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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050683 ID=TCONS_00050683|Name=TCONS_00050683|organism=Clytia hemisphaerica|type=transcript|length=1803bp
ggcttcatttcctacaaaaagtttcaaatgtAGCCCCTACATCCCCCCCA
GGACTTTGTGAAGTTAATAATAATGCAGACCAGTTAAAAAAATTGATCAG
AATCAGGTTATTGCTTTAAAAGcattcagaggtttaccgtgcgcgtaaga
aaattatgaccagctgttatcaggttataaAAGTAAAGCTtgttatgaaa
tatttttattctagCTAGAAAAACAAACACTGTAAAGAATGACTTCCAAT
CTTAAGACACCAGCAGAATTCAATGGAAAGGCCAGTGAAGATagtgtttt
attgaaaaacccAACAAACTTTACAAGCAAATTAAACTTGGGACTGGACA
AGcgagcaaaaattgaaaatcaggaTATCTCCCGAATGAAAAAACCCAGT
GATTTTACTGTGAATCCTCTGCTTTCAAAGCAATCTAtttcaaagaaagt
tttgaataaaCAAGTAGTGGAACCTCCTGCATTGGAGAAAAGAGAAGTct
ctaaaaattcaattttaagcAAACAGTTGTCACATGTTGATGAGCAGTTT
TATAAAGAATCAATCAGAAAACTTCAGAAAAGTATCACAGATAAGGATCT
TGATTGGAAGTTATCCgaagaaaaatggaaaacaaaattaaaagctAAAG
AACAGGAAGTTGCTGATCTGACTAATAAACTTGATGAAACCAAAATGCAT
TGTCAGATGCTGTCGTCAGAGCACAATAATAaagattcaaaatattttct
tgaagTCAAATCCGTTTATGAGAAGTATATTAATTTGCAGCAACAATTCG
ATTCTGAAAAGAATAAATTGCTATCTAAAATTGATCAACTTGAATGTCAA
AAGGCTGCTTTGAAATCTGAGAATAACTTTTTGAAAGATGCAATTAAAGA
TGGCGAACTCAAAGTGACTTTCCTTAATAATCAAGTCTCTGAAATCCAAA
ACAGCAAAGTTTCTATTGCTCAGgagcaagaaaaagaaaaagatgaatAT
CTCCAAATGATTGAACATTTGAATGTAGAGAATGGAGAATTAAAAAAGCG
ATGTAATAGCTTGAAGGATGAtaatacaaaattttcaaatgaaattattA
CAAAAGAACATTTGATTAAAGAGATGTCATTAGAACTTAAAGCACAAAAA
TCTCTTCTTTCTACCAAGGGTTCTGAGATTTCATCTTTAATGCAAGAAAA
TTTAGATGTGTGCAATGAAAAGAAGATGCTTGAAGAGAAACATGGTGACA
TTTGTAACGAACTACattgtttgaaagaaaaatatcacaACGAAATGACA
GAATACGGATATACACAAAACGAgttaacaaaaatgaaaaatatccttga
tgaaacaaaatttgagcttgttgccaaaacaaaagatatttttgagcTAG
AGAAAACCTGTAACACCTTACAATGTTCTAACAAACAATTGAACCTACAG
TCTGAAGCTTTATCTGAACTGTTGAAACTACAAGATAACGTTTTGAGTCT
ATCCAAAACTAACAAAATCGGAAATGCTGTTGTTTTGTGGAGACAGAAAG
TTTACCAGCTTTTGGTATTGTTGAAATCTAAGGAGATGGATGAATtctga
aatttgttttttttttaagttaaatttaATTGCACCAATGGTCTTTGtaa
atgatatattttgttataaatgttttaaatttaataaattacgtttaaat
ttttattgttctttaaattacatttaaatttttattgttcttcAATCCTC
ATTATGAGTACTAATTAAGACCcttttttgaattgaaatattcttaatat
CAG Run BLAST on NCBI protein sequence of TCONS_00050683-protein >TCONS_00050683-protein ID=TCONS_00050683-protein|Name=TCONS_00050683-protein|organism=Clytia hemisphaerica|type=polypeptide|length=453bp
MTSNLKTPAEFNGKASEDSVLLKNPTNFTSKLNLGLDKRAKIENQDISRM
KKPSDFTVNPLLSKQSISKKVLNKQVVEPPALEKREVSKNSILSKQLSHV
DEQFYKESIRKLQKSITDKDLDWKLSEEKWKTKLKAKEQEVADLTNKLDE
