TCONS_00050672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050672
Unique NameTCONS_00050672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050672 ID=TCONS_00050672|Name=TCONS_00050672|organism=Clytia hemisphaerica|type=transcript|length=1394bp
ATTCGCGCCAAATTTTGTGGAAAGAAGCATGGCTGGAGCAAACTCACACA
AGAACATGATGGATACTCAAAAGCATTTAGACCAGCAGATAAAGAAATTG
AGAGAATTTTCTTTAGGATTGAAAGGAGTCCAGGTTTTAATTGAAAAAAC
TAAATCCAGgTTCAATCCTTGGCAAAGTGATTCTGAgcaaatcaaaaata
tatttgatgtACAAATTGAAGTTGCTGACTCACCTTGCATTTGGGAATTC
AATCTAGAGCATGCAGATCATTTTCCAGATGTGATATTTGCTGAAGAAGA
CGAAGAGTTTAATCCGGATATTACCTCATACACTGTGCATTTTTAAGAAT
CAGTTATTTTTATGTTCCACAATTCCTCAAAAACTTTCGATGGTCCACAG
CAGTTTTTAACTTAAGTCAATCTCTTGACCAAACTTTCCTCAGAACAGAA
CTTCTTGTAAGCCTTTTTGATCATTAGAAATTGGATTCCCTTCTTCCACT
TTTGTAAAACAAACATTTTATCcttgaaaatttcagagcttGTCTGACTG
GGACATTAAGAAAGACACAAAATTGCAAGAGTTTGTTCTGGAACTTTCTC
GATCATATGTGCAATATCAAAAAGAGAAACTTCAATGCTACGATcaaata
aaagaagaatttcAAATATTCTTCAAGGACCATTCAGAACTGGCTAATGA
ATGTGAACTACAGATTGCGAAAGGAGGGCAGAAAGCACATACATACAGTG
ATATCATAACATTTTTGGTTCCGATCAAATGTGACTGTTCAGATGTACCA
CCAACATTCAAAAAGaAGAATTCAGGGAAGGATGTATCATATCTTCACAT
AAAATACGAATCACCAAATCAAACATCAGTCTCCTCAAAATTGATTCTCA
ACAACTCGCTCATCAGTGTGTTAGGTGGCAGCTCAAATCTTCGGATTCCA
TCATATGGTTCTTTAAGTTTATCAAAGTATGTGGAGAAAGTGACTAAGCT
TGTACAAAATACTGTCGAAATGGTCAGTCAGGGATATCAAATGCGAAGAC
ATTTCATATCATTACTAATCAAAGAACTTGGAAGCTCAGCAATAGTTGAA
TATGATACCAAATTGTTCCTTGAAGCATGTTTTATGGTGGAACGCGAGGA
TGGTTTTGCTTGTTTGCTTCTTGTTTCATTGACGCGTCTTTATTCTGAAA
AATCTCCGAAGATGGTGCTACAATCCATTTACAATGTGGACGGTGCTTCA
AAGTTACCGAAACTTCAAGTGCCCTTAGAAGGATGTTTCCAAGATGTTGC
TGGTGCTGGTGATGGTGTTGGAGAATGCAATGAGAATGAAGACATCAGAG
TGGCGTTCATACGGTAAGTCCGGTTAATGAGATGTAGCCAGACN
Run BLAST on NCBI

transcript from alignment at scaffold_182:137832..145973-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050672 ID=TCONS_00050672|Name=TCONS_00050672|organism=Clytia hemisphaerica|type=transcript|length=8142bp|location=Sequence derived from alignment at scaffold_182:137832..145973- (Clytia hemisphaerica)
ATTCGCGCCAAATTTTGTGGAAAGAAGCATGGCTGGAGCAAACTCACACA
AGAACATGATGGATACTCAAAAGCATTTAGACCAGCAGATAAAGAAATTG
AGAGAATTTTCTTTAGGATTGAAAGGAGTCCAGGTTTTAATTGAAAAAAC
TAAATCCAGGTACAGTAAATTAAATTTCATAGACGGTACTATATATAAAT
CTAGTAATCGATAATGTGCGAAGTAATCGAACAACCACTTATTGATTAAG
GATCCTCGACAAAAAATTTTAAAATTTTTTATCGGCATTAGGCCGATAAG
GGGGTGGGGGGGGGTCCAACTACATACCGATAAAAAAACAGGTAAAACCA
AACTATCAATTGGGCCTGCTGGCCTAAAGATTGACCCCCTTATTTCCCAG
CCATTTTCCCCGCCATTTTGTGTGACTTTGCCCTGGGTTTCCTCAAGTAA
