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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050668 ID=TCONS_00050668|Name=TCONS_00050668|organism=Clytia hemisphaerica|type=transcript|length=1954bp CAATCATTCTAGTTCAAGTTACTCCATCGTCCACAACAACTCCGACTTTC TTGggaactttttaaatttaacaAATCATATTTTGCCATGGAAAACTTCA AATTTGGAATTGTAATTTTTACTCTTTGCTTAGTTCTATGTCAATCGAGT TATTTATCAGGCTTGCTGAAACAGCACCATCACCTCAGTACTCGTGACGT CATGTCAACGCTGGAAGATGAATTTTTAGAATCTCTTTCGAAACGCGACG CtgtagaaaacgaaagtgaaagtgaataTGAGGGCGGCATGGAAGAGAGA AGTACAACAACAACACCCGAGATTTGGGCGTTTTGTAATAATGTTAATCC GTATTCGTTGAAGCAGTGCACATGCGAATCGTTAATATGCAAGGACGGAG AGCGCAGAACGTGTGTTTTCAGTTCGGTGCAGTTAAAAATGGCTTTGAGT TGCCATTTGAAACGAGCCGTCACAGAAATCACagatattgaaaatttaac tAAGAACGATTGCGAGTGTAAATTTCGAAGTTTGtaaagtagaaagtttt attcatttttacttttcttaaaagttatttttcatttgaaattaaatatt tcactAGATGTAgctcttgttttgattttaatttttattttacatagaTA CAGACACAGATTCTACAGACTCGATGACTTTGCCTTGATGTTGCAGAGAA CCGAATAACAAAACTACatAATAGATAGAgttgatattttacgtggatag cctaTAATCTAGGatttttagacagtctttcgatgaTTTTCACGAGGTCC ACGGTCAGCcagctcggctatctatgaactgaatgaaacattggaaggag tgggggattcgaaccgcgaatCCTTGGTTTTAGACGCTAACGTCTTTGAC TgcttggccatcgctccttgATTGGTAACATTTTAGGAATTTTAATCCAC AGTTTGTCTGAAAATACTGTAGATGAAAAATCCTCTCTTTTAACCGTAAT TTTGAGTTgagatttgaataatagagaGAATAGTTTACGTTATACATTGG GGATTTTAGGGaatttttttgtgtattttttgttCCCATCAAGGTGAAGA ATACTTCAATGTTATGTTCAAAAATCAAACGTGTactgttttaaatattt tcaaatcctAAATCCCTGGGAGTAGCTAAAAGGATTAGTAAATTTCTGTG CTAGAGAAGCGAGGAGCTTGTTTGCAGAAAGAGATATCTTGCCCAGGGTC ATTCGTCATTGGACTCCTAGGGTTGACTTTTGATAGGGAGCAAAAAAATA TACATCAAGAATTTTGGCGGAAATCAAATTTAATCTGatggttgtttttt atttgttgtttttttcgtttaaaaaactaaaatagcACAGACCTAGAAAC CACTGTCACTCTATGATCCAGTAAGAGATCTATCAATAGGCCAACCTTGA GGAaatcttttcaagaaaaagccCATTTTTGTTCAAGCTCAACTGGTTAA ATCACCTATCTAGAAATTTTTTTGCTGACATTTATAAAAGTAAAAGCAAG TAAAGAACTCCAACAGCAGAATTGTTTCAAGATCAAAATCCATTCCGATT aattccagatttttcaaatccCACTACACCTTGACCACAGTCTATTTCCG ActaacttagtcggccctaagtgaccaAATCTTAGCTTgttgactaaaat taaggccgactaaaaatttgggccaaattaaaagtttataactAAACTTC ccttattttccagtattttaagctttcttcTATTTTCCATCTtcttgtaa