TCONS_00050658 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00050658
Unique Name	TCONS_00050658
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	882

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_182:152310..154884+
coding sequence from alignment at scaffold_182:152310..154884+

transcript sequence

>TCONS_00050658 ID=TCONS_00050658|Name=TCONS_00050658|organism=Clytia hemisphaerica|type=transcript|length=882bp
AGTTACCACACCAAAAGaagttttattcctattttcaagCTTGACTTCTA
GCCTGCTAAACAGTGgaaatgtccgttagtcacatatGGAATTCATGATA
TAGTCTGGTccgcagtttgtacaatataaatagccgtcagaaacgttttc
ctggcatgaatccgtggcgcagtggataaggcattggatTTCCAAACGAT
GGAACTTTGCATtcggtgggttcgaatcccaccggtggcgatctatcgCG
AGATAACTGAGAGATAACCTAAATGAATTAATGGCTTCCATTAGAAGGGA
AGGTTTTCTTCTGAAGCGTGACGATTCCTGGATGTTTCCTGGTTGGAAAA
AGAAGCATTGTCAGCTGAAATCAGATGGTGTTTTTGCATTTGGAGATGGG
AAACACGTTGAACATCATTTTAAtacaaaaattgatttgaagaAAGTAGA
ACAAGGATTTGAAGCTGAATCATTGAATCTTCCAAAAGGTCGAAGCGATA
TGGAATCTATGTTTATGGTCCACTTGAAgcacaaaaaatattatttcctT
GCAAGCAATATTGGAGAGTGCTTagCTTGGATTGGAAGTATCAAAAACTC
TCAAACTGCTacaagtTCAGCCGTAGCTCCAATAAGTCATGGTGCAACAG
CTCCTGGATATCATGCACCATCACCACATCACCATGGTCAGCCTCACCCA
CAAAATCATGGCCAACCTTATCCACAAAATTATCCAGtcCAACATCAGCC
TATTCATCAACAGCATCAACAACCAATGCACCACCAGGCTCCTCCCTTCA
ATCCGAACTATCAtcattgacaaaattgaacaaaatcTCATTTATTGTAT
ATTTATGCTTTGATTAACACAGTATTTCAAAA

Run BLAST on NCBI

protein sequence of TCONS_00050658-protein

>TCONS_00050658-protein ID=TCONS_00050658-protein|Name=TCONS_00050658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MASIRREGFLLKRDDSWMFPGWKKKHCQLKSDGVFAFGDGKHVEHHFNTK
IDLKKVEQGFEAESLNLPKGRSDMESMFMVHLKHKKYYFLASNIGECLAW
IGSIKNSQTATSSAVAPISHGATAPGYHAPSPHHHGQPHPQNHGQPYPQN
YPVQHQPIHQQHQQPMHHQAPPFNPNYHH

