TCONS_00050671 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050671
Unique NameTCONS_00050671
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1090

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050671 ID=TCONS_00050671|Name=TCONS_00050671|organism=Clytia hemisphaerica|type=transcript|length=1090bp
AGAATTTTCTTTAGGATTGAAAGGAGTCCAGGTTTTAATTGAAAAAACTA
AATCCAGgTTCAATCCTTGGCAAAGTGATTCTGAgcaaatcaaaaatata
tttgatgtACAAATTGAAGTTGCTGACTCACCTTGCATTTGGGAATTCAA
TCTAGAGCATGCAGATCATTTTCCAGATGTGATATTTGCTGAAGAAGACG
AAGAGTTTAATCCGGATATTACCTCATACACTagcttGTCTGACTGGGAC
ATTAAGAAAGACACAAAATTGCAAGAGTTTGTTCTGGAACTTTCTCGATC
ATATGTGCAATATCAAAAAGAGAAACTTCAATGCTACGATcaaataaaag
aagaatttcAAATATTCTTCAAGGACCATTCAGAACTGGCTAATGAATGT
GAACTACAGATTGCGAAAGGAGGGCAGAAAGCACATACATACAGTGATAT
CATAACATTTTTGGTTCCGATCAAATGTGACTGTTCAGATGTACCACCAA
CATTCAAAAAGaAGAATTCAGGGAAGGATGTATCATATCTTCACATAAAA
TACGAATCACCAAATCAAACATCAGTCTCCTCAAAATTGATTCTCAACAA
CTCGCTCATCAGTGTGTTAGGTGGCAGCTCAAATCTTCGGATTCCATCAT
ATGGTTCTTTAAGTTTATCAAAGTATGTGGAGAAAGTGACTAAGCTTGTA
CAAAATACTGTCGAAATGGTCAGTCAGGGATATCAAATGCGAAGACATTT
CATATCATTACTAATCAAAGAACTTGGAAGCTCAGCAATAGTTGAATATG
ATACCAAATTGTTCCTTGAAGCATGTTTTATGGTGGAACGCGAGGATGGT
TTTGCTTGTTTGCTTCTTGTTTCATTGACGCGTCTTTATTCTGAAAAATC
TCCGAAGATGGTGCTACAATCCATTTACAATGTGGACGGTGCTTCAAAGT
TACCGAAACTTCAAGTGCCCTTAGAAGGATGTTTCCAAGATGTTGCTGGT
GCTGGTGATGGTGTTGGAGAATGCAATGAGAATGAAGACATCAGAGTGGC
GTTCATACGGTAAGTCCGGTTAATGAGATGTAGCCAGACN
Run BLAST on NCBI

transcript from alignment at scaffold_182:137832..145297-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050671 ID=TCONS_00050671|Name=TCONS_00050671|organism=Clytia hemisphaerica|type=transcript|length=7466bp|location=Sequence derived from alignment at scaffold_182:137832..145297- (Clytia hemisphaerica)
AGAATTTTCTTTAGGATTGAAAGGAGTCCAGGTTTTAATTGAAAAAACTA
AATCCAGGTACAGTAAATTAAATTTCATAGACGGTACTATAAATCTAGTA
ATCGATAATGCCAGACGGTGTCAATCGAACAACTTCGAACAAAAATCGCA
ATCGAACCAATCGAACGTAATCGAACGCGATCGAATAATTGCGATTCGAT
TGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACCGATAAAAAAACA
GGTAAAACCAAACTATCAATTGGGCCTGCTGGCCTAAAGATTGACCCCCT
TATTTCCCAGCCATTTTCCCCGCCATTTTGTGTGACTTTGCCCTGGGTTT
CCTCAAGTAACTCATATCGCACATTCTGATTGGTCAGAGAAAATAAAAGT
GGTTTTCGCGCGTGAATCGTGTGCCTTAAAAAAATTGGTGGAACTAGACT
TGGTGTGACTTGGTTTCAGATTATTTTGAGGCGCTGCTACTGGAAACTGG
AAACATATTTGATAAAATCGGAGGCTGGAAAGTACTCAATATAATCAAAG
GTATTCAATATGATCGAAGGTAATCTCATGCAGCAAGTTACATGACTGGT
TATTTGCAAGTCCCATGGGGCGATAGGCGGTAAGGAGGTGGGCGTTCTCT
