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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050669 ID=TCONS_00050669|Name=TCONS_00050669|organism=Clytia hemisphaerica|type=transcript|length=2281bp
TTTTAGGGTCCCCTGTTTTAGTCCCCCCTATTATAAGTATTGTTTGGATT
TTCGTGCAAATAGATTTTAACATAGGGGAATCTGGAAAAACAATCATTCT
AGTTCAAGTTACTCCATCGTCCACAACAACTCCGACTTTCTTGggaactt
tttaaatttaacaAATCATATTTTGCCATGGAAAACTTCAAATTTGGAAT
TGTAATTTTTACTCTTTGCTTAGTTCTATGTCAATCGAGTTATTTATCAG
GCTTGCTGAAACAGCACCATCACCTCAGTACTCGTGACGTCATGTCAACG
CTGGAAGATGAATTTTTAGAATCTCTTTCGAAACGCGACGCtgtagaaaa
cgaaagtgaaagtgaataTGAGGGCGGCATGGAAGAGAGAAGTACAACAA
CAACACCCGAGATTTGGGCGTTTTGTAATAATGTTAATCCGTATTCGTTG
AAGCAGTGCACATGCGAATCGTTAATATGCAAGGACGGAGAGCGCAGAAC
GTGTGTTTTCAGTTCGGTGCAGTTAAAAATGGCTTTGAGTTGCCATTTGA
AACGAGCCGTCACAGAAATCACagatattgaaaatttaactAAGAACGAT
TGCGAGTGTAAATTTCGAAGTTTGtaaagtagaaagttttattcattttt
acttttcttaaaagttatttttcatttgaaattaaatatttcactAGATG
TAgctcttgttttgattttaatttttattttacatagaTACAGACACAGA
TTCTACAGACTCGATGACTTTGCCTTGATGTTGCAGAGAACCGAATAACA
AAACTACATAATAGATAGACTAGaatctacttttggctgaactttgcttt
ttgctaattttttatgacgctgagtccagtaaagtagactaggagcgttt
ggcgaggtcgccattttgaaaaaaaatgttgaaaaatccaaataacaata
aaactacttagCAAAAGCAttttaccatatactaccgggccacttaatca
cgccatccagtctataaaaaagctttaagtggaccccgggctacatAATA
GATAGAgttgatattttacgtggatagcctaTAATCTAGGatttttagac
agtctttcgatgaTTTTCACGAGGTCCACGGTCAGCcagctcggctatct
atgaactgaatgaaacattggaaggagtgggggattcgaaccgcgaatCC
TTGGTTTTAGACGCTAACGTCTTTGACTgcttggccatcgctccttgATT
GGTAACATTTTAGGAATTTTAATCCACAGTTTGTCTGAAAATACTGTAGA
TGAAAAATCCTCTCTTTTAACCGTAATTTTGAGTTgagatttgaataata
gagaGAATAGTTTACGTTATACATTGGGGATTTTAGGGaatttttttgtg
tattttttgttCCCATCAAGGTGAAGAATACTTCAATGTTATGTTCAAAA
ATCAAACGTGTactgttttaaatattttcaaatcctAAATCCCTGGGAGT
AGCTAAAAGGATTAGTAAATTTCTGTGCTAGAGAAGCGAGGAGCTTGTTT
GCAGAAAGAGATATCTTGCCCAGGGTCATTCGTCATTGGACTCCTAGGGT
TGACTTTTGATAGGGAGCAAAAAAATATACATCAAGAATTTTGGCGGAAA
TCAAATTTAATCTGatggttgttttttatttgttgtttttttcgtttaaa
aaactaaaatagcACAGACCTAGAAACCACTGTCACTCTATGATCCAGTA
AGAGATCTATCAATAGGCCAACCTTGAGGAaatcttttcaagaaaaagcc
CATTTTTGTTCAAGCTCAACTGGTTAAATCACCTATCTAGAAATTTTTTT
GCTGACATTTATAAAAGTAAAAGCAAGTAAAGAACTCCAACAGCAGAATT