CTCATATCGCACATTCTGATTGGTCGGAGAAAACAAAAGTGGTTTTCGCG
TGTGAATCGTGTGTCTTAAAAAAATTGGTGGAACTAGACTTGGTGTGACT
TGGTTTCAGATTATTTTGAGGCGCTGCTACTGGAACAGGGGGGGGGGTCT
TGCAGTTACTCCTTGACACTATGTGGAGTAACTGCAATTTTGGACATTTT
CTACAGACACCACCACCCTTGCAGTNAGAATTTTCTTTAGGATTGAAAGG
AGTCCAGGTTTTAATTGAAAAAACTAAATCCAGGTACAGTAAATTAAATT
TCATAGACGGTACTATAAATCTAGTAATCGATAATGCCAGACGGTGTCAA
TCGAACAACTTCGAACAAAAATCGCAATCGAACCAATCGAACGTAATCGA
ACGCGATCGAATAATTGCGATTCGATTGTCGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNATACCGATAAAAAAACAGGTAAAACCAAACTATCAATTGGG
CCTGCTGGCCTAAAGATTGACCCCCTTATTTCCCAGCCATTTTCCCCGCC
ATTTTGTGTGACTTTGCCCTGGGTTTCCTCAAGTAACTCATATCGCACAT
TCTGATTGGTCAGAGAAAATAAAAGTGGTTTTCGCGCGTGAATCGTGTGC
CTTAAAAAAATTGGTGGAACTAGACTTGGTGTGACTTGGTTTCAGATTAT
TTTGAGGCGCTGCTACTGGAAACTGGAAACATATTTGATAAAATCGGAGG
CTGGAAAGTACTCAATATAATCAAAGGTATTCAATATGATCGAAGGTAAT
CTCATGCAGCAAGTTACATGACTGGTTATTTGCAAGTCCCATGGGGCGAT
AGGCGGTAAGGAGGTGGGCGTTCTCTGATTCTCAAATTGGTGCCAGTCAT
TTTGAATGAAAACAAAAAAGTTAAAAAGGGCACGCTATCAGTGAAAGTTA
TCGTGACGTGCTATGGCAGAAAGTATGATTGATAAACTCGGTGGAGTTAT
CAAAACAAATTTGTTGTCAAAGAGATTTAACAATACAGGCCAGATATCAA
CAGTCTCATGTTTCGACCAATTGTCCCAAGTTAGCTCAGTTGAAGGTAGC
CCACTACTCTAGAGCTTTATAGCAGAGCATAGGTTGCTGGGCGACCGCCT
CAATAGGCCATTGGAAAATCAGATAAGAGCAAGCGGGTAAGTACCGCACG
AGACGAGAGTGATTAATGCAAGCAATTGCAATTGAATCAATCAAACGTAT
AATATAATGAATACAATTGAATGTAAAAAAACACTCAAATTTTTATCAGC
ATTGGGCCGATAAGCTTCAAACCCTCTACCCCTATCGAGTTGATCTCACC
TTTGCACCCGTTATCATTGATCTTGCCTTTGCACCCGTTATTGTTGATCT
CGCCTTTGCACCCATTATCGTTGAGTTTTTGTCTATTTGCACCAACATTG
AGTTTGTTCATACAACGCATTGATATTGTCAATCAAAACGAAAGTTAAAA
AGGTGCAATGAAGTTGCAACATTTTGAAAGAAAAGGCAGCGCCCTGGCCA
ATGAAAAAGTAGGTTTTTTTAAGCTAATTAAGCTAATTCAAAGCTGTACT
TTTAAAGTTGCAAATTTGCGTGCGAAGGTGAAAGCAAGTGAAATTGCATG
CTTTTAGTGGAGTTTTTGGACGAAATGAGGAAGAAATTGGCAGAAAAGAT
TTTCTTCCTAATACTTGTTTTTTTATTGGTATGTAGTTGGACTCAGTCTC
GGCCTTATCAGCCCAATGCCAATAAAAAATTTGAAAGTTTTTTGTCAAGG
GCCCCTAATCGGAGCAATCAAACGGCAAATCCAGGGTAATATTGCTTTCG
ATTGAGTTCATTTGGCGTGCGATTCCCTCGATTGACATCGTCTGGCTATA
TAGAACCCCCTCTGAACCCCCACCAGAGACCAACAGTTTCATTAATGCAC
AGCTTTGCTGAGCAAATATCCTCATTAGAAACTCAATCTAAATTTACAAA
AGAAGCCATAGCTCAAAGTTCTTAGAAAAATAACTACCCACTAGAAGTAG
ATGAGATTCAATCTGATCCAAAGGAAGACCTCCCAAATCGTATGCCACCT
GTAAAGGAAAATATTAATGTTTTTCTATAGACTTTTTGTAGGAGGTGATG
TCATGTCGTTTTATGCAAGTTTTACTTGTTGCATAATTTAGTTTGTCGAC
TTTTATATTATTTTTTTCATTTTAAAGACATTATTTAAAATTTTTGTAGG
TTCAATCCTTGGCAAAGTGATTCTGAGCAAATCAAAAATATATTTGATGT
ACAAATTGAAGTTGCTGACTCACCTTGCATTTGTATGTTTTAATTTTGAG
GTTCAGATTTATAATTGTTTTCTCAATTGTACTATAATTGTACTAAACTA
AANTATGTTTTCAGATTTATAATTGTTTTCTTAATTGTACTATAATTGTA
