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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050636 ID=TCONS_00050636|Name=TCONS_00050636|organism=Clytia hemisphaerica|type=transcript|length=950bp
CCAATCAACATCCTGCTTTTTCTGTGGAATAACAGGCAAGAAACAAGATA
TCGTCGTACATGCTAAACAATGCCCAGCAAGAGCATCTGTTTGTAGCAAA
TGCAACAAAACTGGCCACTATGCAAAAGTATGTAAAATTAGACCAGCAAG
GAAGGAAATGGAAATCAATGAGGTAGAAGAATCGACTTCAACTGATGAGG
AATCTCAAGTGTATAATGTAAATCTATTCAGAATCAACAATTCAAAGAAT
AGGACATATACAGAAgattttagaacaaatatcCTCATTAACAACCATCT
AGACACTGTATTAGCCGATACAGGGGCAGGAATCTCAGTGTGTAGCATGG
AAACAGCTAAAAAATGGAATATCCTAGACAGAATGAGTAAAACAAATCTC
AGAATAAAGCCATACAAAAGCAAACCGATACCAGCAATTGGAGTTAGTCG
ATGTAGTGTTTCATTCGGTGACAGGACGGTTCCACTTCAATGGTACATCA
TAAAAGAGCCATGTGAATCCATACTTTCCGGTGCGATGGCAACCCAATTG
AATATTGTAAGCTTCAACAACCAACCTGAAGTACTTACACCTGTCAGAAT
GATCCATCTCACAGATCATTTACTGAAAGAAAATCTACAAGACATCATTA
CTAAGAGGACACCAATTTTCAATGGAATCGGTAAGTTAAAAAACTATCTT
GTCAAGCTTCCTGCCAATCCAAACATTAAGGCGGTTGCAGAACCTCCTAG
GAGAATTCCTTATCACCTTAAAAGTCGTGTGGAGGAGGTcataaatgaaa
tgaaaaccCAAGATGTTATTGAAGAACTCCCTGCAGGTCAACAGACCCCA
TGGATTTCCAATGTAGTGATAGCCCCTAAAGACGATGGCAACATTCGCAT
AACCCTTGATGCCAAGAACCTAAATAAGGCGCTTCTTTCATCAAACTTCC Run BLAST on NCBI protein sequence of TCONS_00050636-protein >TCONS_00050636-protein ID=TCONS_00050636-protein|Name=TCONS_00050636-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
QSTSCFFCGITGKKQDIVVHAKQCPARASVCSKCNKTGHYAKVCKIRPAR
KEMEINEVEESTSTDEESQVYNVNLFRINNSKNRTYTEDFRTNILINNHL
DTVLADTGAGISVCSMETAKKWNILDRMSKTNLRIKPYKSKPIPAIGVSR
CSVSFGDRTVPLQWYIIKEPCESILSGAMATQLNIVSFNNQPEVLTPVRM
IHLTDHLLKENLQDIITKRTPIFNGIGKLKNYLVKLPANPNIKAVAEPPR
RIPYHLKSRVEEVINEMKTQDVIEELPAGQQTPWISNVVIAPKDDGNIRI
TLDAKNLNKALLSSNF Run BLAST on NCBI transcript from alignment at scaffold_18:156308..157257 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050636 ID=TCONS_00050636|Name=TCONS_00050636|organism=Clytia hemisphaerica|type=transcript|length=950bp|location=Sequence derived from alignment at scaffold_18:156308..157257 (Clytia hemisphaerica)
GGAAGTTTGATGAAAGAAGCGCCTTATTTAGGTTCTTGGCATCAAGGGTT
ATGCGAATGTTGCCATCGTCTTTAGGGGCTATCACTACATTGGAAATCCA
TGGGGTCTGTTGACCTGCAGGGAGTTCTTCAATAACATCTTGggttttca
tttcatttatgACCTCCTCCACACGACTTTTAAGGTGATAAGGAATTCTC
CTAGGAGGTTCTGCAACCGCCTTAATGTTTGGATTGGCAGGAAGCTTGAC
AAGATAGTTTTTTAACTTACCGATTCCATTGAAAATTGGTGTCCTCTTAG
TAATGATGTCTTGTAGATTTTCTTTCAGTAAATGATCTGTGAGATGGATC
ATTCTGACAGGTGTAAGTACTTCAGGTTGGTTGTTGAAGCTTACAATATT
