TCONS_00050635 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050635
Unique NameTCONS_00050635
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length886

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050635 ID=TCONS_00050635|Name=TCONS_00050635|organism=Clytia hemisphaerica|type=transcript|length=886bp
GGGAGCTTACAAAGAAAGGGGTAAGATTTAAATGGCAAAAGAAACACAAT
GATGCATTCTACTCCCTTATAGAAGCATTCCGTAAGGACGTACTCCTGCG
TTATTTTGACCCAAATGCTAGAACGTTTATTGTTGTTGATGGTCACAAGA
CGGGGCTAGGCGCAATTCTAGCACAAGGTCCGTCTTTAGAAGAAGCGAAA
CCAGTTGCTCTAGCCTCAAGGACAACTAATGATTCTGAGAAACACTGTCC
TCAATTGGATTTAGAAGCTGCTAGCCTTGACTTTGGACTCAGACGATTCC
GTGAATATGTTGTAGGTTTGCCTGCCCTTATCAAGGTGATCACTGATCAC
AAGCCCTTGGTACACATATTCAATGGAAAGCGTTCTGGTTCCATTAGAAC
AAAGCGAATCAAATTGAATCATCATTGTTGAATACCAGAAAGGGTCTCTT
AATCAAGTAGACTACATGAGTCGTCATGGGAGAAAACTTTCCAGTCTTCC
AATTGGCCAGAGAGAAGAATGCAATGACCTCAATAATCTTCTATACGCAC
TTCATATGACACAAGTCGTTGATCACATTTCACTAGCGAGAATCGCTCAG
GAAACCGCTGATGATAAAACACTCAGTCACATTCAAAAATATCTCTGGAA
GGGCTATCAATCAATCCCTAAGAACGTCTCCAAAGAGGTTAAAAGATTTG
GACCTGTTATGTCGGAACTAACCGTTATGGCGAACGGAATAATACTCAAG
GATGATAGAATTGTTCTTCCAGAATCACTACACAAACTAGCTATTGAACT
AGCACACAGGGGATCTCACCCAGGACAAAGTGGAATTGAAAGGAGACTTA
GGTTCCATTTTTTCTTCCATGGAATGTACGATAAGG
Run BLAST on NCBI

protein sequence of TCONS_00050635-protein

>TCONS_00050635-protein ID=TCONS_00050635-protein|Name=TCONS_00050635-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
ELTKKGVRFKWQKKHNDAFYSLIEAFRKDVLLRYFDPNARTFIVVDGHKT
GLGAILAQGPSLEEAKPVALASRTTNDSEKHCPQLDLEAASLDFGLRRFR
EYVVGLPALIKVITDHKPLVHIFNGKRSGSIRTKRIKLNHHC
Run BLAST on NCBI

transcript from alignment at scaffold_18:154737..155622

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050635 ID=TCONS_00050635|Name=TCONS_00050635|organism=Clytia hemisphaerica|type=transcript|length=886bp|location=Sequence derived from alignment at scaffold_18:154737..155622 (Clytia hemisphaerica)
CCTTATCGTACATTCCATGGAAGAAAAAATGGAACCTAAGTCTCCTTTCA
ATTCCACTTTGTCCTGGGTGAGATCCCCTGTGTGCTAGTTCAATAGCTAG
TTTGTGTAGTGATTCTGGAAGAACAATTCTATCATCCTTGAGTATTATTC
CGTTCGCCATAACGGTTAGTTCCGACATAACAGGTCCAAATCTTTTAACC
TCTTTGGAGACGTTCTTAGGGATTGATTGATAGCCCTTCCAGAGATATTT
TTGAATGTGACTGAGTGTTTTATCATCAGCGGTTTCCTGAGCGATTCTCG
CTAGTGAAATGTGATCAACGACTTGTGTCATATGAAGTGCGTATAGAAGA
TTATTGAGGTCATTGCATTCTTCTCTCTGGCCAATTGGAAGACTGGAAAG
TTTTCTCCCATGACGACTCATGTAGTCTACTTGATTAAGAGACCCTTTCT
GGTATTCAACAATGATGATTCAATTTGATTCGCTTTGTTCTAATGGAACC
AGAACGCTTTCCATTGAATATGTGTACCAAGGGCTTGTGATCAGTGATCA
CCTTGATAAGGGCAGGCAAACCTACAACATATTCACGGAATCGTCTGAGT
CCAAAGTCAAGGCTAGCAGCTTCTAAATCCAATTGAGGACAGTGTTTCTC
AGAATCATTAGTTGTCCTTGAGGCTAGAGCAACTGGTTTCGCTTCTTCTA
AAGACGGACCTTGTGCTAGAATTGCGCCTAGCCCCGTCTTGTGACCATCA
ACAACAATAAACGTTCTAGCATTTGGGTCAAAATAACGCAGGAGTACGTC
CTTACGGAATGCTTCTATAAGGGAGTAGAATGCATCATTGTGTTTCTTTT
GCCATTTAAATCTTACCCCTTTCTTTGTAAGCTCCC

Coding sequence (CDS) from alignment at scaffold_18:154737..155622

>TCONS_00050635 ID=TCONS_00050635|Name=TCONS_00050635|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_18:154737..155622 (Clytia hemisphaerica)
TCAACAATGATGATTCAATTTGATTCGCTTTGTTCTAATGGAACCAGAAC
GCTTTCCATTGAATATGTGTACCAAGGGCTTGTGATCAGTGATCACCTTG
ATAAGGGCAGGCAAACCTACAACATATTCACGGAATCGTCTGAGTCCAAA
GTCAAGGCTAGCAGCTTCTAAATCCAATTGAGGACAGTGTTTCTCAGAAT
CATTAGTTGTCCTTGAGGCTAGAGCAACTGGTTTCGCTTCTTCTAAAGAC
GGACCTTGTGCTAGAATTGCGCCTAGCCCCGTCTTGTGACCATCAACAAC
AATAAACGTTCTAGCATTTGGGTCAAAATAACGCAGGAGTACGTCCTTAC
GGAATGCTTCTATAAGGGAGTAGAATGCATCATTGTGTTTCTTTTGCCAT
TTAAATCTTACCCCTTTCTTTGTAAGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032076XLOC_032076Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050635-proteinTCONS_00050635-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050635-exon-scaffold_18-1491911889:154737..155622TCONS_00050635-exon-scaffold_18-1491911889:154737..155622Clytia hemisphaericaexon
TCONS_00050635-exon-scaffold_18-1510915933:154737..155622TCONS_00050635-exon-scaffold_18-1510915933:154737..155622Clytia hemisphaericaexon
TCONS_00050635-exon-scaffold_18-1575043694:154737..155622TCONS_00050635-exon-scaffold_18-1575043694:154737..155622Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:154737..155622 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.301527	0.518837	0.834388	0.82586	0.883115	0.497692	0.2085	0.894204	0	0.713732	0.747257	0.342276	0.486974	0.593493	0.518022	0.159187	0.520469	0.270185	0.58755	0.162119	0.267762	0.266166	0.137463	0	0.695725	0.401945	0.967415	0.66991	0.573931	0.392818
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050635 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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