TCONS_00050674 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050674
Unique NameTCONS_00050674
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050674 ID=TCONS_00050674|Name=TCONS_00050674|organism=Clytia hemisphaerica|type=transcript|length=622bp
agcaagcgtctgtctttccttggacacaggaacgcgggaatagtgcttat
aataataaagagttcttataaaaaatagaaattgccgcgNTGGTAGACCA
CCTAAGGAATCAGTGTTTGGAAGCATCCCAGAAGCCATCTGGTACACAGT
GGTCACAACTACAACTCTTGGCTATGGAGATGTAGTACCGGAGACGATCC
AAGGGAAATTGATTGGTTCATTGTGTTGTCTAATGGGTGTCATTGTCATT
GCCCTCCCTGTCCCCATCATTCAAATGAAGTCACAGACTCTAGTATCTGG
AGATATTTGACCAGGACGAACTCAACTCAAAATCGAAAACATTGCAAGTG
AAAATTGCACGGAACTTTCATGGCCTCAGTTGAGAAAACAGAATCAAAAA
TGAACACGAAGAGTGGGATTGTTATAAGTTTATTGCAAGATGATTATTTT
AAACGCCATAacaaatattgtatttttataaataatgaatggatttttcg
tttttttaaatTACGTTTAATCTAATATAAAATGTCTATACAAATATTTA
TTGCTGTAAAATGACCAAGGCTTAATTGGGCAATGTGCCACAGGTCCCTG
GCGTATTTCCTCAAATAAGCGC
Run BLAST on NCBI

transcript from alignment at scaffold_182:163107..164972-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050674 ID=TCONS_00050674|Name=TCONS_00050674|organism=Clytia hemisphaerica|type=transcript|length=1866bp|location=Sequence derived from alignment at scaffold_182:163107..164972- (Clytia hemisphaerica)
AGCAAGCGTCTGTCTTTCCTTGGACACAGGAACGCGGGAATAGTGCTTAT
AATAATAAAGAGTTCTTATAAAAAATAGAAATTGCCGCGNTGGTAGACCA
CCTAAGGAATCAGTGTTTGGAAGCATCCCAGAAGCCATCTGGTACACAGT
GGTCACAACTACAACTCTTGGGTAAGACCTTCCTAACTTGACACACACAA
CGTTGTTTGAACGTTCATCTAACGTTACATGGATGTTGTGAGCTTTAGAA
AGACGTTGTTTTGATTTTGTGTGTCTGAACATCCTACCTTCTTCGTTTCT
ATTGCCTAATTCAAGACTTAAGTTTTAGAAATGAGTTGGGGAATACCTTT
TTGCCGAAGTACCTGTTGAGTAGATCATGGTCTGCATTATCAAATTTCTC
CACAAAAAATTGAGAAACCATTCTTGCAATCATTTCCGATATTTTATGAA
CCTACAGCCTGCCTCGCAACATAAATTACTCTTATTACTAACCGACCGAC
CCCTATTCGCCATAGTTTTTCCATATATATCTATACATTTCGATAAAAAG
GGACGTATTGAGAAGGAGCATATTCTTTTTGTACATTTTAAAGCAAAAAT
GGTCAGATTTTCATCCAAAATTTTGCCTAAAAAGCTTCCTTATTCTCACT
TTTTACGCCCTTACACTTTTTCTATCATTTCGATCCTTACAGTTGTAGAC
TAGCAAGCGTCTGTCTCTTCCTTGGACACAGGAACGCGGGAATAGTGCTT
ATAATAATAAAGAGTTCTTATAAAAAATAGAAATTGCCGCGGGAGAGTGT
TTTGGTTGTATTCAGTGAACATATATAGAAATAGATCCTATTGCAAGTTT
AATCTGCAGCGAAATACAACGACGTGGTTTACTAGTCTATACAGTTGCGC
TCCAGGAAGCCTGAAAAACGTATCCTCAAGATGCATAACCTTGAGTGCCT
TCCCCAGGTCAATGACAACGTAGGAAAAACCTTCTCCTCTTTCTTCTTTA
GCTATGGAGATGTAGTACCGGAGACGATCCAAGGGAAATTGATTGGTTCA
TTGTGTTGTCTAATGGGTGTCATTGTCATTGCCCTCCCTGTCCCCATCAT
TCAAATGAAGGTAGGGGAATTTAAGGGATTTATTCATTANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAAAGGGTCCCAAAATCACCAAAATTTTGTCTCTCAA
