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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050653 ID=TCONS_00050653|Name=TCONS_00050653|organism=Clytia hemisphaerica|type=transcript|length=213bp
TCAGGACCATGAGTGCAAGCAAGTCTTTTCCTCGCCAGGATGATAAATGG
AACGCCAGTAAATGGGATTTCTTGCGgGATCGATGACATTCCCATTTTCA
GCAATCAAAGACGGCTCCTCTGGATGTTTGAGAATCTTCTGTTGTATCTG
ATGCCCAAGATATCGAATCGGATGATGTTGGTGATCTTTCCGATTGAGCC
AACAATACTGGAG Run BLAST on NCBI transcript from alignment at scaffold_181:1041..3649- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050653 ID=TCONS_00050653|Name=TCONS_00050653|organism=Clytia hemisphaerica|type=transcript|length=2609bp|location=Sequence derived from alignment at scaffold_181:1041..3649- (Clytia hemisphaerica)
TCAGGACCATGAGTGCAAGCAAGTCTTTTCCTCGCCAGGATGATAAATGG
AACGCCAGTAAATGGGATTTCTTGCGGGTGATTTTTGGACCTACCGGGAG
GTCCTTTAATTTGACCGCTGTCCGTTCGTCTGTTACAAGCTTTTCTCGGG
ATTGGCTCATCAGTTTTTTTTAATTTTTTGCACAATGATACAAAATGGCA
ATGCCTGAAAAGTGACGGAGCCTGATTTTTGAAAAAAAATTTTGGGGGGC
AAATTTGGGCCAAAACTACCTAAAAATAAGGTTTTTTGGACTTGGTGCAA
AATTGCTTCATCAGTTTTTCCTGATTTTTGGCAGAAAGATAGAGTGCAAG
GGACTCTAAAACGTGGCTGAAGTAATTTTTCTCGTAAAATTTTTTTTCAT
CGTCAAATACGGATTTTCGCAAATTTGGGCCAAAACTACCTAAAAATAAG
GTTTTTTGGACTTGGTGCAAAATTGCTTCATCAGTTTTTCCTGATTTTTG
GCAGAAAGATAGAGTGCAAGGGACTCTAAAACGTGGCTGAAGTAATTTTT
CTCGTAAAATTTTTTTTCATCGTCAAATACGGATTTTCGCAAATTTGGGC
CAAAACTACCTAAAAATAAGGTTTTTTGGACTTGGTGCAAAATTGCTTCA
TCAGTTTTTCCTGATTTTTGGCAGAAAGATAGAGTGCAAGGGACTCTAAA
ACGTGGCTGAAGTAATTTTTCTCGTAAAATTTTTTTTCATCGTCAAATAC
GGATTTTCGCAAATTTGGGCCAAAACTACCTAAAAATAAGGTTTTTTGGA
CTTGGTGCAAAATTGCTTCATCAGTTTTTCCTGATTTTTGGCAGAAAGAT
AGAGTGCAAGGGACTCTAAAACGTGGCTGAAGTAATTTTTCTCGTAAAAT
TTTTTTTCATCGTCAAATACGGATTTTCGCAAATTTGGGCCAAAAACTAC
CTAAAAAAAAGGTTTTTAGGGCTTTGTGCAAAATTGCTTCATTAGTTTTT
CCTGATTTTTGGCAGAAAGATAGAGTGCAAGGTACTCTAAAACGTGGCTG
AAGTAATTTTTCTCGTAAAATTTTTTTTCATCGTCAAATACGGATTTTCG
CAAATTTGGGCCAAAAACTACCTAAAAATAAGGTTTTTTGGACTTGGTGC
AAAATTGCTTCATTAGTTTTTCCTGATTTTTGGCAGAAAGATAGAGTGCA
AGGTACCCTAAAATGTGGCTAAAGTAATTTTTCTCGGAAAATTTTTTTTC
GTCGTAAAATACGGATTTTCGTTTTTTTGGGGAAATTCCCTTTTACCATT
TTCCTGTAAGCAGCCTTTCTCGGGATTGGCTCATTAGTTTTTTTTTATTT
TTTGCACAATGATACAAAATAGCAATGCCTGAAAAGTGACGGAGCCTGAT
TTTTGAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAAATTGCTTCATTAGTTTTTCCTGATTTTTGGCAAAAAG
ATAGAGTGCAAGGTACCCTAAAATGTGGCTGAAGTAATTTTTCTCGGAAA
ATTTTTTTTCGTCCTCAAATACGGATTTTCGCAAATTTGGGCCAAAAACT
ACCTAAAAATAAGGTTTTTTGGACTTGGTGCAAAATTGCTTCATTATTTT
TTCCTGATTTTTGGCAGAAAGATAGAGTGCAAGGTACTTTAAAATGTGGT
TGAAGTAATTTTTCTCGGAAAATTTTTTTTCGTCATAAAATTTTCAAAAA
AAGACGACCAAGTTACACAATGATGACTTATCGTGTTTGCTCAATTCCAA
TAGTAAAATGTAGAATACCTACTTTTATCTGATTTTGATCAACAGGTAGG
TCCATTTAGCATGTTGCTTGTTATTTTTGACATCTTCAAATGAAATTTTG
TGTCCCTCCTGATCAAAATCTATGAAAAGTCAAATATATAAAGGATAAAG
GGTTCAAATTTACAAAATGCATACATAACCGCTTGAATAAGAAGTCAAAA
TCTAGTGTAGCATCGAGTTACAAACTATCTTACCTTCCTTTCTATAAGAT
AACTTTTCTGCACGGGACACAAACTTTGTGTTTGTTTCGATCTCGAGGTT
TTCAATTGCCATCTCAGCTTCCTTGTCATCTCTGAAAACTCTTACTCTTC
CTTAAATGGAATAATGATAAAAATCATTTGAGATTTATTTCCAGCAATTT
GATTCAAATTCATCAGAAATACAGTGGAGTGAGAAGAAATACATTAAACG
TAGAATCGTAGATAAAACCTATTCATTCTAATACCTTACATATTTTGAGG
AATATTTTCATTCTCTTCTTCAGGATCGATGACATTCCCATTTTCAGCAA
TCAAAGACGGCTCCTCTGGATGTTTGAGAATCTTCTGTTGTATCTGATGC
CCAAGATATCGAATCGGATGATGTTGGTGATCTTTCCGATTGAGCCAACA
ATACTGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050653-exon-scaffold_181-1575043694:3573..3649 | TCONS_00050653-exon-scaffold_181-1575043694:3573..3649 | Clytia hemisphaerica | exon |
| TCONS_00050653-exon-scaffold_181-1575043694:1041..1176 | TCONS_00050653-exon-scaffold_181-1575043694:1041..1176 | Clytia hemisphaerica | exon |
| TCONS_00050653-exon-scaffold_181-1510915933:3573..3649 | TCONS_00050653-exon-scaffold_181-1510915933:3573..3649 | Clytia hemisphaerica | exon |
| TCONS_00050653-exon-scaffold_181-1510915933:1041..1176 | TCONS_00050653-exon-scaffold_181-1510915933:1041..1176 | Clytia hemisphaerica | exon |
| TCONS_00050653-exon-scaffold_181-1491911889:3573..3649 | TCONS_00050653-exon-scaffold_181-1491911889:3573..3649 | Clytia hemisphaerica | exon |
| TCONS_00050653-exon-scaffold_181-1491911889:1041..1176 | TCONS_00050653-exon-scaffold_181-1491911889:1041..1176 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_181 | supercontig | scaffold_181:1041..3649 - |
Blast
The following BLAST results are available for this feature:
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