CTAAACTAAAATGAAACCTTTGTTTTTGATTTCAGTCAAATCCGCCAAAT
CCGCCAAATTTTCTTTCTGCCAAAATTTCTTCCTTTAAGGTAGATGATAT
TTAATTAGAAGTTGTTTTTGTGGAATATTTTAACTAATTTTAAAACACGT
TTCTTTTTTCAGGGGAATTCAATCTAGAGCATGCAGATCATTTTCCAGAT
GTGATATTTGCTGAAGAAGACGAAGAGTTTAATCCGGATATTACCTCATA
CACTGTGCATTTTTAAGAATCAGTTATTTTTATGTTCCACAATTCCTCAA
AAACTTTCGATGGTCCACAGCAGTTTTTAACTTAAGTCAATCTCTTGACC
AAACTTTCCTCAGAACAGAACTTCTTGTAAGCCTTTTTGATCATTAGAAA
TTGGATTCCCTTCTTCCACTTTTGTAAAACAAACATTTTATCCTTGAAAA
TTTCAGAGCTTGTCTGACTGGGACATTAAGAAAGACACAAAATTGCAAGA
GTTTGTTCTGGAACTTTCTCGATCATATGTGCAATATCAAAAAGAGAAAC
TTCAATGCTACGATCAAATAAAAGAAGAATTTCAAATATTCTTCAAGGAC
CATTCAGAACTGGCTAATGAATGTGAACTACAGATTGCGAAAGGAGGGCA
GAAAGCACATGTTAGTATATTGAGCAGATCGCAAAGGTTTAAGCTATAAC
CTTTCAAATAAATATTTTTACATTTTTAATGTTTACAAAACATCATAAAA
GATATATGACTTTATTCTTCTTTTCAGACATACAGTGATATCATAACATT
TTTGGTTCCGATCAAATGTGACTGTTCAGATGTACCACCAACATTCAAAA
AGGTATCATAGTTAATATTGGTATTTGAGATAATTGTTGCAAGCTTGATT
TGAAGTGAAATCTTATTTACAGTTTTGAGCTTTTTTTTCCAGCTAAGTAG
TTGGTATTAGTTAATTTTAGTTAGATTTAGAACCATTATTGAAGAGGGCC
TATTGAAAGAAGTCATTGCATTGATGTCAAAAGAGGGATATGCATTGACT
ATAAACATCCAACTTTCTTTCAGCCAAGATTTTTTATTCATTTTTTTTTA
AATCACTTTTTTTTCATTGTAGGCATCTTCTCTCAAAAAATGCCAAAAAT
GATATCCCAAAGCCGACGTCCCCTTTAATTCACATTTAGAATAAGCAGGG
CGAAAAGTGGGCCATCTAAACCAGAGCTGAGTCGCCAAGCTTGCATTGAT
CATTGTGATCAGAGTGATAGATGCTTTCTCTTCTTTTTTAGAAGAATTCA
GGGAAGGATGTATCATATCTTCACATAAAATACGAATCACCAAATCAAAC
ATCAGTCTCCTCAAAATTGATTCTCAACAACTCGCTCATCAGGTAGCTGG
AAAAGTAGTTTTTTATCTAACTATAATTTTCCTGTTGTTTTGGTTAGCTA
CGAAATAGATAAAGTTATTCTGGCTAAGATCCTAAGCGTGAGAGGTACGT
TTGCCATGTCTTATTGTCTAGATTGACTTTTCGAAATTTTCATCGGGAGC
AATCAAGGTCGTAATATTCGATAAAAAAAGGAAAAAGCCCACAAATCTTA
TAGCCACAAACGATAGGGTCTAACTGCTCTAACTTAGGTTGGAAGGGTCA
AGTTTTAACGCTGAGGATCCAAAAGCTCAAAAATGGTCCAATACGGCTCA
GAATATAGACTGGAAGTCTATAAACCCCTTCCATATTGAAATATTCGAAT
AAATTTAACAAATAGCCTAAAAGCAACTTTCTCGTCCGAACTTTTAATTT
CGAAAAACGAGAAAATTTTCGCCAAAATTCTCAATATATTTTGACGCAGA
TTGTGGGAGGTTAGATTTTATCACTTGCCTTAGAAGAAAGTCTCCGCTGC
TAAGGGGTAATATCAAGCAGTTATTGGACAAAGTCGAATCCAATATTTTT
CATATTGGATGAGACTGCGTCCAAATAAATGGTTTATTATCCGTTTATCG
CTAAAACATTTCTCGTTTTCAAACATAATTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATATGTAG
CCTCCATGGAAGCTATATATTCGAAAATATTGGACAGAAAAGAAGCCAAT
CAAATGTCGCTATTTACGCGCGTCGGATAATAAGTGCAATTATCAATATT
TTGTTCTTTTAGTGTGTTAGGTGGCAGCTCAAATCTTCGGATTCCATCAT
ATGGTTCTTTAAGTTTATCAAAGTATGTGGAGAAAGTGACTAAGCTTGTA
CAAAATACTGTTAGTATCTTTTATTTTTATAATTAATAATGCACTTTAAG
ACTCTCGCTTATTCGAACTTCTATGATTCAAATCTCTCTATAATTCGAAT
ATATTCCCCTTCCCCATCAAGGAAAAACTCTCTTAACATAATTTCAATAA