Run BLAST on NCBI

transcript from alignment at scaffold_182:152310..154884+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00050658 ID=TCONS_00050658|Name=TCONS_00050658|organism=Clytia hemisphaerica|type=transcript|length=2575bp|location=Sequence derived from alignment at scaffold_182:152310..154884+ (Clytia hemisphaerica)
AGTTACCACACCAAAAGaagttttattcctattttcaagCTTGACTTCTA
GCCTGCTAAACAGTGgaaatgtccgttagtcacatatGGAATTCATGATA
TAGTCTGGTccgcagtttgtacaatataaatagccgtcagaaacgttttc
ctggcatgaatccgtggcgcagtggataaggcattggatTTCCAAACGAT
GGAACTTTGCATtcggtgggttcgaatcccaccggtggcgatctatcggt
aagtcattcagtcagttagaaaacatagaaaccAACTCACATAGAACCag
gaagtcagaaaaactaagaACAAACTGGAAATACAAAATAAGTCCAGACA
TGTCTTTCGTGAAGCCACAACCGTTTATTAGGACCatctctaagccaaat
atcGAAAATTATCTGATAACCCCTTTAAAGAAAGTgattgaaaaccttga
aaatccaCCTATCAAATTATAGGCAAGCATacttacatgatacatcagca
TAATCTCGTCATAAGAACTCgaaaaaattcactttaaagagaaaaacttt
tttgtggctcacctggtattttaattttttatgttttcttaaGAATTTTG
ATTTCAGTTGTGTGGACTGTGCTGTGCACCCCTGAAACATACAGAGATGT
GAAGTATATAAATCCTAATATGTGACCTTCCACAGGATTTACAGTACATG
CTCTTAGGGTTCATCATCAGATTCTCTTCACCATGTAAAAAAAGCCTAGT
TGCTAAGTAAAATTTATTTCTCATTGGATTTcaatttataaatttatttt
tctttatatgtAACTATTATAATACATTTTAATGATTATGTTATAGCGAG
ATAACTGAGAGATAACCTAAATGAATTAATGGCTTCCATTAGAAGGGAAG
GTTTTCTTCTGAAGCGTGACGGTAAGCTATTTACTGTATCATTTTGTAGC
CTTGAATTTAgatacactaagattttattatgatcttcattgaagataaa
aaaagtgaatttttgatccagacaatttttggaaaacattttcagtactt
taccaaccctgatattcttattttaccgaccgaccgacccatatttttct
aatgatCTGCccatagaacaacaaattaaattggtctcgtctTACAAGAT
AATGAAAAATGGCTAATTTGAGTCTTGTGTAGTTTACCAAgcaccaaaat
taaaataagtttaatcaaaaatattattttgttatGTTATTACACTATTA
CAATATTCTCAAGGTATGAAAtttgtatgaatttttttttgaatctcAGA
TTCCTGGATGTTTCCTGGTTGGAAAAAGAAGCATTGTCAGCTGAAATCAG
ATGGTGTTTTTGCATTTGGAGATGGGAAACACGTTGAACATCATTTTAAt
acaaaaattgatttgaagaAAGTAGAACAAGGATTTGAAGCTGAATCATT
GAATCTTCCAAAAGGTCGAAGCGATATGGAATCTATGTTTATGGTCCACT
TGAAgcacaaaaaatattatttcctTGCAAGCAATATTGGAGAGTGCTTG
TATGTAACTTTAcccaaatctttcaaaattatttatatttgaaaaaaaca
taatTATCACGCTTTATCTAGGAAATAGGTTAATTTAAAACATACTTAGT
TTACCTATAtgttattgatatttttaaataccttttgtttttgttttaga
gCTTGGATTGGAAGTATCAAAAACTCTCAAACTGCTGTAAGGGATTGTTT
TTCAAACTCTTATTCTCAAATTGGGCCtgatttttcaattatttaacAGT
TATATAATTATTTAATGTAAACTTGAATTAAGGACTGTAGAGGTTAATTT
TCATGTTGAAATGGACTTTTTTGTTGCTTGAACGAGCGAAAAGGCAATTT
TGTGAGTGAGTGCAAGAATTCTTGTGCAGATTTGCCCAATTTTTCTAAGA
TCCTCTGATATTCCCAAAAGGAAATCATGATCCTTTAGAAATTTTGAACA
TGTGAGGATTCTATCTATGTCATTGATGTATATTGATCTTTGATGCCTTT
TTCCTgaccttttttcttttctttcattttatcttttatcaaacagacaa
gtTCAGCCGTAGCTCCAATAAGTCATGGTGCAACAGCTCCTGGATATCAT
GCACCATCACCACATCACCATGGTCAGCCTCACCCACAAAATCATGGCCA
ACCTTATCCACAAAATTATCCAGGTTCTTTTCTCTGAAATTTATGAAAGA
TTATAAATTGGGTGGGTTTATTGGTGGTGAAGGCTTGAATCTAAAAGTAC
TAATTTTGAGCTGTTTTTTGAATGTAAATCTGGGAatctttttaataata
attaatTCAAAAAGGTGTTTCTCAAAATAGGTTTATTTCTCAAAATTACT
CGACTTGACAccttcttatttttctttcagtcCAACATCAGCCTATTCAT
CAACAGCATCAACAACCAATGCACCACCAGGCTCCTCCCTTCAATCCGAA
CTATCAtcattgacaaaattgaacaaaatcTCATTTATTGTATATTTATG
CTTTGATTAACACAGTATTTCAAAA