GATTCTCAAATTGGTGCCAGTCATTTTGAATGAAAACAAAAAAGTTAAAA
AGGGCACGCTATCAGTGAAAGTTATCGTGACGTGCTATGGCAGAAAGTAT
GATTGATAAACTCGGTGGAGTTATCAAAACAAATTTGTTGTCAAAGAGAT
TTAACAATACAGGCCAGATATCAACAGTCTCATGTTTCGACCAATTGTCC
CAAGTTAGCTCAGTTGAAGGTAGCCCACTACTCTAGAGCTTTATAGCAGA
GCATAGGTTGCTGGGCGACCGCCTCAATAGGCCATTGGAAAATCAGATAA
GAGCAAGCGGGTAAGTACCGCACGAGACGAGAGTGATTAATGCAAGCAAT
TGCAATTGAATCAATCAAACGTATAATATAATGAATACAATTGAATGTAA
AAAAACACTCAAATTTTTATCAGCATTGGGCCGATAAGCTTCAAACCCTC
TACCCCTATCGAGTTGATCTCACCTTTGCACCCGTTATCATTGATCTTGC
CTTTGCACCCGTTATTGTTGATCTCGCCTTTGCACCCATTATCGTTGAGT
TTTTGTCTATTTGCACCAACATTGAGTTTGTTCATACAACGCATTGATAT
TGTCAATCAAAACGAAAGTTAAAAAGGTGCAATGAAGTTGCAACATTTTG
AAAGAAAAGGCAGCGCCCTGGCCAATGAAAAAGTAGGTTTTTTTAAGCTA
ATTAAGCTAATTCAAAGCTGTACTTTTAAAGTTGCAAATTTGCGTGCGAA
GGTGAAAGCAAGTGAAATTGCATGCTTTTAGTGGAGTTTTTGGACGAAAT
GAGGAAGAAATTGGCAGAAAAGATTTTCTTCCTAATACTTGTTTTTTTAT
TGGTATGTAGTTGGACTCAGTCTCGGCCTTATCAGCCCAATGCCAATAAA
AAATTTGAAAGTTTTTTGTCAAGGGCCCCTAATCGGAGCAATCAAACGGC
AAATCCAGGGTAATATTGCTTTCGATTGAGTTCATTTGGCGTGCGATTCC
CTCGATTGACATCGTCTGGCTATATAGAACCCCCTCTGAACCCCCACCAG
AGACCAACAGTTTCATTAATGCACAGCTTTGCTGAGCAAATATCCTCATT
AGAAACTCAATCTAAATTTACAAAAGAAGCCATAGCTCAAAGTTCTTAGA
AAAATAACTACCCACTAGAAGTAGATGAGATTCAATCTGATCCAAAGGAA
GACCTCCCAAATCGTATGCCACCTGTAAAGGAAAATATTAATGTTTTTCT
ATAGACTTTTTGTAGGAGGTGATGTCATGTCGTTTTATGCAAGTTTTACT
TGTTGCATAATTTAGTTTGTCGACTTTTATATTATTTTTTTCATTTTAAA
GACATTATTTAAAATTTTTGTAGGTTCAATCCTTGGCAAAGTGATTCTGA
GCAAATCAAAAATATATTTGATGTACAAATTGAAGTTGCTGACTCACCTT
GCATTTGTATGTTTTAATTTTGAGGTTCAGATTTATAATTGTTTTCTCAA
TTGTACTATAATTGTACTAAACTAAANTATGTTTTCAGATTTATAATTGT
TTTCTTAATTGTACTATAATTGTACTAAACTAAAATGAAACCTTTGTTTT
TGATTTCAGTCAAATCCGCCAAATCCGCCAAATTTTCTTTCTGCCAAAAT
TTCTTCCTTTAAGGTAGATGATATTTAATTAGAAGTTGTTTTTGTGGAAT
ATTTTAACTAATTTTAAAACACGTTTCTTTTTTCAGGGGAATTCAATCTA
GAGCATGCAGATCATTTTCCAGATGTGATATTTGCTGAAGAAGACGAAGA
GTTTAATCCGGATATTACCTCATACACTGTGCATTTTTAAGAATCAGTTA
TTTTTATGTTCCACAATTCCTCAAAAACTTTCGATGGTCCACAGCAGTTT
TTAACTTAAGTCAATCTCTTGACCAAACTTTCCTCAGAACAGAACTTCTT
GTAAGCCTTTTTGATCATTAGAAATTGGATTCCCTTCTTCCACTTTTGTA
AAACAAACATTTTATCCTTGAAAATTTCAGAGCTTGTCTGACTGGGACAT
TAAGAAAGACACAAAATTGCAAGAGTTTGTTCTGGAACTTTCTCGATCAT
ATGTGCAATATCAAAAAGAGAAACTTCAATGCTACGATCAAATAAAAGAA
GAATTTCAAATATTCTTCAAGGACCATTCAGAACTGGCTAATGAATGTGA
ACTACAGATTGCGAAAGGAGGGCAGAAAGCACATGTTAGTATATTGAGCA
GATCGCAAAGGTTTAAGCTATAACCTTTCAAATAAATATTTTTACATTTT
TAATGTTTACAAAACATCATAAAAGATATATGACTTTATTCTTCTTTTCA
