TCONS_00050659 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050659
Unique NameTCONS_00050659
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1282

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050659 ID=TCONS_00050659|Name=TCONS_00050659|organism=Clytia hemisphaerica|type=transcript|length=1282bp
AGTTACCACACCAAAAGaagttttattcctattttcaagCTTGACTTCTA
GCCTGCTAAACAGTGgaaatgtccgttagtcacatatGGAATTCATGATA
TAGTCTGGTccgcagtttgtacaatataaatagccgtcagaaacgttttc
ctggcatgaatccgtggcgcagtggataaggcattggatTTCCAAACGAT
GGAACTTTGCATtcggtgggttcgaatcccaccggtggcgatctatcgCG
AGATAACTGAGAGATAACCTAAATGAATTAATGGCTTCCATTAGAAGGGA
AGGTTTTCTTCTGAAGCGTGACGATTCCTGGATGTTTCCTGGTTGGAAAA
AGAAGCATTGTCAGCTGAAATCAGATGGTGTTTTTGCATTTGGAGATGGG
AAACACGTTGAACATCATTTTAAtacaaaaattgatttgaagaAAGTAGA
ACAAGGATTTGAAGCTGAATCATTGAATCTTCCAAAAGGTCGAAGCGATA
TGGAATCTATGTTTATGGTCCACTTGAAgcacaaaaaatattatttcctT
GCAAGCAATATTGGAGAGTGCTTagCTTGGATTGGAAGTATCAAAAACTC
TCAAACTGCTacaagtTCAGCCGTAGCTCCAATAAGTCATGGTGCAACAG
CTCCTGGATATCATGCACCATCACCACATCACCATGGTCAGCCTCACCCA
CAAAATCATGGCCAACCTTATCCACAAAATTATCCAGtcCAACATCAGCC
TATTCATCCACAGCATCAACAACCAATGCACCACCAGGCTCCTCCCTTCA
ATCCGAACTATCAtcattgacaaaattgaacaaaatcTCATTTATTGTAT
ATTTATGCTTTGATTAACACAGTATTTCAAAAGCCAAGAAAGTAATGACG
GTAATTAAGTCCAGCTAGCTTACATTTCAAAGAATTTCATTTAATATACA
CACGAAGACGATCgacttaaaaaaatatttttaaatcaaatatcgtgaaa
aaatatgattttagaGAGCCTTTTGTGCTGTATGAGAATAATTTGACTGA
AACTATCCACTGCAGTTTTTTATTGGAATCATATTTACTGCGCAAGCAAA
ACCTACATGAATTATACTAATATATGACATTGCTGCATTTTGTAAAGAAT
CTTTTTTGACTGACACTTTTTGTCTTTGATATAAACGCTCATGCATATTC
TTTGGGGAGGGGCTCTACTATGAATTTTGGAGCTTGAGTTTTCAAGTACA
AAGTTCATAGTTCGGAGGTATAAAgggggggg
Run BLAST on NCBI

transcript from alignment at scaffold_182:152310..155604+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050659 ID=TCONS_00050659|Name=TCONS_00050659|organism=Clytia hemisphaerica|type=transcript|length=3295bp|location=Sequence derived from alignment at scaffold_182:152310..155604+ (Clytia hemisphaerica)
AGTTACCACACCAAAAGaagttttattcctattttcaagCTTGACTTCTA
GCCTGCTAAACAGTGgaaatgtccgttagtcacatatGGAATTCATGATA
TAGTCTGGTccgcagtttgtacaatataaatagccgtcagaaacgttttc
ctggcatgaatccgtggcgcagtggataaggcattggatTTCCAAACGAT
GGAACTTTGCATtcggtgggttcgaatcccaccggtggcgatctatcggt
aagtcattcagtcagttagaaaacatagaaaccAACTCACATAGAACCag
gaagtcagaaaaactaagaACAAACTGGAAATACAAAATAAGTCCAGACA
TGTCTTTCGTGAAGCCACAACCGTTTATTAGGACCatctctaagccaaat
atcGAAAATTATCTGATAACCCCTTTAAAGAAAGTgattgaaaaccttga
aaatccaCCTATCAAATTATAGGCAAGCATacttacatgatacatcagca
TAATCTCGTCATAAGAACTCgaaaaaattcactttaaagagaaaaacttt
tttgtggctcacctggtattttaattttttatgttttcttaaGAATTTTG
ATTTCAGTTGTGTGGACTGTGCTGTGCACCCCTGAAACATACAGAGATGT
GAAGTATATAAATCCTAATATGTGACCTTCCACAGGATTTACAGTACATG
CTCTTAGGGTTCATCATCAGATTCTCTTCACCATGTAAAAAAAGCCTAGT
TGCTAAGTAAAATTTATTTCTCATTGGATTTcaatttataaatttatttt
tctttatatgtAACTATTATAATACATTTTAATGATTATGTTATAGCGAG
