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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050678 ID=TCONS_00050678|Name=TCONS_00050678|organism=Clytia hemisphaerica|type=transcript|length=2692bp
TATTGGCGATCATTTTTGCTTAAAAGCAAAGTAGTGGTTTTTGTTGATCA
CTTTGCTTTCCAAACTATCCTGGTGATTGAAATGAAGGATGGTGtgttta
ttgatatttttaacttGCTTAACTATAGAAATGACTGTAAAGTGAGCAGA
ATAGCAACGATATACGTTGAATTAAACAAAACGACAGTTTGTGATGTCAA
AACGAAACTATACAAAGAGACAAAGataccaactgaaaatcaaattattt
ttcgatGCACAGAAAAATctggaaaacaaaaaaactcgTCAGCAGACAAA
TTTTGGTTAAGCAAGAACAATTCTTTACAAAACGCGTATGAACCTTACAC
GAATGATGGTGATTTTATATTGGACTCAAAGAATTACCAGAGCTGGGATT
TCACcgattatttattttgtttgtttattgaaCACAGTCTTTACCATAAT
ACAAATATCAGACTCCGGCTGTCCAAGATTACTTTCAAGCTTACAGAAGA
CATAGCTCTAGCAACATTTACGCCAAACACTCAAATCCATCCTTGGCTtt
tctcaatttcaagcatattGAAAAGTGACTTACTAAAAGGATTTCCAATT
GAAAGAGTTCtattttataaatatacttTTTGCAACATGATTCAATCTTA
CAATGAAGTTACTTGGCTTGATAAGTTGGTAGAAACTTCAATAGTAGGAG
GTGATTTTATAGCCTATATCGGTTTATTAAGACAGCCGGAATCTGAGAGC
TCAAAATCCTCAACGTGTCATCCAGATATAGGATTATGCCGGAGTTTACC
AAATGTCAGTATATTCAATACTCAGAACGAAATTATTACCCAATGGTACC
CTAACAATACTGAATGTACAGGATTAATTGAATTTATCGAAGAAGAATTA
AATATTCCAGTTGATTGCCAAGTGCTATATTACAATGGAGTTTACTGGAA
TGGGAACAAATCGTTACTGGatataatgtttttgaatggaCAAGAGTCTA
CTTTAGAATTTCAAATTGCCTGCACAAGATGTCCAAAAGATTccgaaaat
gattttaaaatgtcttttgaaaaatacaacttGCAAGCTTTTCGCTCTGT
CCGTATCTTGGATAAGGAATATGGCAAAGTTATATTTGACAATTTCTTGG
ATCATATAAGTGGTGATTGTTGGACGTGGGTTATCTTTTTACGATCAATG
ATTACTAAAATGTACGGTATCAAAAATTATTCCATACAAATTTTTGACAG
TTATGGTCAAGAAGTCAGTGCTAATTTATATTTGATGCCTTTTTTCGTCA
ATGATAGTAAATTCAATGAAGATATATGTCTTTATATAAAAATCGCATCG
AGTGATAAGCAAAAGTTTTATTTCAAATTGTTCGGCTTGCAGACTGTAGT
GCTCCGATCTTTGACTAAAACACAAGAGTTGGACGTTTCTAAGTATCACT
CGGTGAAATCAATAAGAAATTTTATGGAAAGAGAATTCAAGATTCCTTCA
CATTTACAGATATACATGCTTAAACAGAAAGAGGTTGAAAATACTGACGA
ATTTTATCATCTTTTCAGGCAATATGCTAGCCCTGAAGAAAGGAGAAATG
GGAAATTATATATCAATTTAATCACTGATGTTCCAAAAGAGATTGAAATC
GAATGCCAAACAAACCCTTACAATCCAAATAGATATCGGAATATAATACC
AGCATCTTTCAAAGTCAAAGAAACTGATTCTATCATAGATGCTGAAAACA
AACTTTCTGAATTATTATCGTTCAGAGTAAGCTTGCAACCACCACAAGGA
