TCONS_00050676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050676
Unique NameTCONS_00050676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1585

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050676 ID=TCONS_00050676|Name=TCONS_00050676|organism=Clytia hemisphaerica|type=transcript|length=1585bp
ACGGGTTTCAAAGTATCTTTATCAACAAGATAGAACTCATACTCAAAGGA
GCTGAAGAATCGATAACCCAGTGCCTCCATCTTACGTAATTGCTTTTTAC
ACTGCTGTCGACATGATGTTTGAAAGTATTCAATGTGATCAATATCAAGA
TCACAAAAAATACTTGCCGTATTTTGAAGCCATGGTAATGATTTGAAAGT
TTCAAGTTCGGGTGCGAGTTTGGCGTTTGGATTGTTGATTTCAAATGTTA
ATCCAGTACCGTCGACACCTTTCCCATCAGGAAGCATCAGCATGGATGGA
GATCCCATATGAAAATTACTTGGCAAGCCGTAGATGAAAGATTCTGAATT
CATAAAGAGACATTTGATCGTTCCACATAGATCAATGGCTTCTAATTGCA
cgaattcgatttttttttcttttatctNATCCTCCTTTAAGTATTCTATT
GCTTTTTCCAAGCTTTCAGGAACCTTTTCAGCTCCTAGTGGTAACCCAGC
AGCCTCCAGTATGTTTCCAAAGAAGGCTTCTGATTTGAGAGGAAGCTTCC
GATTGATACCGTCCATTCCCGCAATTAAGCATCCAGTAGTGACTAAGTAC
GGATTACACCCTGCTCCGGGCAGCCGGTCTTCGATGTAGGTGCATGAGGG
GCTGTAATTCTTTATACGGAAACGTACACCGCGGTGATCGTAGCCCCACG
TGTTGTTCGAAGGAACGAAATAGCTGTCTTGGCTATCTTTAGCCAGACAC
TTCTCAACACAATTATTGGTGGCCCAATATAAAGCTGGCAGTGCTTTTGA
ATGGTGTTGCAGTCCAGCAATCCAATATTTACAGATATCTGATAACTTAT
CATCTTTGTTGATCTGGGAAAAAGCGTTTTCTTTTTTGCTTAATTGCCAG
ATGGAGTGATTGAAATGACTGGAGCAATGTGAATGGTCTTCAAATGGCTG
CGTCATAAACAAGGCTTTCATATGATGTTTCTGTGCAGAACTTTTAACAG
CTTTCTTAAATAACATTGCGTTATCGGAAGCTTGTATTCCAAACGTTGGC
TTCATAGTTAATTCTTGTTGGGCAGGGCCATCCTCAGATGTGAAGGCCTC
AACTTGAATCCCAGTTTTCTGTAGATACGACATGACATCTTGGATGAAGG
GTCGTATACGATCAATATGTTCTTCGGAGTACCAGTTACTCTCTTCATAA
ACGGGTTTCAAAGTATCTTTATCAACAAGATAGAACTCATACTCAAAGGA
GCTGAAGAATCGATAACCCAGTGCCTCCATCTTACGTAATTGCTTTTTAC
ACTGCTGTCGACATGATGTTTGAAAGTATTCAATGTGATCAATATCAAGA
TCACAAAAAATACTTGCCGTATTTTGAAGCCATGGTAATGATTTGAAAGT
TTCAAGTTCGGGTGCGAGTTTGGCGTTTGGATTGTTGATTTCAAATGTTA
ATCCAGTACCGTCGACACCTTTCCCATCAGGAAGCATCAGCATGGATGGA
GATCCCATATGAAAATTACTTGGCAAGCCGTAGATGAAAGATTCTGAATT
CATAAAGAGACATTTGATCGTTCCACATAGATCAA
Run BLAST on NCBI