ATAACTGAGAGATAACCTAAATGAATTAATGGCTTCCATTAGAAGGGAAG
GTTTTCTTCTGAAGCGTGACGGTAAGCTATTTACTGTATCATTTTGTAGC
CTTGAATTTAgatacactaagattttattatgatcttcattgaagataaa
aaaagtgaatttttgatccagacaatttttggaaaacattttcagtactt
taccaaccctgatattcttattttaccgaccgaccgacccatatttttct
aatgatCTGCccatagaacaacaaattaaattggtctcgtctTACAAGAT
AATGAAAAATGGCTAATTTGAGTCTTGTGTAGTTTACCAAgcaccaaaat
taaaataagtttaatcaaaaatattattttgttatGTTATTACACTATTA
CAATATTCTCAAGGTATGAAAtttgtatgaatttttttttgaatctcAGA
TTCCTGGATGTTTCCTGGTTGGAAAAAGAAGCATTGTCAGCTGAAATCAG
ATGGTGTTTTTGCATTTGGAGATGGGAAACACGTTGAACATCATTTTAAt
acaaaaattgatttgaagaAAGTAGAACAAGGATTTGAAGCTGAATCATT
GAATCTTCCAAAAGGTCGAAGCGATATGGAATCTATGTTTATGGTCCACT
TGAAgcacaaaaaatattatttcctTGCAAGCAATATTGGAGAGTGCTTG
TATGTAACTTTAcccaaatctttcaaaattatttatatttgaaaaaaaca
taatTATCACGCTTTATCTAGGAAATAGGTTAATTTAAAACATACTTAGT
TTACCTATAtgttattgatatttttaaataccttttgtttttgttttaga
gCTTGGATTGGAAGTATCAAAAACTCTCAAACTGCTGTAAGGGATTGTTT
TTCAAACTCTTATTCTCAAATTGGGCCtgatttttcaattatttaacAGT
TATATAATTATTTAATGTAAACTTGAATTAAGGACTGTAGAGGTTAATTT
TCATGTTGAAATGGACTTTTTTGTTGCTTGAACGAGCGAAAAGGCAATTT
TGTGAGTGAGTGCAAGAATTCTTGTGCAGATTTGCCCAATTTTTCTAAGA
TCCTCTGATATTCCCAAAAGGAAATCATGATCCTTTAGAAATTTTGAACA
TGTGAGGATTCTATCTATGTCATTGATGTATATTGATCTTTGATGCCTTT
TTCCTgaccttttttcttttctttcattttatcttttatcaaacagacaa
gtTCAGCCGTAGCTCCAATAAGTCATGGTGCAACAGCTCCTGGATATCAT
GCACCATCACCACATCACCATGGTCAGCCTCACCCACAAAATCATGGCCA
ACCTTATCCACAAAATTATCCAGGTTCTTTTCTCTGAAATTTATGAAAGA
TTATAAATTGGGTGGGTTTATTGGTGGTGAAGGCTTGAATCTAAAAGTAC
TAATTTTGAGCTGTTTTTTGAATGTAAATCTGGGAatctttttaataata
attaatTCAAAAAGGTGTTTCTCAAAATAGGTTTATTTCTCAAAATTACT
CGACTTGACAccttcttatttttctttcagtcCAACATCAGCCTATTCAT
CAACAGCATCAACAACCAATGCACCACCAGGCTCCTCCCTTCAATCCGAA
CTATCAtcattgacaaaattgaacaaaatcTCATTTATTGTATATTTATG
CTTTGATTAACACAGTATTTCAAAAGCCANGGGTGGGTTTATTGGTGGTG
AAGGCTTGAATCTAAAAGTACTGATTTGAGCTGTTTTTTTAATGTAAATC
TGGGAatctttttaataataattaatTCAAAAAGGTGTTTCTCAAAATAG
ATTTATTTCTCAAAATTACTCGACTTGACAccttcttatttttctttcag
tcCAACATCAGCCTATTCATCCACAGCATCAACAACCAATGCACCACCAG
GCTCCTCCCTTCAATCCGAACTATCAtcattgacaaaattgaacaaaatc
TCATTTATTGTATATTTATGCTTTGATTAACACAGTATTTCAAAAGCCAA
GAAAGTAATGACGGTAATTAAGTCCAGCTAGCTTACATTTCAAAGAATTT
CATTTAATATACACACGAAGACGATCgacttaaaaaaatatttttaaatc
aaatatcgtgaaaaaatatgattttagaGAGCCTTTTGTGCTGTATGAGA
ATAATTTGACTGAAACTATCCACTGCAGTTTTTTATTGGAATCATATTTA
CTGCGCAAGCAAAACCTACATGAATTATACTAATATATGACATTGCTGCA
TTTTGTAAAGAATCTTTTTTGACTGACACTTTTTGTCTTTGATATAAACG
CTCATGCATATTCTTTGGGGAGGGGCTCTACTATGAATTTTGGAGCTTGA
GTTTTCAAGTACAAAGTTCATAGTTCGGAGGTATAAAgggggggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032097XLOC_032097Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050659-exon-scaffold_182-1491911889:152310..152557TCONS_00050659-exon-scaffold_182-1491911889:152310..152557Clytia hemisphaericaexon
TCONS_00050659-exon-scaffold_182-1510915933:152310..152557TCONS_00050659-exon-scaffold_182-1510915933:152310..152557Clytia hemisphaericaexon