GACATACAGTGATATCATAACATTTTTGGTTCCGATCAAATGTGACTGTT
CAGATGTACCACCAACATTCAAAAAGGTATCATAGTTAATATTGGTATTT
GAGATAATTGTTGCAAGCTTGATTTGAAGTGAAATCTTATTTACAGTTTT
GAGCTTTTTTTTCCAGCTAAGTAGTTGGTATTAGTTAATTTTAGTTAGAT
TTAGAACCATTATTGAAGAGGGCCTATTGAAAGAAGTCATTGCATTGATG
TCAAAAGAGGGATATGCATTGACTATAAACATCCAACTTTCTTTCAGCCA
AGATTTTTTATTCATTTTTTTTTAAATCACTTTTTTTTCATTGTAGGCAT
CTTCTCTCAAAAAATGCCAAAAATGATATCCCAAAGCCGACGTCCCCTTT
AATTCACATTTAGAATAAGCAGGGCGAAAAGTGGGCCATCTAAACCAGAG
CTGAGTCGCCAAGCTTGCATTGATCATTGTGATCAGAGTGATAGATGCTT
TCTCTTCTTTTTTAGAAGAATTCAGGGAAGGATGTATCATATCTTCACAT
AAAATACGAATCACCAAATCAAACATCAGTCTCCTCAAAATTGATTCTCA
ACAACTCGCTCATCAGGTAGCTGGAAAAGTAGTTTTTTATCTAACTATAA
TTTTCCTGTTGTTTTGGTTAGCTACGAAATAGATAAAGTTATTCTGGCTA
AGATCCTAAGCGTGAGAGGTACGTTTGCCATGTCTTATTGTCTAGATTGA
CTTTTCGAAATTTTCATCGGGAGCAATCAAGGTCGTAATATTCGATAAAA
AAAGGAAAAAGCCCACAAATCTTATAGCCACAAACGATAGGGTCTAACTG
CTCTAACTTAGGTTGGAAGGGTCAAGTTTTAACGCTGAGGATCCAAAAGC
TCAAAAATGGTCCAATACGGCTCAGAATATAGACTGGAAGTCTATAAACC
CCTTCCATATTGAAATATTCGAATAAATTTAACAAATAGCCTAAAAGCAA
CTTTCTCGTCCGAACTTTTAATTTCGAAAAACGAGAAAATTTTCGCCAAA
ATTCTCAATATATTTTGACGCAGATTGTGGGAGGTTAGATTTTATCACTT
GCCTTAGAAGAAAGTCTCCGCTGCTAAGGGGTAATATCAAGCAGTTATTG
GACAAAGTCGAATCCAATATTTTTCATATTGGATGAGACTGCGTCCAAAT
AAATGGTTTATTATCCGTTTATCGCTAAAACATTTCTCGTTTTCAAACAT
AATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAAATATGTAGCCTCCATGGAAGCTATATATTCGAAA
ATATTGGACAGAAAAGAAGCCAATCAAATGTCGCTATTTACGCGCGTCGG
ATAATAAGTGCAATTATCAATATTTTGTTCTTTTAGTGTGTTAGGTGGCA
GCTCAAATCTTCGGATTCCATCATATGGTTCTTTAAGTTTATCAAAGTAT
GTGGAGAAAGTGACTAAGCTTGTACAAAATACTGTTAGTATCTTTTATTT
TTATAATTAATAATGCACTTTAAGACTCTCGCTTATTCGAACTTCTATGA
TTCAAATCTCTCTATAATTCGAATATATTCCCCTTCCCCATCAAGGAAAA
ACTCTCTTAACATAATTTCAATAATTCGAATTTCTCTGTAATTCGAACAA
ATAAGATTCCCCGTTCGAGTTCGAATTAGCGGGAGTCTACTATAATAAAA
CGTAATACGTAATTGGGTAAGAAAAAGTCGAAAAAATCCTTCCATACCAA
TTCCCCTATCTTTAATTCCGTATTAAAAGGTATTTTGAATTATTACAAAG
TGTGACCAATTTCAAATGTTAAGAATTCCTACATTTTTCAAGAATTTATA
ATATTTATTTTTGATAAGCTCAGCTAGAATACTAAAATGCAGAAAATGAT
CTTTGTTGTGTCGTCTCTTCTTTGTTAGGTCGAAATGGTCAGTCAGGGAT
ATCAAATGCGAAGACATTTCATATCATTACTAATCAAAGAACTTGGAAGG
TTGGACAGAAAATTTTTTGAATTCTTTGATTCATGAAAGGGTCTGGGTTT
GAGTTTACAATAAGATCTAATGTCTCTAAAATTTTTAAGTCTGAAATCAA
TGCACTGCAGTCAATCTACCTTGGTAAACTTAGAACCAAATCTCTCGTGG
TGTTTTAATCTGATAATGCTGAAATAGCCGAAGTCTCTCCTAATCAAAGC
CTAATTCGTACTAAGGACTATATTATTACAAGTCTAATGGAAAATATGTT
TGTTCATTTTCTTAAGAAAACAGTTGCTTTGAGCCCACAAAGCTAAAATG
TTCTTAAGTTGTTGTTCTTAATATTTTGGCCATCGAAGTCTTATGTTCTT