TKMHCQMLSSEHNNKDSKYFLEVKSVYEKYINLQQQFDSEKNKLLSKIDQ
LECQKAALKSENNFLKDAIKDGELKVTFLNNQVSEIQNSKVSIAQEQEKE
KDEYLQMIEHLNVENGELKKRCNSLKDDNTKFSNEIITKEHLIKEMSLEL
KAQKSLLSTKGSEISSLMQENLDVCNEKKMLEEKHGDICNELHCLKEKYH
NEMTEYGYTQNELTKMKNILDETKFELVAKTKDIFELEKTCNTLQCSNKQ
LNLQSEALSELLKLQDNVLSLSKTNKIGNAVVLWRQKVYQLLVLLKSKEM
DEF Run BLAST on NCBI transcript from alignment at scaffold_182:79735..81537 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050683 ID=TCONS_00050683|Name=TCONS_00050683|organism=Clytia hemisphaerica|type=transcript|length=1803bp|location=Sequence derived from alignment at scaffold_182:79735..81537 (Clytia hemisphaerica)
CTGatattaagaatatttcaattcaaaaaagGGTCTTAATTAGTACTCAT
AATGAGGATTgaagaacaataaaaatttaaatgtaatttaaagaacaata
aaaatttaaacgtaatttattaaatttaaaacatttataacaaaatatat
catttaCAAAGACCATTGGTGCAATtaaatttaacttaaaaaaaaaacaa
atttcagaATTCATCCATCTCCTTAGATTTCAACAATACCAAAAGCTGGT
AAACTTTCTGTCTCCACAAAACAACAGCATTTCCGATTTTGTTAGTTTTG
GATAGACTCAAAACGTTATCTTGTAGTTTCAACAGTTCAGATAAAGCTTC
AGACTGTAGGTTCAATTGTTTGTTAGAACATTGTAAGGTGTTACAGGTTT
TCTCTAgctcaaaaatatcttttgttttggcaacaagctcaaattttgtt
tcatcaaggatatttttcatttttgttaacTCGTTTTGTGTATATCCGTA
TTCTGTCATTTCGTtgtgatatttttctttcaaacaatGTAGTTCGTTAC
AAATGTCACCATGTTTCTCTTCAAGCATCTTCTTTTCATTGCACACATCT
AAATTTTCTTGCATTAAAGATGAAATCTCAGAACCCTTGGTAGAAAGAAG
AGATTTTTGTGCTTTAAGTTCTAATGACATCTCTTTAATCAAATGTTCTT
TTGTaataatttcatttgaaaattttgtattaTCATCCTTCAAGCTATTA
CATCGCTTTTTTAATTCTCCATTCTCTACATTCAAATGTTCAATCATTTG
GAGATattcatctttttctttttcttgctcCTGAGCAATAGAAACTTTGC
TGTTTTGGATTTCAGAGACTTGATTATTAAGGAAAGTCACTTTGAGTTCG
CCATCTTTAATTGCATCTTTCAAAAAGTTATTCTCAGATTTCAAAGCAGC
CTTTTGACATTCAAGTTGATCAATTTTAGATAGCAATTTATTCTTTTCAG
AATCGAATTGTTGCTGCAAATTAATATACTTCTCATAAACGGATTTGAct
tcaagaaaatattttgaatcttTATTATTGTGCTCTGACGACAGCATCTG
ACAATGCATTTTGGTTTCATCAAGTTTATTAGTCAGATCAGCAACTTCCT
GTTCTTTagcttttaattttgttttccatttttcttcGGATAACTTCCAA
TCAAGATCCTTATCTGTGATACTTTTCTGAAGTTTTCTGATTGATTCTTT
ATAAAACTGCTCATCAACATGTGACAACTGTTTgcttaaaattgaatttt
tagagACTTCTCTTTTCTCCAATGCAGGAGGTTCCACTACTTGtttattc
aaaactttctttgaaaTAGATTGCTTTGAAAGCAGAGGATTCACAGTAAA
ATCACTGGGTTTTTTCATTCGGGAGATAtcctgattttcaatttttgctc
gCTTGTCCAGTCCCAAGTTTAATTTGCTTGTAAAGTTTGTTgggtttttc
aataaaacactATCTTCACTGGCCTTTCCATTGAATTCTGCTGGTGTCTT
AAGATTGGAAGTCATTCTTTACAGTGTTTGTTTTTCTAGctagaataaaa
atatttcataacaAGCTTTACTTttataacctgataacagctggtcataa
ttttcttacgcgcacggtaaacctctgaatgCTTTTAAAGCAATAACCTG
ATTCTGATCAATTTTTTTAACTGGTCTGCATTATTATTAACTTCACAAAG
