TCONS_00050656 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050656
Unique NameTCONS_00050656
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2728

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050656 ID=TCONS_00050656|Name=TCONS_00050656|organism=Clytia hemisphaerica|type=transcript|length=2728bp
ctcaaaccaaatgactttggaggttcggtgaaatggtggccaaattgccg
tcccatgttttgtcactGTCAgctagtcccaagttagagcagttgacagt
atcgATATCCCccttctaatttcaacacccttctttaaaaaaaggaataA
TCAGAATGTTGAAAcgctgatggaaactatttCTTTACTTAGCAATTaga
gaagaaaaaatcttttttctataaGTGATCCCAACCTTCCGTTCATTcat
atctctaaagaaggatgtcgaaattagaagaaggattagaccaacttacg
gtactaaTTACTCTAGCAGTTATTTATTTAAAATGGTAACGTCATATGCA
CAAGTGTCCAAACACAGATCAAAAATGTCCGTTCTTCCGCCATGGAAAAT
TTTGAGATCTGTTATCTATTAAATGATTTTAACTATTGTTGCCATTATtc
ctatttcttttttccatcaatcttcaggtgtcaggtaggtccaataggCA
TGTagcttcttttctttttttgctcagaataaTTTAATAGAAAAAACTGT
TGAAATGGAGAACGATGTTTTAAACAGTCAAATCACAGAAATGACTTTAA
AAACTGTTACAGAGATCGAAGAATTAGCTGAAGAAATACTAGTAGACCGT
GCACAGATTGTTGACTACGATAAAAAAAGGAACAGTAATCGAGAAGCTCA
AAGGGCTATCAAGAAAAATCCGGAAAATAAACACTGGTTTTGTATGGGAA
ATAATTTCATCAAATTGACACATGGTCATTGTCAGGATATTTTGAATAAA
GATCAAGAATTTATGGATGGTGAGATAAAGAAGCTTCATGATGGGTTAAA
ACCAAAAGTATCGAAATTACATGAGCTAGAAGGAAGGCCTGATGTGAAAG
GGTTTGATTTGAAAAGCTCAAATAAGTGAAGTTTGTTTTTTGGGCAACAA
GTGGTGATAACTTGGATGTGATTTGATGGTCTATCAACTTTTAAAACCAA
TTTCCATCATGGTTTTAGCCAGATGGATAGACTTTATGTGGCACAGTGAG
AAATACGATAACAATATTGATAACATTGGAGCATTTTTGTTGAAGCCAGT
AAGAGATTTAATTacctttttgaaatagattttggTGACTCTCAatattt
tcaaagagaaaagAGGACTACCTTAAGAGAATTAACTTTCGCGGTAACTA
ACTTTTGCAGAACTTATTTTTGTGGTGCAACTGTATGAAATTGGCATATT
TTacggaactaatttttgtggtTACCATCCACCTTTTGTTGaaattcttt
aacacttttctAGGAGTTTTTGAGAATTTATAGTAAAAGTTTTGCGGAAC
TATTTTTCCCTGTATGGCTTGATCTAAACATTTTggttttttaatttgaa
taataTTATCATTGGATATGAAGAACAAAACTGGGCAGTGGAAATTTCTC
TCTTAATATTGATATTAGGAGATTATTTTATATTCAAATATATGAGATAT
TATAATTAGGAGAAACAGAATTAACTAGAACTACAAAGTTGAGCATAGCA
TTATTATTGAGACGCTCTTTTTATAAGTCATAAGAATTCTGAATATATAA
TACAATATTTCCTAGAACACAGAAAACTTCATAATAGTATTTTTGTCGAC
ACTCTCAATTTTATATATGATCAGTTTAATGTTTGTTGGTTCAATTTTTC
TGTCTGGATCTAGATTATGAAGTTTCAATTGGTTATTTTATGTTTATATA
TCAAAGGGCTTTGATAAAGAAATTAATTAAGGCTCATTTATTTTTAAGAT
TAAGTAGCTCCAGAAATTTATCTTAAACTATTCTCTAAACCTTTCTTCAG
ATTTTCTCTACATCGCGTATTAATCcaagaaacttaaaaaataaaagaga
agGAACTTCAAAATGGCCCCAGGacaaatcataaattttattttcaatac
tttaTAATGCTTTCATCATTGTTTTTACTACATAACTTTATTACCCAAAT
TATCCAGTTTTGTaactttttacttcaaatttcaaattcttcAATCATTA
CACTGTACTTATGATTAGTGCGTAAACACGGAACTCAGAGCGATTTactt
tttatttagttttttaatggaagataacttttaaaatattaattattatt
aaacttattttttacaggtacaaaaaataacaaaagaagaagatcaacaa
aaaaaaacaataaaaacaacacaACATGCATTGAATGAATTCTGGTTGGC
ATCTCAACCTCGACGAGATGCCCTTTCACCTTGTGGTGAAGTTGAAGGAA
AGGGCAACAGCCTTCTTAATTTTCGCGTTTGCTTTGCATTCAGCTATTGA