ATATAGTTTGTTCTTATAAAAAAAAACTTCTATCTTACAAAACAGGAGAA
TTATTTCAGAAGGGATTAACTTGATTAAATTATTTCTTTTTGCTTTGATA
TGATAGCTCAGCAATAGTTGAATATGATACCAAATTGTTCCTTGAAGCAT
GTTTTATGGTGGAACGCGAGGATGGTTTTGCTTGTTTGCTTCTTGGTAAG
ATTCATCAATGTTATTTGTGAGTTTATTGTGAGTTTATTGTGAGAATCTC
TCCATGTCTGTTACTGCTGTGTCTTTTAACCCTTGGGCCGGATTTAGCTG
ACATGTTCTATACTTCATGATTAAAATTTTGATTTAAACGGGATAACACC
TCTCTAGAAAACTAGGAAAGGGAGGTATAAACGAAAGGAGGAATTGCTTC
TTTCTAGTCGGAAATGGATACTTTGCTTTTTTTGTACCAATTACTTTGCT
GGGTGTAATGAAGAGGAGATCGTTTAAGAAGAGGGAATCAGATGCCAGTC
TGCAGTTAGGCTGCACGCATCCAATTCCCGTACGAGAGTCACCCTAAATT
TGAGGTTACCTGTTTCAATTTATAGCGTGTTTTTATTGCCATAACACAAC
TTTGATAAGACTGATTTGACTCTCCTTCGTTTTTGGAGTGAAGATACACA
AAAAGCGTAAACGTTCAATCAGCCTGTTGGGGGTAACTCTCGGACGGGAA
TTTCATTCGCGATACGCATCCCCTCTATCAAGATAAGAGATGGGATTACA
AAAGGGTGATACCAATAGGCTTCTTCAGAAATAGTCCCCCGCTGTTGAGG
ATATCGGATATCCAGGGGATTAACGATTTTTGTTCTAAGATGGATATCCA
GGGGGTTGAGCATATTTTTAAGAGTGAATATCCAGGGGGTCTTTACTAAT
AAAGTAGGGGTTCGATACTTCGAAAAATCAATATCCTCAACAGCGGGGGT
AAAATCTTTTTCTGGAAAAGCCCAATGGAATGGTTTATGTTTCAGTTTCA
TTGACGCGTCTTTATTCTGAAAAATCTCCGAAGATGGTGCTACAATCCAT
TTACAATGTGGACGGTGCTTCAAAGTTACCGAAACTTCAAGTGCCCTTAG
AAGGATGTTTCCAAGATGTTGCTGGTGCTGGTGATGGTGTTGGAGAATGC
AATGAGAATGAAGACATCAGAGTGGCGTTCATACGGTAAGTCCGGTTAAT
GAGATGTAGCCAGACN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032103XLOC_032103Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050671-exon-scaffold_182-1575043694:145241..145297TCONS_00050671-exon-scaffold_182-1575043694:145241..145297Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1575043694:142542..142624TCONS_00050671-exon-scaffold_182-1575043694:142542..142624Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1575043694:142170..142261TCONS_00050671-exon-scaffold_182-1575043694:142170..142261Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1575043694:141764..141967TCONS_00050671-exon-scaffold_182-1575043694:141764..141967Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1575043694:141572..141646TCONS_00050671-exon-scaffold_182-1575043694:141572..141646Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1575043694:141032..141132TCONS_00050671-exon-scaffold_182-1575043694:141032..141132Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1575043694:139915..140011TCONS_00050671-exon-scaffold_182-1575043694:139915..140011Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1575043694:139399..139469TCONS_00050671-exon-scaffold_182-