protein sequence of TCONS_00050676-protein

>TCONS_00050676-protein ID=TCONS_00050676-protein|Name=TCONS_00050676-protein|organism=Clytia hemisphaerica|type=polypeptide|length=527bp
DLCGTIKCLFMNSESFIYGLPSNFHMGSPSMLMLPDGKGVDGTGLTFEIN
NPNAKLAPELETFKSLPWLQNTASIFCDLDIDHIEYFQTSCRQQCKKQLR
KMEALGYRFFSSFEYEFYLVDKDTLKPVYEESNWYSEEHIDRIRPFIQDV
MSYLQKTGIQVEAFTSEDGPAQQELTMKPTFGIQASDNAMLFKKAVKSSA
QKHHMKALFMTQPFEDHSHCSSHFNHSIWQLSKKENAFSQINKDDKLSDI
CKYWIAGLQHHSKALPALYWATNNCVEKCLAKDSQDSYFVPSNNTWGYDH
RGVRFRIKNYSPSCTYIEDRLPGAGCNPYLVTTGCLIAGMDGINRKLPLK
SEAFFGNILEAAGLPLGAEKVPESLEKAIEYLKEDXIKEKKIEFVQLEAI
DLCGTIKCLFMNSESFIYGLPSNFHMGSPSMLMLPDGKGVDGTGLTFEIN
NPNAKLAPELETFKSLPWLQNTASIFCDLDIDHIEYFQTSCRQQCKKQLR
KMEALGYRFFSSFEYEFYLVDKDTLKP
Run BLAST on NCBI

transcript from alignment at scaffold_182:16196..17780

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050676 ID=TCONS_00050676|Name=TCONS_00050676|organism=Clytia hemisphaerica|type=transcript|length=1585bp|location=Sequence derived from alignment at scaffold_182:16196..17780 (Clytia hemisphaerica)
TTGATCTATGTGGAACGATCAAATGTCTCTTTATGAATTCAGAATCTTTC
ATCTACGGCTTGCCAAGTAATTTTCATATGGGATCTCCATCCATGCTGAT
GCTTCCTGATGGGAAAGGTGTCGACGGTACTGGATTAACATTTGAAATCA
ACAATCCAAACGCCAAACTCGCACCCGAACTTGAAACTTTCAAATCATTA
CCATGGCTTCAAAATACGGCAAGTATTTTTTGTGATCTTGATATTGATCA
CATTGAATACTTTCAAACATCATGTCGACAGCAGTGTAAAAAGCAATTAC
GTAAGATGGAGGCACTGGGTTATCGATTCTTCAGCTCCTTTGAGTATGAG
TTCTATCTTGTTGATAAAGATACTTTGAAACCCGTTTATGAAGAGAGTAA
CTGGTACTCCGAAGAACATATTGATCGTATACGACCCTTCATCCAAGATG
TCATGTCGTATCTACAGAAAACTGGGATTCAAGTTGAGGCCTTCACATCT
GAGGATGGCCCTGCCCAACAAGAATTAACTATGAAGCCAACGTTTGGAAT
ACAAGCTTCCGATAACGCAATGTTATTTAAGAAAGCTGTTAAAAGTTCTG
CACAGAAACATCATATGAAAGCCTTGTTTATGACGCAGCCATTTGAAGAC
CATTCACATTGCTCCAGTCATTTCAATCACTCCATCTGGCAATTAAGCAA
AAAAGAAAACGCTTTTTCCCAGATCAACAAAGATGATAAGTTATCAGATA
TCTGTAAATATTGGATTGCTGGACTGCAACACCATTCAAAAGCACTGCCA
GCTTTATATTGGGCCACCAATAATTGTGTTGAGAAGTGTCTGGCTAAAGA
TAGCCAAGACAGCTATTTCGTTCCTTCGAACAACACGTGGGGCTACGATC
ACCGCGGTGTACGTTTCCGTATAAAGAATTACAGCCCCTCATGCACCTAC
ATCGAAGACCGGCTGCCCGGAGCAGGGTGTAATCCGTACTTAGTCACTAC
TGGATGCTTAATTGCGGGAATGGACGGTATCAATCGGAAGCTTCCTCTCA
AATCAGAAGCCTTCTTTGGAAACATACTGGAGGCTGCTGGGTTACCACTA
GGAGCTGAAAAGGTTCCTGAAAGCTTGGAAAAAGCAATAGAATACTTAAA
GGAGGATNagataaaagaaaaaaaaatcgaattcgTGCAATTAGAAGCCA
TTGATCTATGTGGAACGATCAAATGTCTCTTTATGAATTCAGAATCTTTC
ATCTACGGCTTGCCAAGTAATTTTCATATGGGATCTCCATCCATGCTGAT
GCTTCCTGATGGGAAAGGTGTCGACGGTACTGGATTAACATTTGAAATCA
ACAATCCAAACGCCAAACTCGCACCCGAACTTGAAACTTTCAAATCATTA
CCATGGCTTCAAAATACGGCAAGTATTTTTTGTGATCTTGATATTGATCA
CATTGAATACTTTCAAACATCATGTCGACAGCAGTGTAAAAAGCAATTAC
GTAAGATGGAGGCACTGGGTTATCGATTCTTCAGCTCCTTTGAGTATGAG
TTCTATCTTGTTGATAAAGATACTTTGAAACCCGT