GTTTCAAGATCAAAATCCATTCCGATTaattccagatttttcaaatccCA
CTACACCTTGACCACAGTCTATTTCCGActaacttagtcggccctaagtg
accaAATCTTAGCTTgttgactaaaattaaggccgactaaaaatttgggc
caaattaaaagtttataactAAACTTCccttattttccagtattttaagc
tttcttcTATTTTCCATCTtcttgtaaatttagaaatggcccaaaTCTTT
AGTCGGTCTTGATTATTaatcggcccttagtgactacaTTTTGACGAGGT
AACTAAAATTAGGACCGACTAAGTTTTGACCGATAAGGTACGTTGATTAT
CCAGTGAAGTAGATGAGGAGCATTTGACGAG Run BLAST on NCBI transcript from alignment at scaffold_182:127447..134084- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050669 ID=TCONS_00050669|Name=TCONS_00050669|organism=Clytia hemisphaerica|type=transcript|length=6638bp|location=Sequence derived from alignment at scaffold_182:127447..134084- (Clytia hemisphaerica)
TTTTAGGGTCCCCTGTTTTAGTCCCCCCTATTATAAGTATTGTTTGGATT
TTCGTGCAAATAGATTTTAACATAGGGGAATCTGGAAAAACAATCATTCT
AGTTCAAGTTACTCCATCGTCCACAACAACTCCGACTTTCTTGGGAACTT
TTTAAATTTAACAAATCATATTTTGCCATGGAAAACTTCAAATTTGGAAT
TGTAATTTTTACTCTTTGCTTAGTTCTATGTAAGTTTTATTCTATAATTT
TTATTTCGATGTGCAGTATTAATCCTGGACATTTTTGTTTTCTTTTTCAA
ATTTCTCCTGGGAATTCACAAAGTTTTAACTGAATAAAGGGCCTGTTACG
AATTTTATTGCATTTTTGTCCATCCAACATGATTATTCAATGCGAGACCT
TGAGGCTAGGAAAAGCAATATTTCAGTGTAAATTTTTCTTCATATGAGAG
TCATTTAGATAGACATTGGAAGGTAAAAAAGTAAGTAAGTCTGCGACCGC
AGTCGGAGACGACCCGAAGGCTCATCTTTCGATAGCTATCTACCCGAAGG
TAGGGGAGGGCGCCACTCTTTCTCCCTGGATTGCTCCACTTAACCTTAAT
TGCTGATCATTAAGTAGAGAGGTATCAAGTACCATTTTGGGAATCTTTGG
TATGACCCGGCTGGGGGTTAAAGCCACAACCTTGCGAACCGTAGCCGGAT
GCTCTACTACTGCACTACGGTCGCTTGGAAGGTAGATAAACGTCAGTTAA
GATGAATTGCTCCACGTCCTCTAGATTGAGTTTCGGATGGACAAAATACA
CCAAATTTACTAGGTAAGGCTGTACTCAAGAGAAGCTTGTTCCTTCAATA
TTAACAAAAAAATGAAAAATAAATTTTTAAAGTGTAAGAAAGAAGAAGAA
TAATGGCTAATAATTTCAAAATTTTCAGAACACATAGCTTCAAACATTTT
CTGCAATAATTTAAATCTTTTATCTCAAGACGGCTCACATCCATATTCTA
AGTTTGCGGTTTATTGGTCTATCTCACGTTACTCATAATACATAATCTAC
TATTTACTAATTCATTATTTATTTACTTCAAAATTTGCTATAACCTATAA
CGGAACTCTCATCCGGAACACCCTTTCTCACAGACCCGCTGGGAACCCTT
CCCACTGGAAAAATTGGGCAAAATATCATCCCCAGTGTAAAATTACACCC
TCACTTTTGTCCCCAGCAGAAAATTATGCTCCATTTTTTTCCCCGCTGGA
TATAATCAAATAAGCAAATCCCCACTGCAAAATATTGTGCTATTTTTTCC
GTTCCCACTAAGTTTTCTGGCTAGAAAACAATTAATAGGGTTCAAATCAC
GAAGGTATTTATTTGCCTTTCTTATTCGACAATAAATTTTGAATTAATGA