atttagaaatggcccaaaTCTTTAGTCGGTCTTGATTATTaatcggccct tagtgactacaTTTTGACGAGGTAACTAAAATTAGGACCGACTAAGTTTT GACCGATAAGGTACGTTGATTATCCAGTGAAGTAGATGAGGAGCATTTGA CGAG Run BLAST on NCBI protein sequence of TCONS_00050668-protein >TCONS_00050668-protein ID=TCONS_00050668-protein|Name=TCONS_00050668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MENFKFGIVIFTLCLVLCQSSYLSGLLKQHHHLSTRDVMSTLEDEFLESL SKRDAVENESESEYEGGMEERSTTTTPEIWAFCNNVNPYSLKQCTCESLI CKDGERRTCVFSSVQLKMALSCHLKRAVTEITDIENLTKNDCECKFRSL Run BLAST on NCBI transcript from alignment at scaffold_182:127447..133994- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050668 ID=TCONS_00050668|Name=TCONS_00050668|organism=Clytia hemisphaerica|type=transcript|length=6548bp|location=Sequence derived from alignment at scaffold_182:127447..133994- (Clytia hemisphaerica) CAATCATTCTAGTTCAAGTTACTCCATCGTCCACAACAACTCCGACTTTC
TTGGGAACTTTTTAAATTTAACAAATCATATTTTGCCATGGAAAACTTCA
AATTTGGAATTGTAATTTTTACTCTTTGCTTAGTTCTATGTAAGTTTTAT
TCTATAATTTTTATTTCGATGTGCAGTATTAATCCTGGACATTTTTGTTT
TCTTTTTCAAATTTCTCCTGGGAATTCACAAAGTTTTAACTGAATAAAGG
GCCTGTTACGAATTTTATTGCATTTTTGTCCATCCAACATGATTATTCAA
TGCGAGACCTTGAGGCTAGGAAAAGCAATATTTCAGTGTAAATTTTTCTT
CATATGAGAGTCATTTAGATAGACATTGGAAGGTAAAAAAGTAAGTAAGT
CTGCGACCGCAGTCGGAGACGACCCGAAGGCTCATCTTTCGATAGCTATC
TACCCGAAGGTAGGGGAGGGCGCCACTCTTTCTCCCTGGATTGCTCCACT
TAACCTTAATTGCTGATCATTAAGTAGAGAGGTATCAAGTACCATTTTGG
GAATCTTTGGTATGACCCGGCTGGGGGTTAAAGCCACAACCTTGCGAACC
GTAGCCGGATGCTCTACTACTGCACTACGGTCGCTTGGAAGGTAGATAAA
CGTCAGTTAAGATGAATTGCTCCACGTCCTCTAGATTGAGTTTCGGATGG
ACAAAATACACCAAATTTACTAGGTAAGGCTGTACTCAAGAGAAGCTTGT
TCCTTCAATATTAACAAAAAAATGAAAAATAAATTTTTAAAGTGTAAGAA
AGAAGAAGAATAATGGCTAATAATTTCAAAATTTTCAGAACACATAGCTT
CAAACATTTTCTGCAATAATTTAAATCTTTTATCTCAAGACGGCTCACAT
CCATATTCTAAGTTTGCGGTTTATTGGTCTATCTCACGTTACTCATAATA
CATAATCTACTATTTACTAATTCATTATTTATTTACTTCAAAATTTGCTA
TAACCTATAACGGAACTCTCATCCGGAACACCCTTTCTCACAGACCCGCT
GGGAACCCTTCCCACTGGAAAAATTGGGCAAAATATCATCCCCAGTGTAA
AATTACACCCTCACTTTTGTCCCCAGCAGAAAATTATGCTCCATTTTTTT
CCCCGCTGGATATAATCAAATAAGCAAATCCCCACTGCAAAATATTGTGC
