TCONS_00050682 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050682
Unique NameTCONS_00050682
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050682 ID=TCONS_00050682|Name=TCONS_00050682|organism=Clytia hemisphaerica|type=transcript|length=305bp
NNGTTTAGCTTTGATGTTGGAGACGAAGCGGTATACAAGTGCGGTaactt
taatcaatttttgtaAGGTGCTGTATCTACCAACATCAATGATTTTGCTC
AGGCTGATCTCATTGTCAGATTTGTCAGtcgtaaaaagaaaagaaacttc
ATCCTTGCACTCAAAAGGATCATAAGAAGAACGACCATCAAAGTCAACAA
AACGATTCCGAGCTTCAGAAAGAACGTCAGACTTATCAGTGTCGAGAAGA
GAAGATTCGttagaaagaaaagaagaaagcttATCTTCGTCAAAGAGTAT
CTCNN
Run BLAST on NCBI

protein sequence of TCONS_00050682-protein

>TCONS_00050682-protein ID=TCONS_00050682-protein|Name=TCONS_00050682-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
EILFDEDKLSSFLSNESSLLDTDKSDVLSEARNRFVDFDGRSSYDPFECK
DEVSFLFTTDKSDNEISLSKIIDVGRYSTLQKLIKVTALVYRFVSNIKAK
X
Run BLAST on NCBI

transcript from alignment at scaffold_182:64469..64773

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050682 ID=TCONS_00050682|Name=TCONS_00050682|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at scaffold_182:64469..64773 (Clytia hemisphaerica)
NNGAGATACTCTTTGACGAAGATaagctttcttcttttctttctaaCGAA
TCTTCTCTTCTCGACACTGATAAGTCTGACGTTCTTTCTGAAGCTCGGAA
TCGTTTTGTTGACTTTGATGGTCGTTCTTCTTATGATCCTTTTGAGTGCA
AGGATgaagtttcttttctttttacgaCTGACAAATCTGACAATGAGATC
AGCCTGAGCAAAATCATTGATGTTGGTAGATACAGCACCTtacaaaaatt
gattaaagttACCGCACTTGTATACCGCTTCGTCTCCAACATCAAAGCTA
AACNN

Coding sequence (CDS) from alignment at scaffold_182:64469..64773

>TCONS_00050682 ID=TCONS_00050682|Name=TCONS_00050682|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_182:64469..64773 (Clytia hemisphaerica)
GAGATACTCTTTGACGAAGATaagctttcttcttttctttctaaCGAATC
TTCTCTTCTCGACACTGATAAGTCTGACGTTCTTTCTGAAGCTCGGAATC
GTTTTGTTGACTTTGATGGTCGTTCTTCTTATGATCCTTTTGAGTGCAAG
GATgaagtttcttttctttttacgaCTGACAAATCTGACAATGAGATCAG
CCTGAGCAAAATCATTGATGTTGGTAGATACAGCACCTtacaaaaattga
ttaaagttACCGCACTTGTATACCGCTTCGTCTCCAACATCAAAGCTAAA
CNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032111XLOC_032111Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050682-exon-scaffold_182-1491911889:64469..64773TCONS_00050682-exon-scaffold_182-1491911889:64469..64773Clytia hemisphaericaexon
TCONS_00050682-exon-scaffold_182-1510915933:64469..64773TCONS_00050682-exon-scaffold_182-1510915933:64469..64773Clytia hemisphaericaexon
TCONS_00050682-exon-scaffold_182-1575043694:64469..64773TCONS_00050682-exon-scaffold_182-1575043694:64469..64773Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050682-proteinTCONS_00050682-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_182supercontigscaffold_182:64469..64773 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.36927	0	2.76207	2.04526	22.5552	13.699	1.72688	4.26351	0.681841	2.71761	4.10632	2.07445	0.325544	0	0.446735	2.49138	0.665321	1.05039	0.922526	2.12064	1.47529	0	0	1.63234	0	0	0.528859	0	0	0.454
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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