TTTTTCTTTAATGATTTAGTGGATCGCATACAAAGGAAATTTGAAAACAA
ATATTTTAAGACCGAAATTTTTAGGTCAAATATCATAATATGGTTATGCC
ATCTGTTTTCAAATCAAATATTGTTCAAATAATATTTCAAATTATTCCAA
CTATTATTTCAAATCCCTGTTAAAAAGGTTATTCTGATTGGGGTATTCTC
ATATGGAAATTTAGAAGCTGTTTCTGAAAAGATTTTGGGTATTTCCATCG
GGCACATAAGACACGTAGGGCTAAAGGAGAAAGTCAAGGAAAAATTATAG
TCTTTAATTTTCACCCGCCATTGATTTGGGACGACAGATCGAATCTCAAT
TCTATTTTTTTTTTAAATAATCCGTACGTTTTTGATGAAAGAAAATGTCA
TTCCATATTGAAAAGATAACTTTGTGTGGATTAGGCCTATGAGAAAGATC
TCTAAAAATTTGAGAGACTATTGTTCCAATTTTTAGCTCAAAATTACCAG
ATTTTACGACCCTTTGAGGGAGTCAATTTTTTATATTAAGTAATCTTGGG
AACCTTTCAGAGACTTATCAATGCCAATTTATCGTTTTTGTATCCCTTTG
AGAGACTTTCGAGGGGTTAAAACAAAGTGACCTTATGGCTTGCACATACC
CGACATCCATTTTGCCCAAGTACACCCCCCCCCCGGTTTTGTTCAGTCAA
AATATGCGAAATTGTATTGCCCCTTTCATAAAGACGAAAAGGTAATTCCA
AACAAGAGCTAAAGCCATGGCCTCAAGAGTGAATACGTGTCATACGCAGT
TTATCAGAATCTGCTCGGAGATTGGTACTTTACATGTTGCAAAATCAATT
TTATTTATACTGTTAAATATTAATTTTGATAAAGTGGTCAAAACAAACCA
GCCTCCTTAGCTTGAGTCGAGTCAGAAAAGGATTCGATGTATTGATCTGA
GAATTTCATTAAATGTTGATTTGATTTGGCAGAACTCACTCAAACTCCCC
GTTTTTTATTGTGTAAAATAAAACTTTCTTGTTTCTACTAAATAACCTGT
AGAATTCATAGAGCCATTCATAAAACAAGGGGGTTGACCATAATCAAAAT
ATTTGTAAATAAGTGTAGGAAAAATTGAGATGGAAAGGTCTTAGTCCTTA
TTAACGTTCTAACAACCACACTCTTTTCTTTTCGGGTAGAACCATTGGAA
AATGTATGAAAAAGTTTATTAAGATCCTAGTAGAACCTCTGCAGACCCTA
GCCCGTGTTATGCCAAAGTATCACGGCGCTAGTGATATTTTGAAATAAAT
AAATTTTCACGCGTTCGCCAAAACTAAATTTCGCAAATGGAGCTTTTCGA
AAAGTCTTGCTGGAAAAGATTTTTTCGAATTAACGACTTTTCTCAAATTT
TATCCCCGTTTTTTGCGTTAAATTGAGGGCTAAAATCTAGCAATTACATA
TCTGAGAACTACGAAGCCGTCCAATAATGAACTTTTAAAGATACCATGAT
GGCTAATTCTAAGACCGAGTATTATTTTCGGAGCATGTCTCAAAAACATG
AAAATTAACATGATTTTTGAAGACCATTAGCCGACAGAAAATTAGCAAAC
CAATGATTTACTGCGAAGGATACCATGATGAAGTTTCGCTGTAGGGGTGT
TACCTAATTGCTTACGCCTTCATTTTCTCGAAAAACCGCAAAAACTAAAA
AGTGCTGACGACAGCAAAACTTGTCTTTTAAATAACTCCAGTTTGGCTAA
AGGTAGAAACATGAATTTGGACCAACCTTGTATATCATTAAATGGATCAA
GGGTAAGTGGAGAAATTCAGGGAAAGGAGTGGCACCCTCCCCTACCTTCA
GGTAGACAGCTATACGAAAAGGGAGCCTTCGGGTCGCCCTCGACTGCGGT
CGCAAACTTACTTACAGGAAAAAACAGCGAGAGAGTTTCGAAGAAAACGT
CAAACTTAACCAGCACTAAACCTTTTCCGGCAAAAAAATCCGTTTGCGAA
TTTCCTTCGGTTTTGGGCTTATTTNAAACCTTTTCCGGCAAAAAAAATCC
GTTTGCGAATTTCCTTCGGTTTTGGGCTTATTTCTTAGATAGTGATTTCT
CTTAGACTATAGCAAAGTCTAGTTTTGTTTACAAGTATTCTCTGCAAAGA
