TCONS_00050646 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050646
Unique NameTCONS_00050646
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050646 ID=TCONS_00050646|Name=TCONS_00050646|organism=Clytia hemisphaerica|type=transcript|length=470bp
ACATGCTTCTTTTGTTCTACTATTGTATTCAAGTGCATACTCGTcgttag
ttaaaccaaagtttaaaatgGAATCGCCTTctggttttaaaaaaaaattt
ttacaatCTTGTTAGTTTTCTGAAAAggtgaaatcaaaatttccaagtga
aaagCGTGCTTCTTTGTtaattataaaagaaaaatatgagaGCTAATGGT
TAGATTTGCTCGGAGTAGGTTTAGTAGTTAAGGCTATAACGAGCATAAAT
CAGTATTTTACAGAGAGATTCCCGGGGAGTTCATCTCCTTAGAGAGATCT
TGACAAGATTTCTAGTTTGAAAGGAGGATTCCCTGAGACATTTAATCGAT
GATACCAAAAGAAAGAAATCAGAACTGAATTCCCACATCAACTTAATACT
ATTTACTTAAATTTTCTGGTCTGAacACGGCCAAGGTGAAAGAATAATAA
Caccaaacaataacaaaaag
Run BLAST on NCBI

transcript from alignment at scaffold_180:77511..78361-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050646 ID=TCONS_00050646|Name=TCONS_00050646|organism=Clytia hemisphaerica|type=transcript|length=851bp|location=Sequence derived from alignment at scaffold_180:77511..78361- (Clytia hemisphaerica)
ACATGCTTCTTTTGTTCTACTATTGTATTCAAGTGCATACTCGTCGTTAG
TTAAACCAAAGTTTAAAATGGAATCGCCTTCTGGTTTTAAAAAAAAATTT
TTACAATCTTGTTAGTTTTCTGAAAAGGTGAAATCAAAATTTCCAAGTGA
AAAGCGTGCTTCTTTGTTAATTATAAAAGAAAAATATGAGAGCTAATGGT
TAGATTTGCTCGGAGTAGGTTTAGTAGTTAAGGCTATAACGAGCATAAAT
CAGTATTTTACAGAGAGATTCCCGGGGAGTTCATCTCCTTAGAGAGATCT
TGACAAGATTTCTAGTTTGAAAGGAGGATTCCCTGAGACATTTAATCGAT
GATACCAAAAGAAAGAAATCAGAACTGAATTCCCACATCAACTTAATACT
ATTTACTTAAATTTTCTGGTCTGAACATAGACTAGAGTCTACTTCTGGCT
GAACTTTGCTTTTTGATGATTTTTTATGACGCTGAGTCCAGTGAAGTAGA
CTAGGAGCATTTGGCGAGGTCGCCATTTTGAAAAAAAAAATTTGAAATCC
AAATAACACAAAATCTACTCGAAGTTGAAAAACATAATTAAGTATGGGAA
GCAAACATCAATAACAGATTTTGAATCACTTATTTTCAAATAAAAACATT
ACTTTGTTCTTTTTTTACCTGGCAAAAACGACAAAAATCTGGCGGACTGT
TTTACAGTCCGCCTAGGCAAAACCATATTACCATATACTACCGGGCCACT
TATCAGCGCCAAAAAGACCATAAAAAAGCTCTAAGTGGACCCCGGGCTAG
TCTGAACACGGCCAAGGTGAAAGAATAATAACACCAAACAATAACAAAAA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032085XLOC_032085Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050646-exon-scaffold_180-1575043694:77936..78361TCONS_00050646-exon-scaffold_180-1575043694:77936..78361Clytia hemisphaericaexon
TCONS_00050646-exon-scaffold_180-1575043694:77511..77554TCONS_00050646-exon-scaffold_180-1575043694:77511..77554Clytia hemisphaericaexon
TCONS_00050646-exon-scaffold_180-1510915933:77936..78361TCONS_00050646-exon-scaffold_180-1510915933:77936..78361Clytia hemisphaericaexon
TCONS_00050646-exon-scaffold_180-1510915933:77511..77554TCONS_00050646-exon-scaffold_180-1510915933:77511..77554Clytia hemisphaericaexon
TCONS_00050646-exon-scaffold_180-1491911889:77936..78361TCONS_00050646-exon-scaffold_180-1491911889:77936..78361Clytia hemisphaericaexon
TCONS_00050646-exon-scaffold_180-1491911889:77511..77554TCONS_00050646-exon-scaffold_180-1491911889:77511..77554Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_180supercontigscaffold_180:77511..78361 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.160006	0	0	0	0	0	0	0	0	0	0	0	0	0.296569	0	0	0	0	0	0.265642	0.503472	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050646 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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