CAATTGGGTTGCCATCGCACCGGAAAGTATGGATTCACATGGCTCTTTTA
TGATGTACCATTGAAGTGGAACCGTCCTGTCACCGAATGAAACACTACAT
CGACTAACTCCAATTGCTGGTATCGGTTTGCTTTTGTATGGCTTTATTCT
GAGATTTGTTTTACTCATTCTGTCTAGGATATTCCATTTTTTAGCTGTTT
CCATGCTACACACTGAGATTCCTGCCCCTGTATCGGCTAATACAGTGTCT
AGATGGTTGTTAATGAGgatatttgttctaaaatcTTCTGTATATGTCCT
ATTCTTTGAATTGTTGATTCTGAATAGATTTACATTATACACTTGAGATT
CCTCATCAGTTGAAGTCGATTCTTCTACCTCATTGATTTCCATTTCCTTC
CTTGCTGGTCTAATTTTACATACTTTTGCATAGTGGCCAGTTTTGTTGCA
TTTGCTACAAACAGATGCTCTTGCTGGGCATTGTTTAGCATGTACGACGA
TATCTTGTTTCTTGCCTGTTATTCCACAGAAAAAGCAGGATGTTGATTGG
Coding sequence (CDS) from alignment at scaffold_18:156308..157257 >TCONS_00050636 ID=TCONS_00050636|Name=TCONS_00050636|organism=Clytia hemisphaerica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_18:156308..157257 (Clytia hemisphaerica)
GAAGTTTGATGAAAGAAGCGCCTTATTTAGGTTCTTGGCATCAAGGGTTA
TGCGAATGTTGCCATCGTCTTTAGGGGCTATCACTACATTGGAAATCCAT
GGGGTCTGTTGACCTGCAGGGAGTTCTTCAATAACATCTTGggttttcat
ttcatttatgACCTCCTCCACACGACTTTTAAGGTGATAAGGAATTCTCC
TAGGAGGTTCTGCAACCGCCTTAATGTTTGGATTGGCAGGAAGCTTGACA
AGATAGTTTTTTAACTTACCGATTCCATTGAAAATTGGTGTCCTCTTAGT
AATGATGTCTTGTAGATTTTCTTTCAGTAAATGATCTGTGAGATGGATCA
TTCTGACAGGTGTAAGTACTTCAGGTTGGTTGTTGAAGCTTACAATATTC
AATTGGGTTGCCATCGCACCGGAAAGTATGGATTCACATGGCTCTTTTAT
GATGTACCATTGAAGTGGAACCGTCCTGTCACCGAATGAAACACTACATC
GACTAACTCCAATTGCTGGTATCGGTTTGCTTTTGTATGGCTTTATTCTG
AGATTTGTTTTACTCATTCTGTCTAGGATATTCCATTTTTTAGCTGTTTC
CATGCTACACACTGAGATTCCTGCCCCTGTATCGGCTAATACAGTGTCTA
GATGGTTGTTAATGAGgatatttgttctaaaatcTTCTGTATATGTCCTA
TTCTTTGAATTGTTGATTCTGAATAGATTTACATTATACACTTGAGATTC
CTCATCAGTTGAAGTCGATTCTTCTACCTCATTGATTTCCATTTCCTTCC
TTGCTGGTCTAATTTTACATACTTTTGCATAGTGGCCAGTTTTGTTGCAT
TTGCTACAAACAGATGCTCTTGCTGGGCATTGTTTAGCATGTACGACGAT
ATCTTGTTTCTTGCCTGTTATTCCACAGAAAAAGCAGGATGTTGATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050636-exon-scaffold_18-1491911889:156308..157257 | TCONS_00050636-exon-scaffold_18-1491911889:156308..157257 | Clytia hemisphaerica | exon |
| TCONS_00050636-exon-scaffold_18-1510915933:156308..157257 | TCONS_00050636-exon-scaffold_18-1510915933:156308..157257 | Clytia hemisphaerica | exon |
| TCONS_00050636-exon-scaffold_18-1575043694:156308..157257 | TCONS_00050636-exon-scaffold_18-1575043694:156308..157257 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:156308..157257 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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