CTTTTTAGTGAAAGTGAATGTTTTTTAGTACCAAAAGACCAATACCAAAT
TTACGAGCTAGTCAGGGCATGTAAAGAAATGCCCTCGTTGTTAGTCAATA
GGGTGATAACCATCAATTTTCATTCCTGTAGAAAGTgccttcattctttt
ttatttcaaaaatcccTTGAATTAAGGGGTGGCATGTGTTTGAAAGCTAT
TGGTCAATATTTAGCTGGATGTAACATAGAATATATGGACAATCTTTGTT
GTGATAAAACGGCatggaaaatgtcaaaagatATGCAAACACAAATTTcg
aagaaaacatttttaatagaTATTCCTTTTGGTATGGAGTCTATAGACGT
TCAAGCAGAACATTCTACTAAACTATCCTTTAAGAAGCTTCTGTGGAAAT
AATCTGGTTATGCTTCATTTGGTCGTCACATaagaacacccctgtgtcac
agacccactgagaccccagccccactggaaaatttggcaaaaatttcgtc
cccgatgAAAAAATATCCTGGaaattcagccccactgggaaaatgacttt
gatttcatcgaAATTCAATGGTTAAAagttgtactccaaaaccatcccca
actggatttttttaaccgtggaacaatagaatttatgTCCCCATCTGTAT
TTCAatatgaatttttatccccactggggAAAAAGGTTCCAGTGGGACTG
TGAGACAAAGGTGTATAAGACTTGCATTTGTGTAATATGGTAATCTTTTT
ATAGAAATTCAATGTATGGAAAATATATCTTTCTATGTAACACCCCTTCT
ATAATTCATACACatatggaaaatattttcacatTATTGCGAAATTCAAC
TTATTTTGTTTCagtaatttttttgtaattgctaatgaaaat Run BLAST on NCBI protein sequence of TCONS_00050678-protein >TCONS_00050678-protein ID=TCONS_00050678-protein|Name=TCONS_00050678-protein|organism=Clytia hemisphaerica|type=polypeptide|length=733bp
YWRSFLLKSKVVVFVDHFAFQTILVIEMKDGVFIDIFNLLNYRNDCKVSR
IATIYVELNKTTVCDVKTKLYKETKIPTENQIIFRCTEKSGKQKNSSADK
FWLSKNNSLQNAYEPYTNDGDFILDSKNYQSWDFTDYLFCLFIEHSLYHN
TNIRLRLSKITFKLTEDIALATFTPNTQIHPWLFSISSILKSDLLKGFPI
ERVLFYKYTFCNMIQSYNEVTWLDKLVETSIVGGDFIAYIGLLRQPESES
SKSSTCHPDIGLCRSLPNVSIFNTQNEIITQWYPNNTECTGLIEFIEEEL
NIPVDCQVLYYNGVYWNGNKSLLDIMFLNGQESTLEFQIACTRCPKDSEN
DFKMSFEKYNLQAFRSVRILDKEYGKVIFDNFLDHISGDCWTWVIFLRSM
ITKMYGIKNYSIQIFDSYGQEVSANLYLMPFFVNDSKFNEDICLYIKIAS
SDKQKFYFKLFGLQTVVLRSLTKTQELDVSKYHSVKSIRNFMEREFKIPS
HLQIYMLKQKEVENTDEFYHLFRQYASPEERRNGKLYINLITDVPKEIEI
ECQTNPYNPNRYRNIIPASFKVKETDSIIDAENKLSELLSFRVSLQPPQG
LFSESECFLVPKDQYQIYELVRACKEMPSLLVNRVITINFHSCRKCLHSF
LFQKSLELRGGMCLKAIGQYLAGCNIEYMDNLCCDKTAWKMSKDMQTQIS
KKTFLIDIPFGMESIDVQAEHSTKLSFKKLLWK Run BLAST on NCBI transcript from alignment at scaffold_182:32333..35024 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050678 ID=TCONS_00050678|Name=TCONS_00050678|organism=Clytia hemisphaerica|type=transcript|length=2692bp|location=Sequence derived from alignment at scaffold_182:32333..35024 (Clytia hemisphaerica)
