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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050694 ID=TCONS_00050694|Name=TCONS_00050694|organism=Clytia hemisphaerica|type=transcript|length=3787bpRun BLAST on NCBI protein sequence of TCONS_00050694-protein >TCONS_00050694-protein ID=TCONS_00050694-protein|Name=TCONS_00050694-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1088bp MEDEDSNLTVQISELSIQLQVAKETIAELESKLESRELELRSTKEKQNASRun BLAST on NCBI transcript from alignment at scaffold_183:52325..70434+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050694 ID=TCONS_00050694|Name=TCONS_00050694|organism=Clytia hemisphaerica|type=transcript|length=18110bp|location=Sequence derived from alignment at scaffold_183:52325..70434+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_183:52325..70434+ >TCONS_00050694 ID=TCONS_00050694|Name=TCONS_00050694|organism=Clytia hemisphaerica|type=CDS|length=45738bp|location=Sequence derived from alignment at scaffold_183:52325..70434+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050694 vs. Swiss-Prot (Human)
Match: ANR28 (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Homo sapiens GN=ANKRD28 PE=1 SV=5) HSP 1 Score: 132.88 bits (333), Expect = 3.989e-31 Identity = 195/737 (26.46%), Postives = 303/737 (41.11%), Query Frame = 2
Query: 1076 LHVAVDYGCQEIVKCLLERKISVNLQCGQYSFTPLHIASKHGNETMVRFLIEHGAELNIKDSYNET----AIEKTENFRMRHF--CLLLQDFSTACGFGDLHNVQRIFKEEPLCLD----------AKGYRHFTPLHVASFKGHFDIVNFLLQKGARVNEVDSQYCRTALHIATLYDQVEVIEILVTYGADHTLSDVFGYQAIHFCQSQKAVELLTKGQVSSPLNMAIQIGDHELAXXXXXXXXXXXXPDGNTRNTIPSNARRVSRQIAMSNLGLASIIDQKNERGMSPMHIAAASGKKDLLHLLKGYGGSIDLVGGISKWTPLFYAALSG-QFECVEFLLAMGANKEISDVRGLECTDLVENEISRLKLKLKTLVAEKPGDTLVENLQAIIPTQFLMIKEHPLLDTSSHLYIKH-RIQQLEKVLHSL------QSNQQKLLKVLENEDVEGLVELLHNE--QILIDERLSNIYPITALDYAASLGYDEIVQVLLDHNANPY----VMDSQSYSPLHNAADGGHVKVVRKLLHHGMDVNLQTSSQQFTALHLAALKGHENLVTVLLEHPDIDISLRDKN-----HCNA-----------FQLATSPKIQKLLARDQEH--LYLAVINQDSTKLEELLALPDMSVNATFKDELTLLHIVAERDSTNIAEMLNLTTIAKILIEKGVDINAKGGKDQHTALHAACKSSSRQIAELLLQCGADVTIKDRNGRTPFEVTTTN 3142
+H A G E+VK L+ V + + S+TPLH A+ G ++V++L++ G ++N ++Y T A ++ + C + + GF LH LCL+ K TPLH+ + G F ++Q GA + + + + T LHIA Y +I L+T GAD + G PL++A G + +++ PD R + + A + + L + ++K++ G SP+H AAA+ L L G G S++ + TPL YAA S +C+E+LL AN I D +G RL L+L + +E P D L+E T L ++ + HL H Q LE ++ SL S+ + L + + V++L N+ IL+ + + PI A AA+ G+ E +++L+ NA P + D +PL + GH V LL+ G +V+ + + TALH A+ GHE V LL+H LRD H +A Q A S A + + L+ A N T +E L L T + + LH D+ AEML T A I +NA K + T LHAA + + +LLL A V D G+TP + N
Sbjct: 177 IHWAAYMGHIEVVKLLVSHGAEVTCK-DKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGAIVNQKNEKGFTPLH-FAAASTHGALCLELLVGNGADVNMKSKDGKTPLHMTALHGRFSRSQTIIQSGAVI-DCEDKNGNTPLHIAARYGHELLINTLITSGADTAKRGIHGM---------------------FPLHLAALSGFSDCCRKLLSSGFDIDTPDDFGRTCLHAAAAGGNLECLNLLLNTGADFNKKDKFGRSPLHYAAANCNYQCLFALVGSGASVNDLDE-RGCTPLHYAATSDTDGKCLEYLLRNDANPGIRDKQGYNAVHYSAAYGHRLCLQL--IASETPLDVLMETSG----TDMLSDSDNRATISPLHLAAYHGHHQALEVLVQSLLDLDVRNSSGRTPLDLAAFKGHVECVDVLINQGASILVKDYILKRTPIHA---AATNGHSECLRLLIG-NAEPQNAVDIQDGNGQTPLMLSVLNGHTDCVYSLLNKGANVDAKDKWGR-TALHRGAVTGHEECVDALLQH-GAKCLLRDSRGRTPIHLSAACGHIGVLGALLQSAASMDANPATADNHGYTALHWACYNGHETCVE--LLLEQEVFQKTEGNAFSPLHCAVINDNEGAAEMLIDTLGASI-------VNATDSKGR-TPLHAAAFTDHVECLQLLLSHNAQVNSVDSTGKTPLMMAAEN 866 HSP 2 Score: 93.2041 bits (230), Expect = 6.626e-19 Identity = 96/351 (27.35%), Postives = 153/351 (43.59%), Query Frame = 2
Query: 1085 AVDYGCQEIVKCLLERKISVNLQCGQYSFTPLHIASKHGNETMVRFLIEHGAELNIKDSYNETAIEKTENFRMRHFCLLLQDFSTACGFGD------LH------NVQRIFKEEPLC--LDAKGYRHFTPLHVASFKGHFDIVNFLLQKGARVNEVDSQYCRTALHIATLYDQVEVIEILVTYGADHTLSDVFGYQAIHFCQSQKAVELLTKGQVSSPLNMAIQIGDHELAXXXXXXXXXXXXPDGNTRNTIPSNARRVSRQIAMSN--LGLASIIDQKNERGMSPMHIAAASGKKDL-LHLLKGYGGSIDLVGGISKWTPLFYAALSGQFECVEFLLAMGANKEISDVRG 2086
A+ G + V+ L+ +K VN Q + TPLH A+ G+ ++ LI GA +N KDS T + + +L S D LH V+ PL ++ T LH A+F GH ++V LL +GA +N D + R A+H A +EV+++LV++GA+ T D Y +H S + + V L++ + + + N P + + Q + N + +I++QKNE+G +P+H AAAS L L LL G G +++ K TPL AL G+F + ++ GA + D G
Sbjct: 15 AIFNGDPDEVRALIFKKEDVNFQDNEKR-TPLHAAAYLGDAEIIELLILSGARVNAKDSKWLTPLHRAVASCSEEAVQVLLKHSADVNARDKNWQTPLHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKD-RRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAASSGMISV-----VKYLLDLGVDMN------------------EPNAYGNTPLHVACYNGQDVVVNELIDCGAIVNQKNEKGFTPLHFAAASTHGALCLELLVGNGADVNMKSKDGK-TPLHMTALHGRFSRSQTIIQSGAVIDCEDKNG 339 The following BLAST results are available for this feature:
BLAST of TCONS_00050694 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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