GATGGTGGTACATGAAATGTATGTCAATTTTCATTGTATGTTGTATGGCC
GTGTTCAAGAGAAAGAAAGGATCTTCACTGAAGGTTTGGTACCCTTCTGT
TTGGTTTATTTCCTCACTACTCATATGATGACAGTGTTTGGATTTTATCT
TTGGATACAGACTGAAAGACATCCAAGGCATATTTGGACAAATCCATCCA
ATAATTTTCGATGGAAGATACTGTTCATTTACCTGATTTGTGTACACCTC
GGATTCTTCAAAGGATTCCATCATCTCTGCGATTCTCTTGATGCACCAAA
GTAAGTAAACATTACCAGgtgttttaaaagattttgtacAAGTTTGAGTC
GAGATTCTGTgagaaaattagaaatttt
Run BLAST on NCBI

protein sequence of TCONS_00050656-protein

>TCONS_00050656-protein ID=TCONS_00050656-protein|Name=TCONS_00050656-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MNSGWHLNLDEMPFHLVVKLKERATAFLIFAFALHSAIEMVVHEMYVNFH
CMLYGRVQEKERIFTEGLVPFCLVYFLTTHMMTVFGFYLWIQTERHPRHI
WTNPSNNFRWKILFIYLICVHLGFFKGFHHLCDSLDAPK
Run BLAST on NCBI

transcript from alignment at scaffold_182:100824..104502+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050656 ID=TCONS_00050656|Name=TCONS_00050656|organism=Clytia hemisphaerica|type=transcript|length=3679bp|location=Sequence derived from alignment at scaffold_182:100824..104502+ (Clytia hemisphaerica)
ctcaaaccaaatgactttggaggttcggtgaaatggtggccaaattgccg
tcccatgttttgtcactGTCAgctagtcccaagttagagcagttgacagt
atcgATATCCCccttctaatttcaacacccttctttaaaaaaaggaataA
TCAGAATGTTGAAAcgctgatggaaactatttCTTTACTTAGCAATTaga
gaagaaaaaatcttttttctataaGTGATCCCAACCTTCCGTTCATTcat
atctctaaagaaggatgtcgaaattagaagaaggattagaccaacttacg
gtactaaTTACTCTAGCAGTTATTTATTTAAAATGGTAACGTCATATGCA
CAAGTGTCCAAACACAGATCAAAAATGTCCGTTCTTCCGCCATGGAAAAT
TTTGAGATCTGTTATCTATTAAATGATTTTAACTATTGTTGCCATTATtc
ctatttcttttttccatcaatcttcaggtgtcaggtaggtccaataggCA
TGTagcttcttttctttttttgctcagaataaTTTAATAGAAAAAACTGT
TGAAATGGAGAACGATGTTTTAAACAGTCAAATCACAGAAATGACTTTAA
AAACTGTTACAGAGATCGAAGAATTAGCTGAAGAAATACTAGTAGACCGT
GCACAGATTGTTGACTACGATAAAAAAAGGAACAGTAATCGAGAAGCTCA
AAGGGCTATCAAGAAAAATCCGGAAAATAAACACTGGTTTTGTATGGGAA
ATAATTTCATCAAATTGACACATGGTCATTGTCAGGATATTTTGAATAAA
GATCAAGAATTTATGGATGGTGAGATAAAGAAGCTTCATGATGGGTTAAA
ACCAAAAGTATCGAAATTACATGAGCTAGAAGGAAGGCCTGATGTGAAAG
GGTTTGATTTGAAAAGCTCAAATAAGTGAAGTTTGTTTTTTGGGCAACAA
GTGGTGATAACTTGGATGTGATTTGATGGTCTATCAACTTTTAAAACCAA
TTTCCATCATGGTTTTAGCCAGATGGATAGACTTTATGTGGCACAGTGAG
AAATACGATAACAATATTGATAACATTGGAGCATTTTTGTTGAAGCCAGT
AAGAGATTTAATTacctttttgaaatagattttggTGACTCTCAatattt
tcaaagagaaaagAGGACTACCTTAAGAGAATTAACTTTCGCGGTAACTA
ACTTTTGCAGAACTTATTTTTGTGGTGCAACTGTATGAAATTGGCATATT
TTacggaactaatttttgtggtTACCATCCACCTTTTGTTGaaattcttt
aacacttttctAGGAGTTTTTGAGAATTTATAGTAAAAGTTTTGCGGAAC
TATTTTTCCCTGTATGGCTTGATCTAAACATTTTggttttttaatttgaa
taataTTATCATTGGATATGAAGAACAAAACTGGGCAGTGGAAATTTCTC
TCTTAATATTGATATTAGGAGATTATTTTATATTCAAATATATGAGATAT
TATAATTAGGAGAAACAGAATTAACTAGAACTACAAAGTTGAGCATAGCA
TTATTATTGAGACGCTCTTTTTATAAGTCATAAGAATTCTGAATATATAA