TCCTGGGGGGGATGTAGGGGCTacatttgaaactttttgtaggaaatgaa
gcc Coding sequence (CDS) from alignment at scaffold_182:79735..81537 >TCONS_00050683 ID=TCONS_00050683|Name=TCONS_00050683|organism=Clytia hemisphaerica|type=CDS|length=1362bp|location=Sequence derived from alignment at scaffold_182:79735..81537 (Clytia hemisphaerica)
tcagaATTCATCCATCTCCTTAGATTTCAACAATACCAAAAGCTGGTAAA
CTTTCTGTCTCCACAAAACAACAGCATTTCCGATTTTGTTAGTTTTGGAT
AGACTCAAAACGTTATCTTGTAGTTTCAACAGTTCAGATAAAGCTTCAGA
CTGTAGGTTCAATTGTTTGTTAGAACATTGTAAGGTGTTACAGGTTTTCT
CTAgctcaaaaatatcttttgttttggcaacaagctcaaattttgtttca
tcaaggatatttttcatttttgttaacTCGTTTTGTGTATATCCGTATTC
TGTCATTTCGTtgtgatatttttctttcaaacaatGTAGTTCGTTACAAA
TGTCACCATGTTTCTCTTCAAGCATCTTCTTTTCATTGCACACATCTAAA
TTTTCTTGCATTAAAGATGAAATCTCAGAACCCTTGGTAGAAAGAAGAGA
TTTTTGTGCTTTAAGTTCTAATGACATCTCTTTAATCAAATGTTCTTTTG
TaataatttcatttgaaaattttgtattaTCATCCTTCAAGCTATTACAT
CGCTTTTTTAATTCTCCATTCTCTACATTCAAATGTTCAATCATTTGGAG
ATattcatctttttctttttcttgctcCTGAGCAATAGAAACTTTGCTGT
TTTGGATTTCAGAGACTTGATTATTAAGGAAAGTCACTTTGAGTTCGCCA
TCTTTAATTGCATCTTTCAAAAAGTTATTCTCAGATTTCAAAGCAGCCTT
TTGACATTCAAGTTGATCAATTTTAGATAGCAATTTATTCTTTTCAGAAT
CGAATTGTTGCTGCAAATTAATATACTTCTCATAAACGGATTTGActtca
agaaaatattttgaatcttTATTATTGTGCTCTGACGACAGCATCTGACA
ATGCATTTTGGTTTCATCAAGTTTATTAGTCAGATCAGCAACTTCCTGTT
CTTTagcttttaattttgttttccatttttcttcGGATAACTTCCAATCA
AGATCCTTATCTGTGATACTTTTCTGAAGTTTTCTGATTGATTCTTTATA
AAACTGCTCATCAACATGTGACAACTGTTTgcttaaaattgaatttttag
agACTTCTCTTTTCTCCAATGCAGGAGGTTCCACTACTTGtttattcaaa
actttctttgaaaTAGATTGCTTTGAAAGCAGAGGATTCACAGTAAAATC
ACTGGGTTTTTTCATTCGGGAGATAtcctgattttcaatttttgctcgCT
TGTCCAGTCCCAAGTTTAATTTGCTTGTAAAGTTTGTTgggtttttcaat
aaaacactATCTTCACTGGCCTTTCCATTGAATTCTGCTGGTGTCTTAAG
ATTGGAAGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050683-exon-scaffold_182-1491911889:79735..81537 | TCONS_00050683-exon-scaffold_182-1491911889:79735..81537 | Clytia hemisphaerica | exon |
| TCONS_00050683-exon-scaffold_182-1510915933:79735..81537 | TCONS_00050683-exon-scaffold_182-1510915933:79735..81537 | Clytia hemisphaerica | exon |
| TCONS_00050683-exon-scaffold_182-1575043694:79735..81537 | TCONS_00050683-exon-scaffold_182-1575043694:79735..81537 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_182 | supercontig | scaffold_182:79735..81537 . |
Blast
The following BLAST results are available for this feature:
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