TCONS_00050661 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050661
Unique NameTCONS_00050661
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050661 ID=TCONS_00050661|Name=TCONS_00050661|organism=Clytia hemisphaerica|type=transcript|length=363bp
aaatgatgagtaagcaaacgttataactcttatttaaaaacaaaaccgtA
TCGGTATCGGTACACAGTATCGGTTAAAATATAATCtgattgaaaaatca
aattcgtttttatttttctcattttcattttaggtTGATAGATAAAAATA
CAGCGGTGGTGTTTGCATTACAAAATTATGATGGATACATGACAGGTGTT
TTAAAGTCTCATGTTATGTATGTATCAATTGGATGCCCAGCAAACCGACA
CCTCTTTCTCATTCCATCGAGAAGctCACATGGACATGATCATGAAAGTG
AAACAGATCAGacgGGTGTgattgaaatcaaaaaaagCGAAACATTATCG
ATGCATTTTGACC
Run BLAST on NCBI

transcript from alignment at scaffold_182:255..3838-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050661 ID=TCONS_00050661|Name=TCONS_00050661|organism=Clytia hemisphaerica|type=transcript|length=3584bp|location=Sequence derived from alignment at scaffold_182:255..3838- (Clytia hemisphaerica)
AAATGATGAGTAAGCAAACGTTATAACTCTTATTTAAAAACAAAACCGTA
TCGGTATCGGTACACAGTATCGGTTAAAATATAATCTGATTGAAAAATCA
AATTCGTTTTTATTTTTCTCATTTTCATTTTAGGTTGATAGATAAAAATA
CAGCGGTGGTGTTTGCATTACAAAATTATGATGGATACATGACAGGTGTT
TTAAAGTCTCATGTAAGATTCTACAACAGATACTACGTCATTATTCGATT
CTAAACGTGGATATAAACGTTTTGCATTGGGCTGTGTTGGAACATTCCAT
TTTATATCCATACAGGGGGTTGGACGAATATTTCCAGAGGGTTATCCGAG
AAAAGTTTCCAGGGGGTGTTTTTTCATTTTTCCAAGGGGATAAAAAGTTA
TTCTAACAAATATTAAGCGTAATCGCACGATGGGTTATTTTTTCTTATTT
GGCACGCCCTCAAAGAGAGCAATTAATCGTTAATTGCATCCTGTAGAGAG
CAATTAATCGTTAATCACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCTGATGAGTAAGCAAACGTTATAAC
TCTTATTTAAAAACAAAACCTTTAAATACAGTATCGGGTGAAATATAATT
TGATTGAAAAAATTCAAATCCGTTTTTATTTTTCTCATTTTCATTTTAGA
TTCATAGATAAAAATACAGCGGTGGTCTTTGCATTACAAAATTATGATGG
ATACATGACAGATGTTTTAAAGTCTCATGTAAGTTTCTACAACAGATAAT
ACATCTATATTCTAAAGGTGGATAAAAACGTTTCGCATTTGGCTGTATTG
GGGTATTCCATTTTTTATCCATACAGTGAGTTGGACGAATATTTCCAGAG
GGTTATCCGAGAAAAATTTCCAGGGGGTGTTTTTTCATTTTTCCAAGGGG
ATAAAAAGTTACTCTAACAAATATTAAGCGTAATTAGAAATTTCCAAGGA
GTAAAAGAGTAATTTTACTTCGTCCAACCTCGCTTTAAGGTATGAAAAGA
ATTTTACTAAGGGTATTTTTGATACCCAGGGGGTATCTACATATTTAGAA
TAATTCTTTTTTGACTTGAAAAGGTTCGTCCACCCCCTGCATGGTTTTTA
ATGGAACAGCCCGTTCAAGAGAAATTAATGGGTTTTGAAGAGGGCACTTT
TTGAAAGTTACTATGGATTTTAGACCATGTCTATTCAGATCTACATGAAG
CCGAATGTTCGATAATGATGTTAGTCCAAAAAATTGCCAATGAATTATTA
CAATTAATAGCGGCCGTTAGCATGAAGGTAGAGCATCCAGCTATGGTTGT
GGGTTCGATCCCCAGCCGGTTTATATCAAAGATTCCCAAAATGGTAGTTG
CTGCCTCTCTGCTTGATGCTCATCAATTAAAGAGACGCATCAAGGGTAAG
TGGAGAAATCCAGGGAAAGGAGTGGCACCCTCCTCTACTTTAGGCAGCTA
GAGAAAAGGGAGCATTCGGGTCGCCCTCAAATGTGGTCGCAAACTTATTA
CTTGCTACAATTAAATATCGAATTCTAATATTCACATTCAATGATCGTCT
AAAGGGCGTGAAACAGACTGTAATGATTTTGAAGAAATACAATTTTTAAA
TTGATGAATTCTAATATTTTATACTTAATAGGTTATGTATGTATCAATTG
GATGCCCAGCAAACCGACACCTCTTTCTCATTCCATCGAGAAGGTGAGTT
TCATATCATTACTGGTGAGAAGGCAACGGCAACTTTTGCGAGCAGAGAGC
ATGTAGTCAATATCTGATTTTTTTATTTTTCTAAAACAGCGATGCATTGT
GGGATTGTTTTGGGGTATTACAATAAAATTCCCTCGAGGAATTCCTAAGA
GATTTCTATTGTAATACCCCCGAATCAATCCCACAATGCATCGCTTTTTT
AGAAAAATCAACAACTCCAATAAGATCTATAAGATGGTTTCTAAGATAGT
AACCTTTAGAAATAAACTCCAGATTTCCGTAACTCGAACGAATTCGGCTT
CCCGTGCGTGTTCAAGTTACGCAGAGCACTCGCGGGTAATGGCTTCCCCA
GATTGAATGCGAAGGGTCCATAAGGGGAGGCGAATCTCTGCGAGGGTGAA
AAAAAAGTGAGCAAAACATAAGTTTCTGGAAAATGTTAGGAAAATTGCTA
