TCONS_00050639 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050639
Unique NameTCONS_00050639
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050639 ID=TCONS_00050639|Name=TCONS_00050639|organism=Clytia hemisphaerica|type=transcript|length=310bp
tttaaagtgTGTAAAGAGCCTTTGCTTGGTCGTGGCTCAGCTGCTACATC
CGTGTGTAGCGGTGCAGCTCCGGACGCAGCATGTAGCAAAACCAATTGTG
CTGATGTCCGGCTTGGTGTTAGTCACCCCTGGTGGTGTGGTTCAATGCAA
GATGAATGGTTCACTGTTTATTTCAATGATGTTACACGTATCACGGGTTT
TCACGTGCAAGCTGCATCTCAGAGAGCTCTTGTCCAATTCAGCTTGATGT
ATAGTGTGACGAGGACAGATGATGGTTTAAAGTTTTATGGAACCTCACAA
GATACCGTGA
Run BLAST on NCBI

protein sequence of TCONS_00050639-protein

>TCONS_00050639-protein ID=TCONS_00050639-protein|Name=TCONS_00050639-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
FKVCKEPLLGRGSAATSVCSGAAPDAACSKTNCADVRLGVSHPWWCGSMQ
DEWFTVYFNDVTRITGFHVQAASQRALVQFSLMYSVTRTDDGLKFYGTSQ
DTV
Run BLAST on NCBI

transcript from alignment at scaffold_18:272178..272487

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050639 ID=TCONS_00050639|Name=TCONS_00050639|organism=Clytia hemisphaerica|type=transcript|length=310bp|location=Sequence derived from alignment at scaffold_18:272178..272487 (Clytia hemisphaerica)
TCACGGTATCTTGTGAGGTTCCATAAAACTTTAAACCATCATCTGTCCTC
GTCACACTATACATCAAGCTGAATTGGACAAGAGCTCTCTGAGATGCAGC
TTGCACGTGAAAACCCGTGATACGTGTAACATCATTGAAATAAACAGTGA
ACCATTCATCTTGCATTGAACCACACCACCAGGGGTGACTAACACCAAGC
CGGACATCAGCACAATTGGTTTTGCTACATGCTGCGTCCGGAGCTGCACC
GCTACACACGGATGTAGCAGCTGAGCCACGACCAAGCAAAGGCTCTTTAC
Acactttaaa

Coding sequence (CDS) from alignment at scaffold_18:272178..272487

>TCONS_00050639 ID=TCONS_00050639|Name=TCONS_00050639|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_18:272178..272487 (Clytia hemisphaerica)
CACGGTATCTTGTGAGGTTCCATAAAACTTTAAACCATCATCTGTCCTCG
TCACACTATACATCAAGCTGAATTGGACAAGAGCTCTCTGAGATGCAGCT
TGCACGTGAAAACCCGTGATACGTGTAACATCATTGAAATAAACAGTGAA
CCATTCATCTTGCATTGAACCACACCACCAGGGGTGACTAACACCAAGCC
GGACATCAGCACAATTGGTTTTGCTACATGCTGCGTCCGGAGCTGCACCG
CTACACACGGATGTAGCAGCTGAGCCACGACCAAGCAAAGGCTCTTTACA
cactttaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032080XLOC_032080Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050639-exon-scaffold_18-1491911889:272178..272487TCONS_00050639-exon-scaffold_18-1491911889:272178..272487Clytia hemisphaericaexon
TCONS_00050639-exon-scaffold_18-1510915933:272178..272487TCONS_00050639-exon-scaffold_18-1510915933:272178..272487Clytia hemisphaericaexon
TCONS_00050639-exon-scaffold_18-1575043694:272178..272487TCONS_00050639-exon-scaffold_18-1575043694:272178..272487Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050639-proteinTCONS_00050639-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:272178..272487 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.34239	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.263579	0.54032	0	0	2.43016	1.0049	0.402579	0.366003	1.13092	0.33644	0.481445	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like
IPR000421FA58C
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050639 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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