TACAATATTTCCTAGAACACAGAAAACTTCATAATAGTATTTTTGTCGAC
ACTCTCAATTTTATATATGATCAGTTTAATGTTTGTTGGTTCAATTTTTC
TGTCTGGATCTAGATTATGAAGTTTCAATTGGTTATTTTATGTTTATATA
TCAAAGGGCTTTGATAAAGAAATTAATTAAGGCTCATTTATTTTTAAGAT
TAAGTAGCTCCAGAAATTTATCTTAAACTATTCTCTAAACCTTTCTTCAG
ATTTTCTCTACATCGCGTATTAATCcaagaaacttaaaaaataaaagaga
agGAACTTCAAAATGGCCCCAGGacaaatcataaattttattttcaatac
tttaTAATGCTTTCATCATTGTTTTTACTACATAACTTTATTACCCAAAT
TATCCAGTTTTGTaactttttacttcaaatttcaaattcttcAATCATTA
CACTGTACTTATGATTAGTGCGTAAACACGGAACTCAGAGCGATTTactt
tttatttagttttttaatggaagataacttttaaaatattaattattatt
aaacttattttttacaggtacaaaaaataacaaaagaagaagatcaacaa
aaaaaaacaataaaaacaacacaACATGCATTGAATGAATTCTGGTTGGC
ATCTCAACCTCGACGAGATGCCCTTTCACCTTGTGGTGAAGTTGAAGGAA
AGGGCAACAGCCTTCTTAATTTTCGCGTTTGCTTTGCATTCAGCTATTGA
GATGGTGGTACATGAAATGTATGTCAATTTTCATTGTATGTTGTATGGCC
GTGTTCAAGAGAAAGAAAGGATCTTCACTGAAGGTTTGGTACCCTTCTGT
TTGGTTTATTTCCTCACTACTCATATGATGACAGTGTTTGGATTTTATCT
TTGGATACAGACTGAAAGACATCCAAGGCATATTTGGTAAgtagaaagat
ttttgaaattgactATTGCGAGGTTTGAGAACCATTGTAACTCAAAATTT
TGGTTATAAAAAAACGTCAACCTGTTCCTATCGCATTGACTACGTTAAGA
GAAGAAATCTTTGCGGGAAGTAATTTGTTGTAGAAAATAATTTCGTGGAT
CACAGCTCAGAATCaaaatccagaagttttctGGAATTTATTTCGCCGAT
GAGAGAATTTTTAGTTTACAATATGGCCTATCTTGCCCAAAAGGCCAATT
TAGAGGTGAtttttttagatcctgagaatatttgtgttttgTAGAATTTG
ATTTTGGGGATTTGTCGAAAAATTACTTCCTTTAAGATAGAATCTCCTTC
AACATTTTAGTCTTTAGAAAATATCGATTCATGTACCACCCGGTACACTT
TTATTTGACTGTAGTCTACAGGTAGAGAATTAAGCTGTGTCGTGCCAAGT
CTTAGGTCCAGTCATTTTTTGGGTGTCTTTCTGTTAAAGTATTTAGCCGT
AAGTACTTAGTATTAAGCGTTAGGACTCCTTTCAATttactaggctacgt
catatcttcctccgtttcgagcgtaaaactcctactcttagGGATATGAG
CACCGCTcctgttttgaatattgaaattctccggatacatcgcatgcgca
ctgaggttttcaTGAAACAAATAGAGAgcttcgaaacctaagccaatcag
ctgtgttttaaacattcttttaaatttaaaatgataaacatcttttgtga
aggttgtctattatgtttgaacctattaataagcaattacCGATGGGGGT
TACTAGTGGCTGCCTATTAGCAGTACCTATAGACCAAGAGCAAGGCCTAA
AAGCCttgagctgtctattgtgtagactatcaATTTACATactttatgtt
ttcattttcattaacTTTTCTCTTGTTTCGTTTCCAGGACAAATCCATCC
AATAATTTTCGATGGAAGATACTGTTCATTTACCTGATTTGTGTACACCT
CGGATTCTTCAAAGGATTCCATCATCTCTGCGATTCTCTTGATGCACCAA
AGTAAGTAAACATTACCAGgtgttttaaaagattttgtacAAGTTTGAGT
CGAGATTCTGTgagaaaattagaaatttt

Coding sequence (CDS) from alignment at scaffold_182:100824..104502+

>TCONS_00050656 ID=TCONS_00050656|Name=TCONS_00050656|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_182:100824..104502+ (Clytia hemisphaerica)
ATGAATTCTGGTTGGCATCTCAACCTCGACGAGATGCCCTTTCACCTTGT
GGTGAAGTTGAAGGAAAGGGCAACAGCCTTCTTAATTTTCGCGTTTGCTT
TGCATTCAGCTATTGAGATGGTGGTACATGAAATGTATGTCAATTTTCAT
TGTATGTTGTATGGCCGTGTTCAAGAGAAAGAAAGGATCTTCACTGAAGG
TTTGGTACCCTTCTGTTTGGTTTATTTCCTCACTACTCATATGATGACAG
TGTTTGGATTTTATCTTTGGATACAGACTGAAAGACATCCAAGGCATATT
TGGACAAATCCATCCAATAATTTTCGATGGAAGATACTGTTCATTTACCT
