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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050649 ID=TCONS_00050649|Name=TCONS_00050649|organism=Clytia hemisphaerica|type=transcript|length=1162bp
cccctcttttttgcttccCCCCTAGCTATTTGATGATTTCGCGGTTCCcc
ccatatggttaacataaaaatgccttaaatcaagtttgaaattttggaaa
gcttgaaaatatagccttgaaactgcttgaaaagtaaagttatattgaaa
agttggtttgGTCCAAGAAGATTCGCTGATTTTATTGATTAAGCAGGTCT
TGCACGAGATCACCTTCagatcagtgaagttcccccGATCAATATCGTTT
TCCCCATTGTATGGAAAATTGTCTCCCCTTCAAGAGACATCTCCCAAACA
GGAGGAGTCTCCCAATCGAGGGTATTTTGGCCTATTGTCCATAACGTCCA
CCCGCACCNTTTTCCGAAATATATGGTTTTCCCCATTGTATGGAAAATTG
TCTCCCCTTCAAGAGACATCTCCCAAACAGGAGGAGTCTCCCAATCGAGG
GTATTTTGGCCTATTGTCCATAACGTCCACCCGCTCCCGACTTACAGAAG
CGATTTTAAAAAACCCAGGAATTTTTTCGACCGCCTGCATGCATTGGGTT
GTTgcagaaaaaaacattatccCCTATTGAATTACATTTGTTACATAATT
CCAACCAACTTTTAAGCAAAAGTTATCGGAATTCCATAAATTTCACCCAA
TTTTGTGGCTAAAGTATCTGAATTCCACAATTCTTTAgggattttttgga
ttttccaACGGAAATTCCACAACTTTTTCCAAACTTTTTGCTACAGAAAT
TCGATGTCGTCAACTAGGGCTAGGGGGTAATGAACTAAAACTATTTTTAA
CACctgttgcgacgcgaacagaacaatttttccaTGGCCgccctacacag
gatttcggccactTACGAAAAGATCCTCCTATAAGATGGGAATAGGattg
tgtaggtaggccaagcagtgtttgCAAAGCATCACCATAGATTAATAAGA
TGTTATAAAGAGGTGTGTTTGTTGCTAGAAATTTTAGTAAATATATATAT
AGTTGTATAGATCTTCTATTTAGGAAAATATCTGCAATGAAGAATTATAT
aaactaatttggtcttctcccTCCACCTACCCTTTTTCTGGTGTTCCCTC
CATTGAAAGAACTATTTTGTGACCAACCGATCCCACTATATTTTTCATAA
TAacttaaacaa Run BLAST on NCBI transcript from alignment at scaffold_180:83144..84305 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050649 ID=TCONS_00050649|Name=TCONS_00050649|organism=Clytia hemisphaerica|type=transcript|length=1162bp|location=Sequence derived from alignment at scaffold_180:83144..84305 (Clytia hemisphaerica)
ttgtttaagtTATTATGAAAAATATAGTGGGATCGGTTGGTCACAAAATA
GTTCTTTCAATGGAGGGAACACCAGAAAAAGGGTAGGTGGAgggagaaga
ccaaattagtttATATAATTCTTCATTGCAGATATTTTCCTAAATAGAAG
ATCTATACAACTATATATATATTTACTAAAATTTCTAGCAACAAACACAC
CTCTTTATAACATCTTATTAATCTATGGTGATGCTTTGcaaacactgctt
ggcctacctacacaatCCTATTCCCATCTTATAGGAGGATCTTTTCGTAa
gtggccgaaatcctgtgtagggcGGCCAtggaaaaattgttctgttcgcg
tcgcaacagGTGTTAAAAATAGTTTTAGTTCATTACCCCCTAGCCCTAGT
TGACGACATCGAATTTCTGTAGCAAAAAGTTTGGAAAAAGTTGTGGAATT
TCCGTtggaaaatccaaaaaatcccTAAAGAATTGTGGAATTCAGATACT
TTAGCCACAAAATTGGGTGAAATTTATGGAATTCCGATAACTTTTGCTTA
AAAGTTGGTTGGAATTATGTAACAAATGTAATTCAATAGGggataatgtt
tttttctgcAACAACCCAATGCATGCAGGCGGTCGAAAAAATTCCTGGGT
TTTTTAAAATCGCTTCTGTAAGTCGGGAGCGGGTGGACGTTATGGACAAT
AGGCCAAAATACCCTCGATTGGGAGACTCCTCCTGTTTGGGAGATGTCTC
TTGAAGGGGAGACAATTTTCCATACAATGGGGAAAACCATATATTTCGGA
AAANGGTGCGGGTGGACGTTATGGACAATAGGCCAAAATACCCTCGATTG
GGAGACTCCTCCTGTTTGGGAGATGTCTCTTGAAGGGGAGACAATTTTCC
ATACAATGGGGAAAACGATATTGATCgggggaacttcactgatctGAAGG
TGATCTCGTGCAAGACCTGCTTAATCAATAAAATCAGCGAATCTTCTTGG
ACcaaaccaacttttcaatataactttacttttcaagcagtttcaaggct
atattttcaagctttccaaaatttcaaacttgatttaaggcatttttatg
ttaaccatatggggGGAACCGCGAAATCATCAAATAGCTAGGGGggaagc
aaaaaagagggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050649-exon-scaffold_180-1491911889:83144..84305 | TCONS_00050649-exon-scaffold_180-1491911889:83144..84305 | Clytia hemisphaerica | exon |
| TCONS_00050649-exon-scaffold_180-1510915933:83144..84305 | TCONS_00050649-exon-scaffold_180-1510915933:83144..84305 | Clytia hemisphaerica | exon |
| TCONS_00050649-exon-scaffold_180-1575043694:83144..84305 | TCONS_00050649-exon-scaffold_180-1575043694:83144..84305 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_180 | supercontig | scaffold_180:83144..84305 . |
Blast
The following BLAST results are available for this feature:
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