attttcattagcaattacaaaaaaattactGAAACAAAATAAGTTGAATT
TCGCAATAatgtgaaaatattttccatatGTGTATGAATTATAGAAGGGG
TGTTACATAGAAAGATATATTTTCCATACATTGAATTTCTATAAAAAGAT
TACCATATTACACAAATGCAAGTCTTATACACCTTTGTCTCACAGTCCCA
CTGGAACCTTTTTccccagtggggataaaaattcatatTGAAATACAGAT
GGGGAcataaattctattgttccacggttaaaaaaatccagttggggatg
gttttggagtacaactTTTAACCATTGAATTtcgatgaaatcaaagtcat
tttcccagtggggctgaatttCCAGGATATTTTTTcatcggggacgaaat
ttttgccaaattttccagtggggctggggtctcagtgggtctgtgacaca
ggggtgttcttATGTGACGACCAAATGAAGCATAACCAGATTATTTCCAC
AGAAGCTTCTTAAAGGATAGTTTAGTAGAATGTTCTGCTTGAACGTCTAT
AGACTCCATACCAAAAGGAATAtctattaaaaatgttttcttcgAAATTT
GTGTTTGCATatcttttgacattttccatGCCGTTTTATCACAACAAAGA
TTGTCCATATATTCTATGTTACATCCAGCTAAATATTGACCAATAGCTTT
CAAACACATGCCACCCCTTAATTCAAgggatttttgaaataaaaaagaat
gaaggcACTTTCTACAGGAATGAAAATTGATGGTTATCACCCTATTGACT
AACAACGAGGGCATTTCTTTACATGCCCTGACTAGCTCGTAAATTTGGTA
TTGGTCTTTTGGTACTAAAAAACATTCACTTTCACTAAAAAGTCCTTGTG
GTGGTTGCAAGCTTACTCTGAACGATAATAATTCAGAAAGTTTGTTTTCA
GCATCTATGATAGAATCAGTTTCTTTGACTTTGAAAGATGCTGGTATTAT
ATTCCGATATCTATTTGGATTGTAAGGGTTTGTTTGGCATTCGATTTCAA
TCTCTTTTGGAACATCAGTGATTAAATTGATATATAATTTCCCATTTCTC
CTTTCTTCAGGGCTAGCATATTGCCTGAAAAGATGATAAAATTCGTCAGT
ATTTTCAACCTCTTTCTGTTTAAGCATGTATATCTGTAAATGTGAAGGAA
TCTTGAATTCTCTTTCCATAAAATTTCTTATTGATTTCACCGAGTGATAC
TTAGAAACGTCCAACTCTTGTGTTTTAGTCAAAGATCGGAGCACTACAGT
CTGCAAGCCGAACAATTTGAAATAAAACTTTTGCTTATCACTCGATGCGA
TTTTTATATAAAGACATATATCTTCATTGAATTTACTATCATTGACGAAA
AAAGGCATCAAATATAAATTAGCACTGACTTCTTGACCATAACTGTCAAA
AATTTGTATGGAATAATTTTTGATACCGTACATTTTAGTAATCATTGATC
GTAAAAAGATAACCCACGTCCAACAATCACCACTTATATGATCCAAGAAA
TTGTCAAATATAACTTTGCCATATTCCTTATCCAAGATACGGACAGAGCG
AAAAGCTTGCaagttgtatttttcaaaagacattttaaaatcattttcgg
AATCTTTTGGACATCTTGTGCAGGCAATTTGAAATTCTAAAGTAGACTCT
TGtccattcaaaaacattatatCCAGTAACGATTTGTTCCCATTCCAGTA
AACTCCATTGTAATATAGCACTTGGCAATCAACTGGAATATTTAATTCTT
CTTCGATAAATTCAATTAATCCTGTACATTCAGTATTGTTAGGGTACCAT
TGGGTAATAATTTCGTTCTGAGTATTGAATATACTGACATTTGGTAAACT