AGGGTCGATTTTCGATTTTCGGCTCGGACATACCCGTCACCTCGCAAACC
TAGTACCCCCCCTCCCGGGGTAAAAAGTCAACTGTTGTTAGGGTCGAATT
TGAGAACACTTTTTTAATCATATTGACAAAGTTTTAACAAGATTTTTAAG
TTGTAATATACCGGCATCGTATGCCGGTACCCCTTTTGCCCAAGTACCTC
CTCCCTCCGCCAATGTATGTGATATTAATGTATAGTCAGGTATTTTATTG
TTGTTTTTTCTCTCACACATTTAGTCACAGACTCTAGTATCTGGAGATAT
TTGACCAGGACGAACTCAACTCAAAATCGAAAACATTGCAAGTGAAAATT
GCACGGAACTTTCATGGCCTCAGTTGAGAAAACAGAATCAAAAATGAACA
CGAAGAGTGGGATTGTTATAAGTTTATTGCAAGATGATTATTTTAAACGC
CATAACAAATATTGTATTTTTATAAATAATGAATGGATTTTTCGTTTTTT
TAAATTACGTTTAATCTAATATAAAATGTCTATACAAATATTTATTGCTG
TAAAATGACCAAGGCTTAATTGGGCAATGTGCCACAGGTCCCTGGCGTAT
TTCCTCAAATAAGCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032104XLOC_032104Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050674-exon-scaffold_182-1575043694:164802..164972TCONS_00050674-exon-scaffold_182-1575043694:164802..164972Clytia hemisphaericaexon
TCONS_00050674-exon-scaffold_182-1575043694:163863..163971TCONS_00050674-exon-scaffold_182-1575043694:163863..163971Clytia hemisphaericaexon
TCONS_00050674-exon-scaffold_182-1575043694:163107..163448TCONS_00050674-exon-scaffold_182-1575043694:163107..163448Clytia hemisphaericaexon
TCONS_00050674-exon-scaffold_182-1510915933:164802..164972TCONS_00050674-exon-scaffold_182-1510915933:164802..164972Clytia hemisphaericaexon
TCONS_00050674-exon-scaffold_182-1510915933:163863..163971TCONS_00050674-exon-scaffold_182-1510915933:163863..163971Clytia hemisphaericaexon
TCONS_00050674-exon-scaffold_182-1510915933:163107..163448TCONS_00050674-exon-scaffold_182-1510915933:163107..163448Clytia hemisphaericaexon
TCONS_00050674-exon-scaffold_182-1491911889:164802..164972TCONS_00050674-exon-scaffold_182-1491911889:164802..164972Clytia hemisphaericaexon
TCONS_00050674-exon-scaffold_182-1491911889:163863..163971TCONS_00050674-exon-scaffold_182-1491911889:163863..163971Clytia hemisphaericaexon
TCONS_00050674-exon-scaffold_182-1491911889:163107..163448TCONS_00050674-exon-scaffold_182-1491911889:163107..163448Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_182supercontigscaffold_182:163107..164972 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.124158	0.310593	0.0665366	0.500846	0	0.243876	0.150833	0.0655459	0	0.44951	0.121486	0	0.133892	0	0.185488	0.989888	0.341185	0.182472	0.410952	0.140832	0	0	0	0.946685	0.598743	0	0	0	0.160668
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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