1575043694:139399..139469Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1575043694:138853..138941TCONS_00050671-exon-scaffold_182-1575043694:138853..138941Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1575043694:137832..138052TCONS_00050671-exon-scaffold_182-1575043694:137832..138052Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1510915933:145241..145297TCONS_00050671-exon-scaffold_182-1510915933:145241..145297Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1510915933:142542..142624TCONS_00050671-exon-scaffold_182-1510915933:142542..142624Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1510915933:142170..142261TCONS_00050671-exon-scaffold_182-1510915933:142170..142261Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1510915933:141764..141967TCONS_00050671-exon-scaffold_182-1510915933:141764..141967Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1510915933:141572..141646TCONS_00050671-exon-scaffold_182-1510915933:141572..141646Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1510915933:141032..141132TCONS_00050671-exon-scaffold_182-1510915933:141032..141132Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1510915933:139915..140011TCONS_00050671-exon-scaffold_182-1510915933:139915..140011Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1510915933:139399..139469TCONS_00050671-exon-scaffold_182-1510915933:139399..139469Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1510915933:138853..138941TCONS_00050671-exon-scaffold_182-1510915933:138853..138941Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1510915933:137832..138052TCONS_00050671-exon-scaffold_182-1510915933:137832..138052Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1491911889:145241..145297TCONS_00050671-exon-scaffold_182-1491911889:145241..145297Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1491911889:142542..142624TCONS_00050671-exon-scaffold_182-1491911889:142542..142624Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1491911889:142170..142261TCONS_00050671-exon-scaffold_182-1491911889:142170..142261Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1491911889:141764..141967TCONS_00050671-exon-scaffold_182-1491911889:141764..141967Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1491911889:141572..141646TCONS_00050671-exon-scaffold_182-1491911889:141572..141646Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1491911889:141032..141132TCONS