ACTTCTGGATACGGAAGCCTGATATAAGATCGAAACTTCGAATTAAAGAT
TTTTTCTTGTTCACTGGAAATAAGCATTAGTAAAGGAAATCTTCAACTAG
AAATAAAAATGAAAATGTTTTGATAGAATTATTGAACAATATGGTCATAC
TAACTCTCTTAAATTGAAATAATGTAAATGCTATTTTTCATACCTTCTGT
TACCCCCGCAAAGACGATATTTACAATCAGTTTACTGATTGTTTACCTGT
CGATCAGTTTTTTTTATTTCCATTTTCATTTTCCCTCATTCATCATATGC
TACACATAAAATCCTATCATGAACCTCAAAATGCAAAAAGAAACTATTTT
CAATATTTTCAATTTCAAAGAATGTTGAAATTAGGAGATTTGTTTTGAGG
TTTCGGTGATAAATAAGATTGATTGTGAAAAAGGTCTAGTTCTTTGTTTT
TAATAAGATGTACTGTGAAGTCGGGTAACTTGCATCAGTAGAGGGAAACT
TGCATAGCCATCAAATGACTGACCAATCAAAGCAGCAAAGTTTCAAAACA
AATAAACTACGCTGCTTTGCTCGCTGCTCTACTCTACAATTTTTGTTTTG
ATTTAACTTTGTATTTTAATTTTAATGCCAGGTCATTCATTTGAGGGCTA
TGTATGTTAGCCTCCACTGATGCAAGTTACCCTATCTCACGGTATTTATT
AGTCCAATTTGTGAGTCTAATAGAGCTCCTTATCTCACCATCACACCAAA
AATAGCCCCCAGTGCCCGCTCCTTATCTAAAGAGTTGAGTAGTCAAAAAA
TTTACACCTGATGTATAAGAACGTCAACATTTTTAAAGCCTTATTGGACC
TTTTGGGTTTTAAAGCGTTAAACATGTTCTTACAATGTTCTTTGAAGAGG
TTTCGTTATTGTATTGACTTTTCTCCATTGGAAGGATCTTGGTTTGATAG
ACCTTTTCATAAATTACGTCACGAACATCACTTGCCTCGTATTCAAACAA
TTGCCATGGTGATTTATGTCTTGATTATTTTTTCAGGTCAATCGAGTTAT
TTATCAGGCTTGCTGAAACAGCACCATCACCTCAGTACTCGTGACGTCAT
GTCAACGCTGGAAGATGAATTTTTAGAATCTCTTTCGAAACGCGACGCTG
TAGAAAACGAAAGTGAAAGTGAATATGAGGGCGGCATGGAAGAGAGAAGT
ACAACAACAACACCCGAGATTTGGGCGTTTTGTAATAATGTTAATCCGTA
TTCGTTGAAGCAGTGCACATGCGAATCGTTAATATGCAAGGACGGAGAGC
GCAGAACGTGTGTTTTCAGTTCGGTGCAGTTAAAAATGGCTTTGAGTTGC
CATTTGAAACGAGCCGTCACAGAAATCACAGATATTGAAAATTTAACTAA
GAACGATTGCGAGTGTAAATTTCGAAGTTTGTAAAGTAGAAAGTTTTATT
CATTTTTACTTTTCTTAAAAGTTATTTTTCATTTGAAATTAAATATTTCA
CTAGATGTAGCTCTTGTTTTGATTTTAATTTTTATTTTACATAGATACAG
ACACAGATTCTACAGACTCGATGACTTTGCCTTGATGTTGCAGAGAACCG
AATAACAAAACTACATAATAGATAGACTAGAATCTACTTTTGGCTGAACT
TTGCTTTTTGCTAATTTTTTATGACGCTGAGTCCAGTAAAGTAGACTAGG
AGCGTTTGGCGAGGTCGCCATTTTGAAAAAAAATGTTGAAAAATCCAAAT
AACAATAAAACTACTTAGCAAAAGCATTTTACCATATACTACCGGGCCAC
TTAATCACGCCATCCAGTCTATAAAAAAGCTTTAAGTGGACCCCGGGCTA
CATAATAGATAGAGTTGATATTTTACGTGGATAGCCTATAATCTAGGATT
TTTAGACAGTCTTTCGATGATTTTCACGAGGTCCACGGTCAGCCAGCTCG
GCTATCTATGAACTGAATGAAACATTGGAAGGAGTGGGGGATTCGAACCG
CGAATCCTTGGTTTTAGACGCTAACGTCTTTGACTGCTTGGCCATCGCTC
CTTGATTGGTAACATTTTAGGAATTTTAATCCACAGTTTGTCTGAAAATA