TATTTTTTCCGTTCCCACTAAGTTTTCTGGCTAGAAAACAATTAATAGGG
TTCAAATCACGAAGGTATTTATTTGCCTTTCTTATTCGACAATAAATTTT
GAATTAATGATTTTTCTTTAATGATTTAGTGGATCGCATACAAAGGAAAT
TTGAAAACAAATATTTTAAGACCGAAATTTTTAGGTCAAATATCATAATA
TGGTTATGCCATCTGTTTTCAAATCAAATATTGTTCAAATAATATTTCAA
ATTATTCCAACTATTATTTCAAATCCCTGTTAAAAAGGTTATTCTGATTG
GGGTATTCTCATATGGAAATTTAGAAGCTGTTTCTGAAAAGATTTTGGGT
ATTTCCATCGGGCACATAAGACACGTAGGGCTAAAGGAGAAAGTCAAGGA
AAAATTATAGTCTTTAATTTTCACCCGCCATTGATTTGGGACGACAGATC
GAATCTCAATTCTATTTTTTTTTTAAATAATCCGTACGTTTTTGATGAAA
GAAAATGTCATTCCATATTGAAAAGATAACTTTGTGTGGATTAGGCCTAT
GAGAAAGATCTCTAAAAATTTGAGAGACTATTGTTCCAATTTTTAGCTCA
AAATTACCAGATTTTACGACCCTTTGAGGGAGTCAATTTTTTATATTAAG
TAATCTTGGGAACCTTTCAGAGACTTATCAATGCCAATTTATCGTTTTTG
TATCCCTTTGAGAGACTTTCGAGGGGTTAAAACAAAGTGACCTTATGGCT
TGCACATACCCGACATCCATTTTGCCCAAGTACACCCCCCCCCCGGTTTT
GTTCAGTCAAAATATGCGAAATTGTATTGCCCCTTTCATAAAGACGAAAA
GGTAATTCCAAACAAGAGCTAAAGCCATGGCCTCAAGAGTGAATACGTGT
CATACGCAGTTTATCAGAATCTGCTCGGAGATTGGTACTTTACATGTTGC
AAAATCAATTTTATTTATACTGTTAAATATTAATTTTGATAAAGTGGTCA
AAACAAACCAGCCTCCTTAGCTTGAGTCGAGTCAGAAAAGGATTCGATGT
ATTGATCTGAGAATTTCATTAAATGTTGATTTGATTTGGCAGAACTCACT
CAAACTCCCCGTTTTTTATTGTGTAAAATAAAACTTTCTTGTTTCTACTA
AATAACCTGTAGAATTCATAGAGCCATTCATAAAACAAGGGGGTTGACCA
TAATCAAAATATTTGTAAATAAGTGTAGGAAAAATTGAGATGGAAAGGTC
TTAGTCCTTATTAACGTTCTAACAACCACACTCTTTTCTTTTCGGGTAGA
ACCATTGGAAAATGTATGAAAAAGTTTATTAAGATCCTAGTAGAACCTCT
GCAGACCCTAGCCCGTGTTATGCCAAAGTATCACGGCGCTAGTGATATTT
TGAAATAAATAAATTTTCACGCGTTCGCCAAAACTAAATTTCGCAAATGG
AGCTTTTCGAAAAGTCTTGCTGGAAAAGATTTTTTCGAATTAACGACTTT
TCTCAAATTTTATCCCCGTTTTTTGCGTTAAATTGAGGGCTAAAATCTAG
CAATTACATATCTGAGAACTACGAAGCCGTCCAATAATGAACTTTTAAAG
ATACCATGATGGCTAATTCTAAGACCGAGTATTATTTTCGGAGCATGTCT
CAAAAACATGAAAATTAACATGATTTTTGAAGACCATTAGCCGACAGAAA
ATTAGCAAACCAATGATTTACTGCGAAGGATACCATGATGAAGTTTCGCT
GTAGGGGTGTTACCTAATTGCTTACGCCTTCATTTTCTCGAAAAACCGCA
AAAACTAAAAAGTGCTGACGACAGCAAAACTTGTCTTTTAAATAACTCCA
GTTTGGCTAAAGGTAGAAACATGAATTTGGACCAACCTTGTATATCATTA
AATGGATCAAGGGTAAGTGGAGAAATTCAGGGAAAGGAGTGGCACCCTCC
CCTACCTTCAGGTAGACAGCTATACGAAAAGGGAGCCTTCGGGTCGCCCT