TTCGAATTTCTCTGTAATTCGAACAAATAAGATTCCCCGTTCGAGTTCGA
ATTAGCGGGAGTCTACTATAATAAAACGTAATACGTAATTGGGTAAGAAA
AAGTCGAAAAAATCCTTCCATACCAATTCCCCTATCTTTAATTCCGTATT
AAAAGGTATTTTGAATTATTACAAAGTGTGACCAATTTCAAATGTTAAGA
ATTCCTACATTTTTCAAGAATTTATAATATTTATTTTTGATAAGCTCAGC
TAGAATACTAAAATGCAGAAAATGATCTTTGTTGTGTCGTCTCTTCTTTG
TTAGGTCGAAATGGTCAGTCAGGGATATCAAATGCGAAGACATTTCATAT
CATTACTAATCAAAGAACTTGGAAGGTTGGACAGAAAATTTTTTGAATTC
TTTGATTCATGAAAGGGTCTGGGTTTGAGTTTACAATAAGATCTAATGTC
TCTAAAATTTTTAAGTCTGAAATCAATGCACTGCAGTCAATCTACCTTGG
TAAACTTAGAACCAAATCTCTCGTGGTGTTTTAATCTGATAATGCTGAAA
TAGCCGAAGTCTCTCCTAATCAAAGCCTAATTCGTACTAAGGACTATATT
ATTACAAGTCTAATGGAAAATATGTTTGTTCATTTTCTTAAGAAAACAGT
TGCTTTGAGCCCACAAAGCTAAAATGTTCTTAAGTTGTTGTTCTTAATAT
TTTGGCCATCGAAGTCTTATGTTCTTATATAGTTTGTTCTTATAAAAAAA
AACTTCTATCTTACAAAACAGGAGAATTATTTCAGAAGGGATTAACTTGA
TTAAATTATTTCTTTTTGCTTTGATATGATAGCTCAGCAATAGTTGAATA
TGATACCAAATTGTTCCTTGAAGCATGTTTTATGGTGGAACGCGAGGATG
GTTTTGCTTGTTTGCTTCTTGGTAAGATTCATCAATGTTATTTGTGAGTT
TATTGTGAGTTTATTGTGAGAATCTCTCCATGTCTGTTACTGCTGTGTCT
TTTAACCCTTGGGCCGGATTTAGCTGACATGTTCTATACTTCATGATTAA
AATTTTGATTTAAACGGGATAACACCTCTCTAGAAAACTAGGAAAGGGAG
GTATAAACGAAAGGAGGAATTGCTTCTTTCTAGTCGGAAATGGATACTTT
GCTTTTTTTGTACCAATTACTTTGCTGGGTGTAATGAAGAGGAGATCGTT
TAAGAAGAGGGAATCAGATGCCAGTCTGCAGTTAGGCTGCACGCATCCAA
TTCCCGTACGAGAGTCACCCTAAATTTGAGGTTACCTGTTTCAATTTATA
GCGTGTTTTTATTGCCATAACACAACTTTGATAAGACTGATTTGACTCTC
CTTCGTTTTTGGAGTGAAGATACACAAAAAGCGTAAACGTTCAATCAGCC
TGTTGGGGGTAACTCTCGGACGGGAATTTCATTCGCGATACGCATCCCCT
CTATCAAGATAAGAGATGGGATTACAAAAGGGTGATACCAATAGGCTTCT
TCAGAAATAGTCCCCCGCTGTTGAGGATATCGGATATCCAGGGGATTAAC
GATTTTTGTTCTAAGATGGATATCCAGGGGGTTGAGCATATTTTTAAGAG
TGAATATCCAGGGGGTCTTTACTAATAAAGTAGGGGTTCGATACTTCGAA
AAATCAATATCCTCAACAGCGGGGGTAAAATCTTTTTCTGGAAAAGCCCA
ATGGAATGGTTTATGTTTCAGTTTCATTGACGCGTCTTTATTCTGAAAAA
TCTCCGAAGATGGTGCTACAATCCATTTACAATGTGGACGGTGCTTCAAA
GTTACCGAAACTTCAAGTGCCCTTAGAAGGATGTTTCCAAGATGTTGCTG
GTGCTGGTGATGGTGTTGGAGAATGCAATGAGAATGAAGACATCAGAGTG
GCGTTCATACGGTAAGTCCGGTTAATGAGATGTAGCCAGACN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032103XLOC_032103Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050672-exon-scaffold_182-1575043694:145815..145973TCONS_00050672-exon-scaffold_182-1575043694:145815..145973Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1575043694:142542..142624TCONS_00050672-exon-scaffold_182-1575043694:142542..142624Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1575043694:141764..142261TCONS_00050672-exon-scaffold_182-1575043694:141