TCONS_00050637 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050637
Unique NameTCONS_00050637
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050637 ID=TCONS_00050637|Name=TCONS_00050637|organism=Clytia hemisphaerica|type=transcript|length=474bp
ataaaattgaaaatcgaaaaaacaaaaacgaatcaacaaaaccaaacacA
GCAACAGATCAAATAAAATATTGAGATTGGAAACGAGATTGAAATTTGCT
CCATAGATAAGAATGCAACCATAAAAGACATCAAGTGTTACATTGGCGTC
ACCAGGCATGCATGTTCCACTGGAGACATTATTACTAATCGAACAAAACT
TCCAAGCGTCATATCTTAGTATTCTGATTCCGAGCGTCATTCATTTTTCC
TTATTCCTTCCGACGAGTCCTTCTTACCGTATCTGTTCCAGTTGttagtt
atttatatattttatacacacagcatatacattatataacacttttcttg
taagaagaaccaatatttttggagatcaaggaaataatgtttaaaaaaga
TGTATAAGTCAACAGCTTTGGATAAGAATGTAACCGATGAAACAGATGAG
AACCCTTTtctatcaaaaaatttt
Run BLAST on NCBI

transcript from alignment at scaffold_18:203855..204328

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050637 ID=TCONS_00050637|Name=TCONS_00050637|organism=Clytia hemisphaerica|type=transcript|length=474bp|location=Sequence derived from alignment at scaffold_18:203855..204328 (Clytia hemisphaerica)
aaaattttttgatagaAAAGGGTTCTCATCTGTTTCATCGGTTACATTCT
TATCCAAAGCTGTTGACTTATACAtcttttttaaacattatttccttgat
ctccaaaaatattggttcttcttacaagaaaagtgttatataatgtatat
gctgtgtgtataaaatatataaataactaaCAACTGGAACAGATACGGTA
AGAAGGACTCGTCGGAAGGAATAAGGAAAAATGAATGACGCTCGGAATCA
GAATACTAAGATATGACGCTTGGAAGTTTTGTTCGATTAGTAATAATGTC
TCCAGTGGAACATGCATGCCTGGTGACGCCAATGTAACACTTGATGTCTT
TTATGGTTGCATTCTTATCTATGGAGCAAATTTCAATCTCGTTTCCAATC
TCAATATTTTATTTGATCTGTTGCTgtgtttggttttgttgattcgtttt
tgttttttcgattttcaattttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032078XLOC_032078Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050637-exon-scaffold_18-1491911889:203855..204328TCONS_00050637-exon-scaffold_18-1491911889:203855..204328Clytia hemisphaericaexon
TCONS_00050637-exon-scaffold_18-1510915933:203855..204328TCONS_00050637-exon-scaffold_18-1510915933:203855..204328Clytia hemisphaericaexon
TCONS_00050637-exon-scaffold_18-1575043694:203855..204328TCONS_00050637-exon-scaffold_18-1575043694:203855..204328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:203855..204328 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.535513	0.554366	1.13561	1.33471	2.34705	1.284	2.92607	3.06163	3.72295	3.91277	3.33972	3.03151	4.00672	2.21921	0.424742	0.632569	0.904517	0.309034	1.8501	1.34031	0.129441	1.70469	0	0.139556	0.718696	0.769703	0	0.783659	0.148594	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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