TCONS_00050659-exon-scaffold_182-1575043694:152310..152557TCONS_00050659-exon-scaffold_182-1575043694:152310..152557Clytia hemisphaericaexon
TCONS_00050659-exon-scaffold_182-1491911889:153156..153230TCONS_00050659-exon-scaffold_182-1491911889:153156..153230Clytia hemisphaericaexon
TCONS_00050659-exon-scaffold_182-1510915933:153156..153230TCONS_00050659-exon-scaffold_182-1510915933:153156..153230Clytia hemisphaericaexon
TCONS_00050659-exon-scaffold_182-1575043694:153156..153230TCONS_00050659-exon-scaffold_182-1575043694:153156..153230Clytia hemisphaericaexon
TCONS_00050659-exon-scaffold_182-1491911889:153609..153858TCONS_00050659-exon-scaffold_182-1491911889:153609..153858Clytia hemisphaericaexon
TCONS_00050659-exon-scaffold_182-1510915933:153609..153858TCONS_00050659-exon-scaffold_182-1510915933:153609..153858Clytia hemisphaericaexon
TCONS_00050659-exon-scaffold_182-1575043694:153609..153858TCONS_00050659-exon-scaffold_182-1575043694:153609..153858Clytia hemisphaericaexon
TCONS_00050659-exon-scaffold_182-1491911889:154009..154045TCONS_00050659-exon-scaffold_182-1491911889:154009..154045Clytia hemisphaericaexon
TCONS_00050659-exon-scaffold_182-1510915933:154009..154045TCONS_00050659-exon-scaffold_182-1510915933:154009..154045Clytia hemisphaericaexon
TCONS_00050659-exon-scaffold_182-1575043694:154009..154045TCONS_00050659-exon-scaffold_182-1575043694:154009..154045Clytia hemisphaericaexon
TCONS_00050659-exon-scaffold_182-1491911889:154406..154532TCONS_00050659-exon-scaffold_182-1491911889:154406..154532Clytia hemisphaericaexon
TCONS_00050659-exon-scaffold_182-1510915933:154406..154532TCONS_00050659-exon-scaffold_182-1510915933:154406..154532Clytia hemisphaericaexon
TCONS_00050659-exon-scaffold_182-1575043694:154406..154532TCONS_00050659-exon-scaffold_182-1575043694:154406..154532Clytia hemisphaericaexon
TCONS_00050659-exon-scaffold_182-1491911889:155060..155604TCONS_00050659-exon-scaffold_182-1491911889:155060..155604Clytia hemisphaericaexon
TCONS_00050659-exon-scaffold_182-1510915933:155060..155604TCONS_00050659-exon-scaffold_182-1510915933:155060..155604Clytia hemisphaericaexon
TCONS_00050659-exon-scaffold_182-1575043694:155060..155604TCONS_00050659-exon-scaffold_182-1575043694:155060..155604Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_182supercontigscaffold_182:152310..155604 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
42.3285	36.9345	42.1355	48.0657	47.9775	34.5967	24.8715	30.1572	42.0045	33.6987	53.1967	36.3871	34.9798	32.8351	27.0956	25.6727	26.0338	28.0487	41.3907	46.8642	41.8984	40.9298	31.7312	35.9824	33.7763	35.0495	43.5787	44.856	34.385	31.4981
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050659 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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