CTGTAGATGAAAAATCCTCTCTTTTAACCGTAATTTTGAGTTGAGATTTG
AATAATAGAGAGAATAGTTTACGTTATACATTGGGGATTTTAGGGAATTT
TTTTGTGTATTTTTTGTTCCCATCAAGGTGAAGAATACTTCAATGTTATG
TTCAAAAATCAAACGTGTACTGTTTTAAATATTTTCAAATCCTAAATCCC
TGGGAGTAGCTAAAAGGATTAGTAAATTTCTGTGCTAGAGAAGCGAGGAG
CTTGTTTGCAGAAAGAGATATCTTGCCCAGGGTCATTCGTCATTGGACTC
CTAGGGTTGACTTTTGATAGGGAGCAAAAAAATATACATCAAGAATTTTG
GCGGAAATCAAATTTAATCTGATGGTTGTTTTTTATTTGTTGTTTTTTTC
GTTTAAAAAACTAAAATAGCACAGACCTAGAAACCACTGTCACTCTATGA
TCCAGTAAGAGATCTATCAATAGGCCAACCTTGAGGAAATCTTTTCAAGA
AAAAGCCCATTTTTGTTCAAGCTCAACTGGTTAAATCACCTATCTAGAAA
TTTTTTTGCTGACATTTATAAAAGTAAAAGCAAGTAAAGAACTCCAACAG
CAGAATTGTTTCAAGATCAAAATCCATTCCGATTAATTCCAGATTTTTCA
AATCCCACTACACCTTGACCACAGTCTATTTCCGACTAACTTAGTCGGCC
CTAAGTGACCAAATCTTAGCTTGTTGACTAAAATTAAGGCCGACTAAAAA
TTTGGGCCAAATTAAAAGTTTATAACTAAACTTCCCTTATTTTCCAGTAT
TTTAAGCTTTCTTCTATTTTCCATCTTCTTGTAAATTTAGAAATGGCCCA
AATCTTTAGTCGGTCTTGATTATTAATCGGCCCTTAGTGACTACATTTTG
ACGAGGTAACTAAAATTAGGACCGACTAAGTTTTGACCGATAAGGTACGT
TGATTATCCAGTGAAGTAGATGAGGAGCATTTGACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050669-exon-scaffold_182-1575043694:133856..134084 | TCONS_00050669-exon-scaffold_182-1575043694:133856..134084 | Clytia hemisphaerica | exon |
| TCONS_00050669-exon-scaffold_182-1575043694:127447..129498 | TCONS_00050669-exon-scaffold_182-1575043694:127447..129498 | Clytia hemisphaerica | exon |
| TCONS_00050669-exon-scaffold_182-1510915933:133856..134084 | TCONS_00050669-exon-scaffold_182-1510915933:133856..134084 | Clytia hemisphaerica | exon |
| TCONS_00050669-exon-scaffold_182-1510915933:127447..129498 | TCONS_00050669-exon-scaffold_182-1510915933:127447..129498 | Clytia hemisphaerica | exon |
| TCONS_00050669-exon-scaffold_182-1491911889:133856..134084 | TCONS_00050669-exon-scaffold_182-1491911889:133856..134084 | Clytia hemisphaerica | exon |
| TCONS_00050669-exon-scaffold_182-1491911889:127447..129498 | TCONS_00050669-exon-scaffold_182-1491911889:127447..129498 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_182 | supercontig | scaffold_182:127447..134084 - |
Blast
The following BLAST results are available for this feature:
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