TAAACTACAGTAGACGAAATTTTTTATCAAATTTAGAATATCATTTTCTG
TGCGTCAAATGCGAAAAGTTGGCAAAGGAAATAGACTCATTTGTTAAGTT
TTGTCCCTTGTGAAATTACGATTCTGTCAGACTTCACGGGGACCACTGAC
CTTTATATATCCCTGGACCAAGCTATATCTGCCATCTTTGATCGAAGTTT
TTTGAAAGTCGGTACCCGCAAATAAGCCATCATAGTGGTTGAAACTTTGC
CCAACGACAAACGGCGCTACATCATTAGTGTACAAGCGAAACTAGATCTA
GCGCTCTCTCCGCGGGTGCCAATTTCAAAAGTACTCCGATCGTAATATTT
TGCTTGGCCGGTATTGAGTAACTTGGTCCAGGGATATATAAAGGTCAGTG
ATGAGTACCCTCTAAATGGTAAACTATTATTTACACTCTTTTTTGATTTT
AAGCTCACATGGACATGATCATGAAAGTGAAACAGATCAGGTACACTTTC
GAACCACACAGACAAATTTTCGGGTGAATCCGCCAAATTTGCCAAATTTC
TTATCGTCAATAGCATACCGCAGTGATTCTAAAAATACTGTTTGTCCGAA
TTTTAGTCCCATCATCCTTTGCATTAATTGCTTTTGGAAGTCAATTACAC
TTATCGATAATACAAAAGTAATAACTAGTACGCATTACGAATCAAGATGA
AAAGGATTGTGGGATTGAATTTCGGTCAAATGTTAAAAGTAATAATTATG
ACGTTTGCATAGCGGTGTGCTATCGGAATTGCCGACAGCCAAAACAATCG
CTCAAATTTGAACGAAATTTATTTAACGAGCTTTACTGTGAAAAAGTTGA
AAAACTGATTGTCACTCATCTTCGTCCAGGTGCAGTTAGAGTTGGAAATT
TCTTTAAACCAATGTCATTTTGTTTTTTTTAGACGGGTGTGATTGAAATC
AAAAAAAGCGAAACATTATCGATGCATTTTGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032099XLOC_032099Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050661-exon-scaffold_182-1575043694:3627..3838TCONS_00050661-exon-scaffold_182-1575043694:3627..3838Clytia hemisphaericaexon
TCONS_00050661-exon-scaffold_182-1575043694:1696..1757TCONS_00050661-exon-scaffold_182-1575043694:1696..1757Clytia hemisphaericaexon
TCONS_00050661-exon-scaffold_182-1575043694:749..785TCONS_00050661-exon-scaffold_182-1575043694:749..785Clytia hemisphaericaexon
TCONS_00050661-exon-scaffold_182-1575043694:255..306TCONS_00050661-exon-scaffold_182-1575043694:255..306Clytia hemisphaericaexon
TCONS_00050661-exon-scaffold_182-1510915933:3627..3838TCONS_00050661-exon-scaffold_182-1510915933:3627..3838Clytia hemisphaericaexon
TCONS_00050661-exon-scaffold_182-1510915933:1696..1757TCONS_00050661-exon-scaffold_182-1510915933:1696..1757Clytia hemisphaericaexon
TCONS_00050661-exon-scaffold_182-1510915933:749..785TCONS_00050661-exon-scaffold_182-1510915933:749..785Clytia hemisphaericaexon
TCONS_00050661-exon-scaffold_182-1510915933:255..306TCONS_00050661-exon-scaffold_182-1510915933:255..306Clytia hemisphaericaexon
TCONS_00050661-exon-scaffold_182-1491911889:3627..3838TCONS_00050661-exon-scaffold_182-1491911889:3627..3838Clytia hemisphaericaexon
TCONS_00050661-exon-scaffold_182-1491911889:1696..1757TCONS_00050661-exon-scaffold_182-1491911889:1696..1757Clytia hemisphaericaexon
TCONS_00050661-exon-scaffold_182-1491911889:749..785TCONS_00050661-exon-scaffold_182-1491911889:749..785Clytia hemisphaericaexon
TCONS_00050661-exon-scaffold_182-1491911889:255..306TCONS_00050661-exon-scaffold_182-1491911889:255..306Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_182supercontigscaffold_182:255..3838 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.04862	12.1106	5.4318	5.49472	3.33413	5.39618	13.2211	13.2993	6.17282	7.30169	0.933603	3.50889	1.51543	2.99249	2.04416	1.53415	1.10416	4.00843	0	0.494068	0	0.377235	3.03051	4.25424	28.4263	29.3728	0.396817	0	1.62646	2.12832
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050661 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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