CGACTGCGGTCGCAAACTTACTTACAGGAAAAAACAGCGAGAGAGTTTCG
AAGAAAACGTCAAACTTAACCAGCACTAAACCTTTTCCGGCAAAAAAATC
CGTTTGCGAATTTCCTTCGGTTTTGGGCTTATTTNAAACCTTTTCCGGCA
AAAAAAATCCGTTTGCGAATTTCCTTCGGTTTTGGGCTTATTTCTTAGAT
AGTGATTTCTCTTAGACTATAGCAAAGTCTAGTTTTGTTTACAAGTATTC
TCTGCAAAGAACTTCTGGATACGGAAGCCTGATATAAGATCGAAACTTCG
AATTAAAGATTTTTTCTTGTTCACTGGAAATAAGCATTAGTAAAGGAAAT
CTTCAACTAGAAATAAAAATGAAAATGTTTTGATAGAATTATTGAACAAT
ATGGTCATACTAACTCTCTTAAATTGAAATAATGTAAATGCTATTTTTCA
TACCTTCTGTTACCCCCGCAAAGACGATATTTACAATCAGTTTACTGATT
GTTTACCTGTCGATCAGTTTTTTTTATTTCCATTTTCATTTTCCCTCATT
CATCATATGCTACACATAAAATCCTATCATGAACCTCAAAATGCAAAAAG
AAACTATTTTCAATATTTTCAATTTCAAAGAATGTTGAAATTAGGAGATT
TGTTTTGAGGTTTCGGTGATAAATAAGATTGATTGTGAAAAAGGTCTAGT
TCTTTGTTTTTAATAAGATGTACTGTGAAGTCGGGTAACTTGCATCAGTA
GAGGGAAACTTGCATAGCCATCAAATGACTGACCAATCAAAGCAGCAAAG
TTTCAAAACAAATAAACTACGCTGCTTTGCTCGCTGCTCTACTCTACAAT
TTTTGTTTTGATTTAACTTTGTATTTTAATTTTAATGCCAGGTCATTCAT
TTGAGGGCTATGTATGTTAGCCTCCACTGATGCAAGTTACCCTATCTCAC
GGTATTTATTAGTCCAATTTGTGAGTCTAATAGAGCTCCTTATCTCACCA
TCACACCAAAAATAGCCCCCAGTGCCCGCTCCTTATCTAAAGAGTTGAGT
AGTCAAAAAATTTACACCTGATGTATAAGAACGTCAACATTTTTAAAGCC
TTATTGGACCTTTTGGGTTTTAAAGCGTTAAACATGTTCTTACAATGTTC
TTTGAAGAGGTTTCGTTATTGTATTGACTTTTCTCCATTGGAAGGATCTT
GGTTTGATAGACCTTTTCATAAATTACGTCACGAACATCACTTGCCTCGT
ATTCAAACAATTGCCATGGTGATTTATGTCTTGATTATTTTTTCAGGTCA
ATCGAGTTATTTATCAGGCTTGCTGAAACAGCACCATCACCTCAGTACTC
GTGACGTCATGTCAACGCTGGAAGATGAATTTTTAGAATCTCTTTCGAAA
CGCGACGCTGTAGAAAACGAAAGTGAAAGTGAATATGAGGGCGGCATGGA
AGAGAGAAGTACAACAACAACACCCGAGATTTGGGCGTTTTGTAATAATG
TTAATCCGTATTCGTTGAAGCAGTGCACATGCGAATCGTTAATATGCAAG
GACGGAGAGCGCAGAACGTGTGTTTTCAGTTCGGTGCAGTTAAAAATGGC
TTTGAGTTGCCATTTGAAACGAGCCGTCACAGAAATCACAGATATTGAAA
ATTTAACTAAGAACGATTGCGAGTGTAAATTTCGAAGTTTGTAAAGTAGA
AAGTTTTATTCATTTTTACTTTTCTTAAAAGTTATTTTTCATTTGAAATT
AAATATTTCACTAGATGTAGCTCTTGTTTTGATTTTAATTTTTATTTTAC
ATAGATACAGACACAGATTCTACAGACTCGATGACTTTGCCTTGATGTTG
CAGAGAACCGAATAACAAAACTACATAATAGATAGACTAGAATCTACTTT
TGGCTGAACTTTGCTTTTTGCTAATTTTTTATGACGCTGAGTCCAGTAAA
GTAGACTAGGAGCGTTTGGCGAGGTCGCCATTTTGAAAAAAAATGTTGAA