CCGGCATAATCCTATATCTGGATGACACGTTGAGGATTTTGAGCTCTCAG
ATTCCGGCTGTCTTAATAAACCGATATAGGCTATAAAATCACCTCCTACT
ATTGAAGTTTCTACCAACTTATCAAGCCAAGTAACTTCATTGTAAGATTG
AATCATGTTGCAAAaagtatatttataaaataGAACTCTTTCAATTGGAA
ATCCTTTTAGTAAGTCACTTTTCaatatgcttgaaattgagaaaAGCCAA
GGATGGATTTGAGTGTTTGGCGTAAATGTTGCTAGAGCTATGTCTTCTGT
AAGCTTGAAAGTAATCTTGGACAGCCGGAGTCTGATATTTGTATTATGGT
AAAGACTGTGttcaataaacaaacaaaataaataatcgGTGAAATCCCAG
CTCTGGTAATTCTTTGAGTCCAATATAAAATCACCATCATTCGTGTAAGG
TTCATACGCGTTTTGTAAAGAATTGTTCTTGCTTAACCAAAATTTGTCTG
CTGAcgagtttttttgttttccagATTTTTCTGTGCatcgaaaaataatt
tgattttcagttggtatCTTTGTCTCTTTGTATAGTTTCGTTTTGACATC
ACAAACTGTCGTTTTGTTTAATTCAACGTATATCGTTGCTATTCTGCTCA
CTTTACAGTCATTTCTATAGTTAAGCaagttaaaaatatcaataaacaCA
CCATCCTTCATTTCAATCACCAGGATAGTTTGGAAAGCAAAGTGATCAAC
AAAAACCACTACTTTGCTTTTAAGCAAAAATGATCGCCAATA Coding sequence (CDS) from alignment at scaffold_182:32333..35024 >TCONS_00050678 ID=TCONS_00050678|Name=TCONS_00050678|organism=Clytia hemisphaerica|type=CDS|length=2202bp|location=Sequence derived from alignment at scaffold_182:32333..35024 (Clytia hemisphaerica)
TTATTTCCACAGAAGCTTCTTAAAGGATAGTTTAGTAGAATGTTCTGCTT
GAACGTCTATAGACTCCATACCAAAAGGAATAtctattaaaaatgttttc
ttcgAAATTTGTGTTTGCATatcttttgacattttccatGCCGTTTTATC
ACAACAAAGATTGTCCATATATTCTATGTTACATCCAGCTAAATATTGAC
CAATAGCTTTCAAACACATGCCACCCCTTAATTCAAgggatttttgaaat
aaaaaagaatgaaggcACTTTCTACAGGAATGAAAATTGATGGTTATCAC
CCTATTGACTAACAACGAGGGCATTTCTTTACATGCCCTGACTAGCTCGT
AAATTTGGTATTGGTCTTTTGGTACTAAAAAACATTCACTTTCACTAAAA
AGTCCTTGTGGTGGTTGCAAGCTTACTCTGAACGATAATAATTCAGAAAG
TTTGTTTTCAGCATCTATGATAGAATCAGTTTCTTTGACTTTGAAAGATG
CTGGTATTATATTCCGATATCTATTTGGATTGTAAGGGTTTGTTTGGCAT
TCGATTTCAATCTCTTTTGGAACATCAGTGATTAAATTGATATATAATTT
CCCATTTCTCCTTTCTTCAGGGCTAGCATATTGCCTGAAAAGATGATAAA
ATTCGTCAGTATTTTCAACCTCTTTCTGTTTAAGCATGTATATCTGTAAA
TGTGAAGGAATCTTGAATTCTCTTTCCATAAAATTTCTTATTGATTTCAC
CGAGTGATACTTAGAAACGTCCAACTCTTGTGTTTTAGTCAAAGATCGGA
GCACTACAGTCTGCAAGCCGAACAATTTGAAATAAAACTTTTGCTTATCA
CTCGATGCGATTTTTATATAAAGACATATATCTTCATTGAATTTACTATC
ATTGACGAAAAAAGGCATCAAATATAAATTAGCACTGACTTCTTGACCAT