764..142261Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1575043694:141572..141646TCONS_00050672-exon-scaffold_182-1575043694:141572..141646Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1575043694:141032..141132TCONS_00050672-exon-scaffold_182-1575043694:141032..141132Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1575043694:139915..140011TCONS_00050672-exon-scaffold_182-1575043694:139915..140011Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1575043694:139399..139469TCONS_00050672-exon-scaffold_182-1575043694:139399..139469Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1575043694:138853..138941TCONS_00050672-exon-scaffold_182-1575043694:138853..138941Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1575043694:137832..138052TCONS_00050672-exon-scaffold_182-1575043694:137832..138052Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1510915933:145815..145973TCONS_00050672-exon-scaffold_182-1510915933:145815..145973Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1510915933:142542..142624TCONS_00050672-exon-scaffold_182-1510915933:142542..142624Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1510915933:141764..142261TCONS_00050672-exon-scaffold_182-1510915933:141764..142261Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1510915933:141572..141646TCONS_00050672-exon-scaffold_182-1510915933:141572..141646Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1510915933:141032..141132TCONS_00050672-exon-scaffold_182-1510915933:141032..141132Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1510915933:139915..140011TCONS_00050672-exon-scaffold_182-1510915933:139915..140011Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1510915933:139399..139469TCONS_00050672-exon-scaffold_182-1510915933:139399..139469Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1510915933:138853..138941TCONS_00050672-exon-scaffold_182-1510915933:138853..138941Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1510915933:137832..138052TCONS_00050672-exon-scaffold_182-1510915933:137832..138052Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1491911889:145815..145973TCONS_00050672-exon-scaffold_182-1491911889:145815..145973Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1491911889:142542..142624TCONS_00050672-exon-scaffold_182-1491911889:142542..142624Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1491911889:141764..142261TCONS_00050672-exon-scaffold_182-1491911889:141764..142261Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