AAATCCAAATAACAATAAAACTACTTAGCAAAAGCATTTTACCATATACT
ACCGGGCCACTTAATCACGCCATCCAGTCTATAAAAAAGCTTTAAGTGGA
CCCCGGGCTACATAATAGATAGAGTTGATATTTTACGTGGATAGCCTATA
ATCTAGGATTTTTAGACAGTCTTTCGATGATTTTCACGAGGTCCACGGTC
AGCCAGCTCGGCTATCTATGAACTGAATGAAACATTGGAAGGAGTGGGGG
ATTCGAACCGCGAATCCTTGGTTTTAGACGCTAACGTCTTTGACTGCTTG
GCCATCGCTCCTTGATTGGTAACATTTTAGGAATTTTAATCCACAGTTTG
TCTGAAAATACTGTAGATGAAAAATCCTCTCTTTTAACCGTAATTTTGAG
TTGAGATTTGAATAATAGAGAGAATAGTTTACGTTATACATTGGGGATTT
TAGGGAATTTTTTTGTGTATTTTTTGTTCCCATCAAGGTGAAGAATACTT
CAATGTTATGTTCAAAAATCAAACGTGTACTGTTTTAAATATTTTCAAAT
CCTAAATCCCTGGGAGTAGCTAAAAGGATTAGTAAATTTCTGTGCTAGAG
AAGCGAGGAGCTTGTTTGCAGAAAGAGATATCTTGCCCAGGGTCATTCGT
CATTGGACTCCTAGGGTTGACTTTTGATAGGGAGCAAAAAAATATACATC
AAGAATTTTGGCGGAAATCAAATTTAATCTGATGGTTGTTTTTTATTTGT
TGTTTTTTTCGTTTAAAAAACTAAAATAGCACAGACCTAGAAACCACTGT
CACTCTATGATCCAGTAAGAGATCTATCAATAGGCCAACCTTGAGGAAAT
CTTTTCAAGAAAAAGCCCATTTTTGTTCAAGCTCAACTGGTTAAATCACC
TATCTAGAAATTTTTTTGCTGACATTTATAAAAGTAAAAGCAAGTAAAGA
ACTCCAACAGCAGAATTGTTTCAAGATCAAAATCCATTCCGATTAATTCC
AGATTTTTCAAATCCCACTACACCTTGACCACAGTCTATTTCCGACTAAC
TTAGTCGGCCCTAAGTGACCAAATCTTAGCTTGTTGACTAAAATTAAGGC
CGACTAAAAATTTGGGCCAAATTAAAAGTTTATAACTAAACTTCCCTTAT
TTTCCAGTATTTTAAGCTTTCTTCTATTTTCCATCTTCTTGTAAATTTAG
AAATGGCCCAAATCTTTAGTCGGTCTTGATTATTAATCGGCCCTTAGTGA
CTACATTTTGACGAGGTAACTAAAATTAGGACCGACTAAGTTTTGACCGA
TAAGGTACGTTGATTATCCAGTGAAGTAGATGAGGAGCATTTGACGAG Coding sequence (CDS) from alignment at scaffold_182:127447..133994- >TCONS_00050668 ID=TCONS_00050668|Name=TCONS_00050668|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_182:127447..133994- (Clytia hemisphaerica) GTCAATCGAGTTATTTATCAGGCTTGCTGAAACAGCACCATCACCTCAGT ACTCGTGACGTCATGTCAACGCTGGAAGATGAATTTTTAGAATCTCTTTC GAAACGCGACGCTGTAGAAAACGAAAGTGAAAGTGAATATGAGGGCGGCA TGGAAGAGAGAAGTACAACAACAACACCCGAGATTTGGGCGTTTTGTAAT AATGTTAATCCGTATTCGTTGAAGCAGTGCACATGCGAATCGTTAATATG CAAGGACGGAGAGCGCAGAACGTGTGTTTTCAGTTCGGTGCAGTTAAAAA TGGCTTTGAGTTGCCATTTGAAACGAGCCGTCACAGAAATCACAGATATT GAAAATTTAACTAAGAACGATTGCGAGTGTAAATTTCGAAGTTTGTAAAT GGAAAACTTCAAATTTGGAATTGTAATTTTTACTCTTTGCTTAGTTCTAT