_00050671-exon-scaffold_182-1491911889:141032..141132Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1491911889:139915..140011TCONS_00050671-exon-scaffold_182-1491911889:139915..140011Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1491911889:139399..139469TCONS_00050671-exon-scaffold_182-1491911889:139399..139469Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1491911889:138853..138941TCONS_00050671-exon-scaffold_182-1491911889:138853..138941Clytia hemisphaericaexon
TCONS_00050671-exon-scaffold_182-1491911889:137832..138052TCONS_00050671-exon-scaffold_182-1491911889:137832..138052Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_182supercontigscaffold_182:137832..145297 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.3871	18.2746	6.47532	6.5235	2.1138	0.657715	1.17032	2.50019	4.68651	5.17079	1.65294	4.15238	4.29984	2.46042	7.26536	6.4108	7.46669	6.563	3.28558	0.433799	4.2005	2.21643	8.82182	5.75326	4.62664	7.66717	2.51538	0.877546	4.93286	2.70469
Blast
[Close]
BLAST of TCONS_00050671 vs. Swiss-Prot (Human)
Match: BABA2 (BRISC and BRCA1-A complex member 2 OS=Homo sapiens GN=BABAM2 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.316e-27
Identity = 86/290 (29.66%), Postives = 143/290 (49.31%), Query Frame = 2 
Query:  101 FDVQIEVADSPCIWE--FNLEHADHFPDVIFAEEDEEFNPDITSYTSLSDWDIKKDTKLQEFVLELSRSYVQYQKEKLQCYDQIKEEFQIFFKDHSELANECELQIAKGGQKAHTYSDIITFLVPIKCDCSDVPPTFKK---KNSGKDVSYLHIKYESPNQTXXXXXXXXXXXXXXXXGGSSNLRIPSY-GSLSLSKYVEKVTKLVQNTVEMVSQGYQMRRHFISLLIKELGSSAIVEYDTKLFLEACFMVEREDGFACLLLVSLTRLYSEKSPKMVLQSIYNVDGASKL 952
            F + I  A     W+  FN ++ +  PD IF E D EF PD ++  +L+ W+      L   V EL + Y Q+Q  +L+   ++  E+Q   ++     N   ++I  G +   T      FL+ +  D S++P    K   ++ G+DV+ L + +E    T V  KL L+  +   LGGSS L IP++ G   L  YV +V  L+ N V+ V QGY  RR +I+  +   G + +VEYD + F +   ++  +D F  L+ + L   +    P +  QS+Y+   + +L
Sbjct:   56 FKLHIPYAGETLKWDIIFNAQYPELPPDFIFGE-DAEFLPDPSALQNLASWNPSNPECLLLVVKELVQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGEN---MEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFG-TGVVEYDAEGFTKLTLLLMWKD-FCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQL 339
The following BLAST results are available for this feature:
BLAST of TCONS_00050671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BABA21.316e-2729.66BRISC and BRCA1-A complex member 2 OS=Homo sapiens... [more]
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