1491911889:141572..141646TCONS_00050672-exon-scaffold_182-1491911889:141572..141646Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1491911889:141032..141132TCONS_00050672-exon-scaffold_182-1491911889:141032..141132Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1491911889:139915..140011TCONS_00050672-exon-scaffold_182-1491911889:139915..140011Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1491911889:139399..139469TCONS_00050672-exon-scaffold_182-1491911889:139399..139469Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1491911889:138853..138941TCONS_00050672-exon-scaffold_182-1491911889:138853..138941Clytia hemisphaericaexon
TCONS_00050672-exon-scaffold_182-1491911889:137832..138052TCONS_00050672-exon-scaffold_182-1491911889:137832..138052Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_182supercontigscaffold_182:137832..145973 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.50081	4.98732	1.62414	0.835187	0	0.346669	1.49083	1.26239	1.81268	1.33493	2.80138	2.43973	2.96888	2.12731	5.09159	3.41054	4.79908	4.72922	2.12402	2.50648	4.3547	3.25736	2.55606	3.41727	1.88416	3.22223	1.91492	2.16166	2.50265	2.09086
Blast
[Close]
BLAST of TCONS_00050672 vs. Swiss-Prot (Human)
Match: BABA2 (BRISC and BRCA1-A complex member 2 OS=Homo sapiens GN=BABAM2 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.174e-20
Identity = 72/249 (28.92%), Postives = 122/249 (49.00%), Query Frame = 3 
Query:  522 P*KFQSLSDWDIKKDTKLQEFVLELSRSYVQYQKEKLQCYDQIKEEFQIFFKDHSELANECELQIAKGGQKAHTYSDIITFLVPIKCDCSDVPPTFKK---KNSGKDVSYLHIKYESPNQTXXXXXXXXXXXXXXXXGGSSNLRIPSY-GSLSLSKYVEKVTKLVQNTVEMVSQGYQMRRHFISLLIKELGSSAIVEYDTKLFLEACFMVEREDGFACLLLVSLTRLYSEKSPKMVLQSIYNVDGASKL 1256
            P   Q+L+ W+      L   V EL + Y Q+Q  +L+   ++  E+Q   ++     N   ++I  G +   T      FL+ +  D S++P    K   ++ G+DV+ L + +E    T V  KL L+  +   LGGSS L IP++ G   L  YV +V  L+ N V+ V QGY  RR +I+  +   G + +VEYD + F +   ++  +D F  L+ + L   +    P +  QS+Y+   + +L
Sbjct:   96 PSALQNLASWNPSNPECLLLVVKELVQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGEN---MEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFG-TGVVEYDAEGFTKLTLLLMWKD-FCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQL 339
The following BLAST results are available for this feature:
BLAST of TCONS_00050672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BABA21.174e-2028.92BRISC and BRCA1-A complex member 2 OS=Homo sapiens... [more]
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