Coding sequence (CDS) from alignment at scaffold_182:16196..17780

>TCONS_00050676 ID=TCONS_00050676|Name=TCONS_00050676|organism=Clytia hemisphaerica|type=CDS|length=1581bp|location=Sequence derived from alignment at scaffold_182:16196..17780 (Clytia hemisphaerica)
GATCTATGTGGAACGATCAAATGTCTCTTTATGAATTCAGAATCTTTCAT
CTACGGCTTGCCAAGTAATTTTCATATGGGATCTCCATCCATGCTGATGC
TTCCTGATGGGAAAGGTGTCGACGGTACTGGATTAACATTTGAAATCAAC
AATCCAAACGCCAAACTCGCACCCGAACTTGAAACTTTCAAATCATTACC
ATGGCTTCAAAATACGGCAAGTATTTTTTGTGATCTTGATATTGATCACA
TTGAATACTTTCAAACATCATGTCGACAGCAGTGTAAAAAGCAATTACGT
AAGATGGAGGCACTGGGTTATCGATTCTTCAGCTCCTTTGAGTATGAGTT
CTATCTTGTTGATAAAGATACTTTGAAACCCGTTTATGAAGAGAGTAACT
GGTACTCCGAAGAACATATTGATCGTATACGACCCTTCATCCAAGATGTC
ATGTCGTATCTACAGAAAACTGGGATTCAAGTTGAGGCCTTCACATCTGA
GGATGGCCCTGCCCAACAAGAATTAACTATGAAGCCAACGTTTGGAATAC
AAGCTTCCGATAACGCAATGTTATTTAAGAAAGCTGTTAAAAGTTCTGCA
CAGAAACATCATATGAAAGCCTTGTTTATGACGCAGCCATTTGAAGACCA
TTCACATTGCTCCAGTCATTTCAATCACTCCATCTGGCAATTAAGCAAAA
AAGAAAACGCTTTTTCCCAGATCAACAAAGATGATAAGTTATCAGATATC
TGTAAATATTGGATTGCTGGACTGCAACACCATTCAAAAGCACTGCCAGC
TTTATATTGGGCCACCAATAATTGTGTTGAGAAGTGTCTGGCTAAAGATA
GCCAAGACAGCTATTTCGTTCCTTCGAACAACACGTGGGGCTACGATCAC
CGCGGTGTACGTTTCCGTATAAAGAATTACAGCCCCTCATGCACCTACAT
CGAAGACCGGCTGCCCGGAGCAGGGTGTAATCCGTACTTAGTCACTACTG
GATGCTTAATTGCGGGAATGGACGGTATCAATCGGAAGCTTCCTCTCAAA
TCAGAAGCCTTCTTTGGAAACATACTGGAGGCTGCTGGGTTACCACTAGG
AGCTGAAAAGGTTCCTGAAAGCTTGGAAAAAGCAATAGAATACTTAAAGG
AGGATNagataaaagaaaaaaaaatcgaattcgTGCAATTAGAAGCCATT
GATCTATGTGGAACGATCAAATGTCTCTTTATGAATTCAGAATCTTTCAT
CTACGGCTTGCCAAGTAATTTTCATATGGGATCTCCATCCATGCTGATGC
TTCCTGATGGGAAAGGTGTCGACGGTACTGGATTAACATTTGAAATCAAC
AATCCAAACGCCAAACTCGCACCCGAACTTGAAACTTTCAAATCATTACC
ATGGCTTCAAAATACGGCAAGTATTTTTTGTGATCTTGATATTGATCACA
TTGAATACTTTCAAACATCATGTCGACAGCAGTGTAAAAAGCAATTACGT
AAGATGGAGGCACTGGGTTATCGATTCTTCAGCTCCTTTGAGTATGAGTT
CTATCTTGTTGATAAAGATACTTTGAAACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032105XLOC_032105Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050676-proteinTCONS_00050676-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050676-exon-scaffold_182-1491911889:16196..17780TCONS_00050676-exon-scaffold_182-1491911889:16196..17780Clytia hemisphaericaexon
TCONS_00050676-exon-scaffold_182-1510915933:16196..17780TCONS_00050676-exon-scaffold_182-1510915933:16196..17780Clytia hemisphaericaexon