GTCAATCGAGTTATTTATCAGGCTTGCTGAAACAGCACCATCACCTCAGT ACTCGTGACGTCATGTCAACGCTGGAAGATGAATTTTTAGAATCTCTTTC GAAACGCGACGCTGTAGAAAACGAAAGTGAAAGTGAATATGAGGGCGGCA TGGAAGAGAGAAGTACAACAACAACACCCGAGATTTGGGCGTTTTGTAAT AATGTTAATCCGTATTCGTTGAAGCAGTGCACATGCGAATCGTTAATATG CAAGGACGGAGAGCGCAGAACGTGTGTTTTCAGTTCGGTGCAGTTAAAAA TGGCTTTGAGTTGCCATTTGAAACGAGCCGTCACAGAAATCACAGATATT GAAAATTTAACTAAGAACGATTGCGAGTGTAAATTTCGAAGTTTGTAAAT GGAAAACTTCAAATTTGGAATTGTAATTTTTACTCTTTGCTTAGTTCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00050668-exon-scaffold_182-1575043694:133856..133994 | TCONS_00050668-exon-scaffold_182-1575043694:133856..133994 | Clytia hemisphaerica | exon |
TCONS_00050668-exon-scaffold_182-1575043694:128921..129498 | TCONS_00050668-exon-scaffold_182-1575043694:128921..129498 | Clytia hemisphaerica | exon |
TCONS_00050668-exon-scaffold_182-1575043694:127447..128683 | TCONS_00050668-exon-scaffold_182-1575043694:127447..128683 | Clytia hemisphaerica | exon |
TCONS_00050668-exon-scaffold_182-1510915933:133856..133994 | TCONS_00050668-exon-scaffold_182-1510915933:133856..133994 | Clytia hemisphaerica | exon |
TCONS_00050668-exon-scaffold_182-1510915933:128921..129498 | TCONS_00050668-exon-scaffold_182-1510915933:128921..129498 | Clytia hemisphaerica | exon |
TCONS_00050668-exon-scaffold_182-1510915933:127447..128683 | TCONS_00050668-exon-scaffold_182-1510915933:127447..128683 | Clytia hemisphaerica | exon |
TCONS_00050668-exon-scaffold_182-1491911889:133856..133994 | TCONS_00050668-exon-scaffold_182-1491911889:133856..133994 | Clytia hemisphaerica | exon |
TCONS_00050668-exon-scaffold_182-1491911889:128921..129498 | TCONS_00050668-exon-scaffold_182-1491911889:128921..129498 | Clytia hemisphaerica | exon |
TCONS_00050668-exon-scaffold_182-1491911889:127447..128683 | TCONS_00050668-exon-scaffold_182-1491911889:127447..128683 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_182 | supercontig | scaffold_182:127447..133994 - |
Blast
The following BLAST results are available for this feature:
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