TCONS_00050680 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050680
Unique NameTCONS_00050680
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length767

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050680 ID=TCONS_00050680|Name=TCONS_00050680|organism=Clytia hemisphaerica|type=transcript|length=767bp
NTCAGATAAAAATTGTTCAACAAAAGCTTTGTCAGACTCGAGGTACTTCG
ACATGTGTTGACGAATCGTACCATTGAGTAAAAAAGGACTAGACGTCAAA
CCAAAAACAACTCTCAAAAAACGATAGACAACGACTTCTCTATCAGAGGA
CAGAGGGTCTCTCCAGAGAAATCTCAAAAAATCTCTATGATCAGGATGGA
TGCTGATATTCAAGAAAGCTTGCTTGATATCAGCTAAAATACCAATCTTG
TTCATTCTAAAACTtagtaaaatgtcaaaaatcttAGCAAGTAAATTTGG
ACCAGGATAAAGGCAATCATTCAAGGATACACCATTGACAGAACAAGAAG
CATCAAGCACGGGCCTTATCTTAGTGGTGACCTTGTCTTCACGGATAACT
GGTCTATGGGGAATGTAATGAACGGTACCCTCCTCTTTCGCAATCTGCGC
CTCGGGCACACGTTCGATAATTCCGTCTTTCTCataatcaataaaatttt
tctcGTAGTCAGCATTGATACCAAGACGATCGAGACGCGAATTAAGGGAT
TCCAGACGTTTCACACAGGCACACTCTCGTGGTCAGGCTTGAAAGACAGT
TTCGCGACATACCTAGTACCATCATGGTAAATGTCTTTGGTAAATTGGTT
AATCACTGAGTTATCCTCGGCACTCTCTGCCTCCTCTATCTGCCAAAACT
TATGGAGCTTGGCATCAAGTGGATCAACAGTTTGTACCTCAACTCTCATT
TGATGACTATAAGTTAC
Run BLAST on NCBI

transcript from alignment at scaffold_182:62712..63478

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050680 ID=TCONS_00050680|Name=TCONS_00050680|organism=Clytia hemisphaerica|type=transcript|length=767bp|location=Sequence derived from alignment at scaffold_182:62712..63478 (Clytia hemisphaerica)
GTAACTTATAGTCATCAAATGAGAGTTGAGGTACAAACTGTTGATCCACT
TGATGCCAAGCTCCATAAGTTTTGGCAGATAGAGGAGGCAGAGAGTGCCG
AGGATAACTCAGTGATTAACCAATTTACCAAAGACATTTACCATGATGGT
ACTAGGTATGTCGCGAAACTGTCTTTCAAGCCTGACCACGAGAGTGTGCC
TGTGTGAAACGTCTGGAATCCCTTAATTCGCGTCTCGATCGTCTTGGTAT
CAATGCTGACTACgagaaaaattttattgattatGAGAAAGACGGAATTA
TCGAACGTGTGCCCGAGGCGCAGATTGCGAAAGAGGAGGGTACCGTTCAT
TACATTCCCCATAGACCAGTTATCCGTGAAGACAAGGTCACCACTAAGAT
AAGGCCCGTGCTTGATGCTTCTTGTTCTGTCAATGGTGTATCCTTGAATG
ATTGCCTTTATCCTGGTCCAAATTTACTTGCTaagatttttgacatttta
ctaAGTTTTAGAATGAACAAGATTGGTATTTTAGCTGATATCAAGCAAGC
TTTCTTGAATATCAGCATCCATCCTGATCATAGAGATTTTTTGAGATTTC
TCTGGAGAGACCCTCTGTCCTCTGATAGAGAAGTCGTTGTCTATCGTTTT
TTGAGAGTTGTTTTTGGTTTGACGTCTAGTCCTTTTTTACTCAATGGTAC
GATTCGTCAACACATGTCGAAGTACCTCGAGTCTGACAAAGCTTTTGTTG
AACAATTTTTATCTGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032109XLOC_032109Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050680-exon-scaffold_182-1491911889:62712..63478TCONS_00050680-exon-scaffold_182-1491911889:62712..63478Clytia hemisphaericaexon
TCONS_00050680-exon-scaffold_182-1510915933:62712..63478TCONS_00050680-exon-scaffold_182-1510915933:62712..63478Clytia hemisphaericaexon
TCONS_00050680-exon-scaffold_182-1575043694:62712..63478TCONS_00050680-exon-scaffold_182-1575043694:62712..63478Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_182supercontigscaffold_182:62712..63478 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.456972	0	0.232616	0.281719	73.4062	53.7208	6.65841	4.93029	0.419723	0.991869	0.406609	0.324505	0.431712	0.514936	0.154348	0.845699	0.51784	0.268849	0.337906	1.56136	0.275007	0.105153	0.105443	0.27929	0.341316	0.425283	0.313383	0	0.237595	0.688054
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050680 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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