TCONS_00050676-exon-scaffold_182-1575043694:16196..17780TCONS_00050676-exon-scaffold_182-1575043694:16196..17780Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_182supercontigscaffold_182:16196..17780 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0257832	0.0502854	0.0583862	0.0571218	0.938794	1.04408	1.06075	1.42753	1.86853	1.99152	0.261219	0.446459	0.850897	0.534239	0.0585623	0	0	0	0	0	0	0	0	0	0.0276823	0.0247058	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008146Gln_synth_cat_dom
IPR014746Gln_synth/guanido_kin_cat_dom
IPR008147Gln_synt_b-grasp
Vocabulary: Molecular Function
TermDefinition
GO:0004356glutamate-ammonia ligase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006807nitrogen compound metabolic process
GO:0006542glutamine biosynthetic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006542 glutamine biosynthetic process
biological_process GO:0006807 nitrogen compound metabolic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004356 glutamate-ammonia ligase activity
Blast
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BLAST of TCONS_00050676 vs. Swiss-Prot (Human)
Match: LGSN (Lengsin OS=Homo sapiens GN=LGSN PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.582e-40
Identity = 116/355 (32.68%), Postives = 180/355 (50.70%), Query Frame = -3 
Query:  453 MLPDGKGVDGTGLTFEINNPNAKLAPELETFKSLPWLQNTASIFCDLDIDHIEYFQTSCRQQCKKQLRKMEALGYRXXXXXXXXXYLVDKDTL---KPVYEESNWYSEEHIDRIRPFIQDVMSYLQKTGIQVEAFTSEDGPAQQELTMKPTFGIQASDNAMLFKKAVKSSAQKHHMKALFMTQPFEDHSHCSSH-FNHSIWQLSKKENAFSQINKDDKLSDICKYWIAGLQHHSKALPALYWATNNCVEKCLAKDSQD-SYFVPSNNTWGYDHRGVRFRIKNYSPSCTYIEDRLPGAGCNPYLVTTGCLIAGMDGI---NRKL--PLKSEAFFGNILEAAGLPLGAEKVPESLEK 1487
            ++P+ K  +   +     N +  L PEL TF+ LPW   TA + CD      E   TS R   K+QL  ++A G+   S+F Y+F +     +   K +   +  +   H    +PF+Q+++  L  TG  VE+F+S   P Q E++  P FGI ++DNA   +  VK  A+K++  A F    F +   C S   +HS+W + +K+N F   +  ++L+   K W+AGL  HS AL  L   + +C  K  +KD +D    VP+  TWGY+     F IK +    T IE++L  A  NPYLV    + AG+DG+   N  L  P +S  F+   +E + +PL  E    +LE+
Sbjct:  126 VIPNPKDNEMNNIRATCFNSDIVLMPELSTFRVLPWADRTARVICDTFTVTGEPLLTSPRYIAKRQLSHLQASGFSLLSAFIYDFCIFGVPEILNSKIISFPALTFLNNHD---QPFMQELVDGLYHTGANVESFSSSTRPGQMEISFLPEFGISSADNAFTLRTGVKEVARKYNYIASF----FIETGFCDSGILSHSLWDVDRKKNMFCSTSGTEQLTITGKKWLAGLLKHSAALSCLMAPSVSC-RKRYSKDRKDLKKSVPT--TWGYNDNSCIFNIKCHGEKGTRIENKLGSATANPYLVLAATVAAGLDGLHSSNEVLAGPDESTDFYQ--VEPSEIPLKLEDALVALEE 468
The following BLAST results are available for this feature:
BLAST of TCONS_00050676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LGSN8.582e-4032.68Lengsin OS=Homo sapiens GN=LGSN PE=1 SV=1[more]
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