAACAAGAGCTTTATTTCTTGAT
ATGAATATCAGGGCGTTTAGTCCAGAGTTGGAAAGTTGAATAAGAAGCGA
CCAATAAAATATATACACTAAGTATGTCCAGTTTGTTGTGTTTGGGTACC
AGGTATGTGACACGTACATGTAGATGGCGTACGCGCAAATCGGAAGGTTG
GTCAACAAGCAGACGAACGTCACCAGGAGCACCGTCTTCGTAGCTCTAGT
TTGATACAGAGTTGTTCGGATGAAATTCTTGGATAATCGGCGGATAAGAT
GACCTTGTTTACGGATATAACGGAGAAGTTGGATGTTAATGACCGCAAAT
ATTGTCAAATGTACAACTTCCAATGTTCCTGCGACCAAAAGAAAGATCCG
ATTGCAGAAAAATTCTAAGAGCGTCCAGAGAGTACTGAAACCATATACAG
CGATAAGAGTGAAAATCACTGACCGTTTTGTAGAAAACAGCCGGCTGTAT
TTCAATGTATGTCGAATATAGACGAGCCGATCGAACGCCAGAATGGTGGT
ATTCACTCCACTAGCGGTAGCGAAAAAAATAAACACCGATCCTTCAATGA
GACCTAAAATCTTacattcattttcatttggaaTGTTGACATTAACGAAG
AAAACAATAATGGCGCCTGCTCCTCCAATCAGATCATTGATACTCATTAC
AAAAAATAAGCGGTTGGTGAATCGGTCGAGTTGGTTCGTACGATAGAGAC
CAAACAAGACCAGAGTGTTCGATATCATGATGAAAACAAGAACAGCACCA
ATAACATAATCATACACCATTCCAtgcaaagatgaaaaattgaccaaatt
tgcACCTTCCCGACAATTCCTTAATGCATCAAGCATCTTGCTGTCTTACT
CGAATGGAATGTTCCTTATCAGTAAgcgtgaaaaatattgaaagctTTAA
GTTAGATAAGAG Coding sequence (CDS) from alignment at scaffold_18:58536..59797 >TCONS_00050631 ID=TCONS_00050631|Name=TCONS_00050631|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_18:58536..59797 (Clytia hemisphaerica)
TCATTCACCATTGACACTAGTTTCTTGTCTTTTAATACTGTAAAGTGTAA
CAAGAGCTTTATTTCTTGATATGAATATCAGGGCGTTTAGTCCAGAGTTG
GAAAGTTGAATAAGAAGCGACCAATAAAATATATACACTAAGTATGTCCA
GTTTGTTGTGTTTGGGTACCAGGTATGTGACACGTACATGTAGATGGCGT
ACGCGCAAATCGGAAGGTTGGTCAACAAGCAGACGAACGTCACCAGGAGC
ACCGTCTTCGTAGCTCTAGTTTGATACAGAGTTGTTCGGATGAAATTCTT
GGATAATCGGCGGATAAGATGACCTTGTTTACGGATATAACGGAGAAGTT
GGATGTTAATGACCGCAAATATTGTCAAATGTACAACTTCCAATGTTCCT
GCGACCAAAAGAAAGATCCGATTGCAGAAAAATTCTAAGAGCGTCCAGAG
AGTACTGAAACCATATACAGCGATAAGAGTGAAAATCACTGACCGTTTTG
TAGAAAACAGCCGGCTGTATTTCAATGTATGTCGAATATAGACGAGCCGA
TCGAACGCCAGAATGGTGGTATTCACTCCACTAGCGGTAGCGAAAAAAAT
AAACACCGATCCTTCAATGAGACCTAAAATCTTacattcattttcatttg
gaaTGTTGACATTAACGAAGAAAACAATAATGGCGCCTGCTCCTCCAATC
AGATCATTGATACTCATTACAAAAAATAAGCGGTTGGTGAATCGGTCGAG
TTGGTTCGTACGATAGAGACCAAACAAGACCAGAGTGTTCGATATCATGA
TGAAAACAAGAACAGCACCAATAACATAATCATACACCATTCCAtgcaaa
gatgaaaaattgaccaaatttgcACCTTCCCGACAATTCCTTAATGCATC
AAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050631-exon-scaffold_18-1491911889:58536..59797 | TCONS_00050631-exon-scaffold_18-1491911889:58536..59797 | Clytia hemisphaerica | exon |
| TCONS_00050631-exon-scaffold_18-1510915933:58536..59797 | TCONS_00050631-exon-scaffold_18-1510915933:58536..59797 | Clytia hemisphaerica | exon |
| TCONS_00050631-exon-scaffold_18-1575043694:58536..59797 | TCONS_00050631-exon-scaffold_18-1575043694:58536..59797 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:58536..59797 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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