Coding sequence (CDS) from alignment at scaffold_182:152310..154884+

>TCONS_00050658 ID=TCONS_00050658|Name=TCONS_00050658|organism=Clytia hemisphaerica|type=CDS|length=2700bp|location=Sequence derived from alignment at scaffold_182:152310..154884+ (Clytia hemisphaerica)
ATGGCTTCCATTAGAAGGGAAGGTTTTCTTCTGAAGCGTGACGATTCCTG
GATGTTTCCTGGTTGGAAAAAGAAGCATTGTCAGCTGAAATCAGATGGTG
TTTTTGCATTTGGAGATGGGAAACACGTTGAACATCATTTTAAtacaaaa
attgatttgaagaAAGTAGAACAAGGATTTGAAGCTGAATCATTGAATCT
TCCAAAAGGTCGAAGCGATATGGAATCTATGTTTATGGTCCACTTGAAgc
acaaaaaatattatttcctTGCAAGCAATATTGGAGAGTGCTTagCTTGG
ATTGGAAGTATCAAAAACTCTCAAACTGCTacaagtTCAGCCGTAGCTCC
AATAAGTCATGGTGCAACAGCTCCTGGATATCATGCACCATCACCACATC
ACCATGGTCAGCCTCACCCACAAAATCATGGCCAACCTTATCCACAAAAT
TATCCAGtcCAACATCAGCCTATTCATCAACAGCATCAACAACCAATGCA
CCACCAGGCTCCTCCCTTCAATCCGAACTATCAtcattgaATGGCTTCCA
TTAGAAGGGAAGGTTTTCTTCTGAAGCGTGACGATTCCTGGATGTTTCCT
GGTTGGAAAAAGAAGCATTGTCAGCTGAAATCAGATGGTGTTTTTGCATT
TGGAGATGGGAAACACGTTGAACATCATTTTAAtacaaaaattgatttga
agaAAGTAGAACAAGGATTTGAAGCTGAATCATTGAATCTTCCAAAAGGT
CGAAGCGATATGGAATCTATGTTTATGGTCCACTTGAAgcacaaaaaata
ttatttcctTGCAAGCAATATTGGAGAGTGCTTagCTTGGATTGGAAGTA
TCAAAAACTCTCAAACTGCTacaagtTCAGCCGTAGCTCCAATAAGTCAT
GGTGCAACAGCTCCTGGATATCATGCACCATCACCACATCACCATGGTCA
GCCTCACCCACAAAATCATGGCCAACCTTATCCACAAAATTATCCAGtcC
AACATCAGCCTATTCATCAACAGCATCAACAACCAATGCACCACCAGGCT
CCTCCCTTCAATCCGAACTATCAtcattgaATGGCTTCCATTAGAAGGGA
AGGTTTTCTTCTGAAGCGTGACGATTCCTGGATGTTTCCTGGTTGGAAAA
AGAAGCATTGTCAGCTGAAATCAGATGGTGTTTTTGCATTTGGAGATGGG
AAACACGTTGAACATCATTTTAAtacaaaaattgatttgaagaAAGTAGA
ACAAGGATTTGAAGCTGAATCATTGAATCTTCCAAAAGGTCGAAGCGATA
TGGAATCTATGTTTATGGTCCACTTGAAgcacaaaaaatattatttcctT
GCAAGCAATATTGGAGAGTGCTTagCTTGGATTGGAAGTATCAAAAACTC
TCAAACTGCTacaagtTCAGCCGTAGCTCCAATAAGTCATGGTGCAACAG
CTCCTGGATATCATGCACCATCACCACATCACCATGGTCAGCCTCACCCA
CAAAATCATGGCCAACCTTATCCACAAAATTATCCAGtcCAACATCAGCC
TATTCATCAACAGCATCAACAACCAATGCACCACCAGGCTCCTCCCTTCA
ATCCGAACTATCAtcattgaATGGCTTCCATTAGAAGGGAAGGTTTTCTT
CTGAAGCGTGACGATTCCTGGATGTTTCCTGGTTGGAAAAAGAAGCATTG
TCAGCTGAAATCAGATGGTGTTTTTGCATTTGGAGATGGGAAACACGTTG
AACATCATTTTAAtacaaaaattgatttgaagaAAGTAGAACAAGGATTT
GAAGCTGAATCATTGAATCTTCCAAAAGGTCGAAGCGATATGGAATCTAT
GTTTATGGTCCACTTGAAgcacaaaaaatattatttcctTGCAAGCAATA
TTGGAGAGTGCTTagCTTGGATTGGAAGTATCAAAAACTCTCAAACTGCT
acaagtTCAGCCGTAGCTCCAATAAGTCATGGTGCAACAGCTCCTGGATA
TCATGCACCATCACCACATCACCATGGTCAGCCTCACCCACAAAATCATG
GCCAACCTTATCCACAAAATTATCCAGtcCAACATCAGCCTATTCATCAA
CAGCATCAACAACCAATGCACCACCAGGCTCCTCCCTTCAATCCGAACTA
TCAtcattgaATGGCTTCCATTAGAAGGGAAGGTTTTCTTCTGAAGCGTG
ACGATTCCTGGATGTTTCCTGGTTGGAAAAAGAAGCATTGTCAGCTGAAA
TCAGATGGTGTTTTTGCATTTGGAGATGGGAAACACGTTGAACATCATTT
TAAtacaaaaattgatttgaagaAAGTAGAACAAGGATTTGAAGCTGAAT
CATTGAATCTTCCAAAAGGTCGAAGCGATATGGAATCTATGTTTATGGTC
CACTTGAAgcacaaaaaatattatttcctTGCAAGCAATATTGGAGAGTG
CTTagCTTGGATTGGAAGTATCAAAAACTCTCAAACTGCTacaagtTCAG
CCGTAGCTCCAATAAGTCATGGTGCAACAGCTCCTGGATATCATGCACCA
TCACCACATCACCATGGTCAGCCTCACCCACAAAATCATGGCCAACCTTA
TCCACAAAATTATCCAGtcCAACATCAGCCTATTCATCAACAGCATCAAC
AACCAATGCACCACCAGGCTCCTCCCTTCAATCCGAACTATCAtcattga

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_032097	XLOC_032097	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00050658-protein	TCONS_00050658-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_182	supercontig	scaffold_182:152310..154884 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.477504	0	0	0	0	0	0	3.70093	7.14778	5.46846	7.11452	5.93556	7.60327	3.42943	7.78605	3.09218	4.67841	1.36025	10.2654	0	0	0	0	0	0	0	0	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001849	PH_domain
IPR011993	PH_dom-like

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00050658 vs. Swiss-Prot (Human)

BLAST of TCONS_00050658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00050658 (transcript) - C. hemisphaerica