GATTTGTGTACACCTCGGATTCTTCAAAGGATTCCATCATCTCTGCGATT
CTCTTGATGCACCAAAGTAAATGAATTCTGGTTGGCATCTCAACCTCGAC
GAGATGCCCTTTCACCTTGTGGTGAAGTTGAAGGAAAGGGCAACAGCCTT
CTTAATTTTCGCGTTTGCTTTGCATTCAGCTATTGAGATGGTGGTACATG
AAATGTATGTCAATTTTCATTGTATGTTGTATGGCCGTGTTCAAGAGAAA
GAAAGGATCTTCACTGAAGGTTTGGTACCCTTCTGTTTGGTTTATTTCCT
CACTACTCATATGATGACAGTGTTTGGATTTTATCTTTGGATACAGACTG
AAAGACATCCAAGGCATATTTGGACAAATCCATCCAATAATTTTCGATGG
AAGATACTGTTCATTTACCTGATTTGTGTACACCTCGGATTCTTCAAAGG
ATTCCATCATCTCTGCGATTCTCTTGATGCACCAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032095XLOC_032095Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050656-proteinTCONS_00050656-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050656-exon-scaffold_182-1491911889:100824..103359TCONS_00050656-exon-scaffold_182-1491911889:100824..103359Clytia hemisphaericaexon
TCONS_00050656-exon-scaffold_182-1510915933:100824..103359TCONS_00050656-exon-scaffold_182-1510915933:100824..103359Clytia hemisphaericaexon
TCONS_00050656-exon-scaffold_182-1575043694:100824..103359TCONS_00050656-exon-scaffold_182-1575043694:100824..103359Clytia hemisphaericaexon
TCONS_00050656-exon-scaffold_182-1491911889:104311..104502TCONS_00050656-exon-scaffold_182-1491911889:104311..104502Clytia hemisphaericaexon
TCONS_00050656-exon-scaffold_182-1510915933:104311..104502TCONS_00050656-exon-scaffold_182-1510915933:104311..104502Clytia hemisphaericaexon
TCONS_00050656-exon-scaffold_182-1575043694:104311..104502TCONS_00050656-exon-scaffold_182-1575043694:104311..104502Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_182supercontigscaffold_182:100824..104502 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.0859	20.3403	6.4442	4.50941	10.562	8.09255	8.54824	9.12008	6.37331	5.69165	5.02582	4.48359	3.79358	3.71594	4.86242	4.72972	8.01422	6.49217	2.8161	4.05049	8.60796	8.0727	19.2329	19.4381	8.34846	8.55759	6.96229	4.66381	12.3574	11.6608
Blast
[Close]
BLAST of TCONS_00050656 vs. Swiss-Prot (Human)
Match: PDRG1 (p53 and DNA damage-regulated protein 1 OS=Homo sapiens GN=PDRG1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 4.159e-18
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 3 
Query:  645 DRAQIVDYDKKRNSNREAQRAIKKNPENKH--WFCMGNNFIKLTHGHCQDILNKDQEFMDGEIKKLHDGLKPKVSKLHELEGRPDVKGFDLKSSNK 926
            D+ QIVD D KRN NRE  RA++K+         C GN FIK+ H   ++++ KDQ+ +D EI+KL   LK KV++L E +G+P++KGF+L   N+
Sbjct:   26 DKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQGKPELKGFNLNPLNQ 121
The following BLAST results are available for this feature:
BLAST of TCONS_00050656 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDRG14.159e-1844.79p53 and DNA damage-regulated protein 1 OS=Homo sap... [more]
back to top