AACTGTCAAAAATTTGTATGGAATAATTTTTGATACCGTACATTTTAGTA
ATCATTGATCGTAAAAAGATAACCCACGTCCAACAATCACCACTTATATG
ATCCAAGAAATTGTCAAATATAACTTTGCCATATTCCTTATCCAAGATAC
GGACAGAGCGAAAAGCTTGCaagttgtatttttcaaaagacattttaaaa
tcattttcggAATCTTTTGGACATCTTGTGCAGGCAATTTGAAATTCTAA
AGTAGACTCTTGtccattcaaaaacattatatCCAGTAACGATTTGTTCC
CATTCCAGTAAACTCCATTGTAATATAGCACTTGGCAATCAACTGGAATA
TTTAATTCTTCTTCGATAAATTCAATTAATCCTGTACATTCAGTATTGTT
AGGGTACCATTGGGTAATAATTTCGTTCTGAGTATTGAATATACTGACAT
TTGGTAAACTCCGGCATAATCCTATATCTGGATGACACGTTGAGGATTTT
GAGCTCTCAGATTCCGGCTGTCTTAATAAACCGATATAGGCTATAAAATC
ACCTCCTACTATTGAAGTTTCTACCAACTTATCAAGCCAAGTAACTTCAT
TGTAAGATTGAATCATGTTGCAAAaagtatatttataaaataGAACTCTT
TCAATTGGAAATCCTTTTAGTAAGTCACTTTTCaatatgcttgaaattga
gaaaAGCCAAGGATGGATTTGAGTGTTTGGCGTAAATGTTGCTAGAGCTA
TGTCTTCTGTAAGCTTGAAAGTAATCTTGGACAGCCGGAGTCTGATATTT
GTATTATGGTAAAGACTGTGttcaataaacaaacaaaataaataatcgGT
GAAATCCCAGCTCTGGTAATTCTTTGAGTCCAATATAAAATCACCATCAT
TCGTGTAAGGTTCATACGCGTTTTGTAAAGAATTGTTCTTGCTTAACCAA
AATTTGTCTGCTGAcgagtttttttgttttccagATTTTTCTGTGCatcg
aaaaataatttgattttcagttggtatCTTTGTCTCTTTGTATAGTTTCG
TTTTGACATCACAAACTGTCGTTTTGTTTAATTCAACGTATATCGTTGCT
ATTCTGCTCACTTTACAGTCATTTCTATAGTTAAGCaagttaaaaatatc
aataaacaCACCATCCTTCATTTCAATCACCAGGATAGTTTGGAAAGCAA
AGTGATCAACAAAAACCACTACTTTGCTTTTAAGCAAAAATGATCGCCAA
TA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050678-exon-scaffold_182-1491911889:32333..35024 | TCONS_00050678-exon-scaffold_182-1491911889:32333..35024 | Clytia hemisphaerica | exon |
| TCONS_00050678-exon-scaffold_182-1510915933:32333..35024 | TCONS_00050678-exon-scaffold_182-1510915933:32333..35024 | Clytia hemisphaerica | exon |
| TCONS_00050678-exon-scaffold_182-1575043694:32333..35024 | TCONS_00050678-exon-scaffold_182-1575043694:32333..35024 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_182 | supercontig | scaffold_182:32333..35024 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029071 | Ubiquitin-rel_dom |
Blast
The following BLAST results are available for this feature:
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