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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050700 ID=TCONS_00050700|Name=TCONS_00050700|organism=Clytia hemisphaerica|type=transcript|length=4436bp
gaTTGGTttacgaatgatttcaaagatacttaagttgagccagtgcggtt
agcacgctCGACAGTGTTTATAATATCTGTAGCTTCCTTTTCCATGTTGt
catccgccatcttgttcACGCCGTCATCTTTATGTTGTATTTGTAGACCG
TAGTAGTACAGTAGTACGTGGCGAATGATTATAAATCAAGTTCTGTCGAC
GACAAGGATTTTTAGCTCTCAAGATCTTGTCACTGGATTCATCCTCGAAA
GTTTCGTCGTCGCTGGATTCAACGTTGCAGGTTTCCTCGTCACTGGATTC
GTCGTCACTGGATTCGTCCTCGAAGGTTTCATCGTCATTGGATTCAACGT
TGAAGGATTCGTCGTCACTAGATTAGTCGTCACTGGATTCGTTGCCGCTG
GATTCGTCCTCGAAGGTTTCTTCGTCGCTGGATTCAACGTTGAAGGTTTC
GTCGTCATTTGATTCGTTGTCGCTGGATTCGTCGTCGCTGGATTCGTCGT
CATTGGATTCAACGTTGAAGGATTCGTCGTCACTAGATTCTTCCTCACTG
GATTCGTCCTCGAAGGTTTCGTCGTCATTGGATTCGTCCTCGAGGGTTTC
GTCGTCGCTGGATTCAACGTTGAAGGATTCGTCGTCGCAGGATTCGTCGT
CACTGGATTCGTCGTCACTGGATTCGTCGTCACTGGATTCGTCGTCGCTA
GATTCGTCGTCACTGGATTCGTCGTCGCTGGATTCGTCGTCGCTGGATTC
ATCCTCGAAGGTTTCTTCGTCGCTGGATTCAACGTTGAAGGATTCGTCGT
CACTAGATTCTTCCTCACTGGATTCGTCCTCGAAGGTTTCGTCGTCATTG
GATTCGTCCTCGAAGGTTTCGTCATCGCTGGATTCAACGTTGGAGGATTC
GTCGTCACTGGATTCGTCGTCACTGGATTCGTCGTCAATGGATTTGTCGT
CACTGGATTCGTCGTCACTGGATTCGTCGTCACTGGATTCGTCGTCGCTT
GATTCATCCTCGAAGGTTTCTTCGTCGCTGGATTCAACGTTGAAGGATTC
GTCGTCACTAGATTCTTCCTCACCGGATTCGTCCTCGAAGGTTTAGTCGT
CATTGGATTCGTCCTCGAAGGTTTCGTCGTCGCTGGATTCAACGTTGAAG
GATTCGTCGTCGCTGGATTCGTCGTCACTGGATTCGTCGTCATTGGATTC
AACGTTGAAGGATTCGTCGTCACTAGATTCTTCCTCACTGGATTCGTCCT
CGAAGGTTTCGTCGTCGCTGGATTCAACGTTGAAGGTTTCCTCGTCATTT
GATTCGTCGTCGCTGGATTCGCCGTTATTGGATTCAACGTTGAAGGATTC
GTCGTCGCTGGATTCGTTGTCACTAGATTCGTCGTCACTGGATTCGTCCT
CGAAGGTTTCGTCGTCATTGGATTCAACGTCGCTGGATTCGTCCTCGAAA
GTTTCGTCCTCGAAAGTTTCGTCCTCGAAAGTTTCGTCCTCGCTGGATTC
GACCTCGAAGGTTTCGTCGTCACTGGATTCGTCCTCGAAGGTTTCGTCGT
TGCTGGATTCAACGTTGAAGGATTCGTCGTCGCTGGATTCGTCGTCGCTG
GATTCGTCGTCACTAGATTCGTCGTCGCTGTATTCGTCGTCATTGGATTC
GTCCTCGAAGGTTTCGTCGTCgcaaatatctttaatggtcggaaatatca
tagcgtaatggtcggaaatatcatttgatgatcggaaatatcttttaatG
TTCGGAAGtatccaaaactctgaaaatttgaaaatttaatggtcgggaAT
ATACCGCGCTTTCAAAAAtgcttcatcagcaaaaaaatgtaaacaaagat
aATAGCCAAGGTGGTGTAGTGTGgccaacttgttgtgtgtgccagacaag
agtagtttttttattttaagtttttgggacaCTATCTGAGAACTGTTCTG
TTTCTTGGAGGGGGGCACTTAAGGTAAATGACCTGAGGCGTGGCACGTAA
GTAAGGGTCGTTTTTTCGAGGTTATGGCGGGCggaactacactgtaaggg
acgacaggagaaaaaaatgagaaaaatacaCTGTAAGCGTGTAAAAATTG
AGGATTTGGGccaaattgaagatttttttccctGTAAAGGATAGAAAATT
TTGCCATAAATGTTCTGTAAGGGccattttttggcaaaattttctctgca
tgcactgccagctggatgcactgtaagggttcgattttggaagccaaatt
ttccgccgaaagtatggtcgttttcagatcgagtgcccccccccctgccc
CGGGTAAGGTCTAGAATGGGAGGGTGTCCAGGTAAGGACTAGATTTAGGG
TGATTTGAAAGCAGTGGGGGCTAGAGGAGGAAAGgataaaaaagacaaga
aagaaagaagagtcgtggttgaataaaaaggtcaataccactTTCTCTCC
CTAAAAAGCTGTCTACGTCTTGTGTAAAATACTATATAAAGAACTACGAA
ACAGAACCACAtttgctaccatctttgtttacatttttttgctgatgagg
tatttttaaaagcgcgggatatttccgaccatcaaatgatatttccgacc
attaaattttcaaattttcagagttttagatatttccgaccatcaaaaga
tatttccgactatcaaatgatatttccgaccattacgctatgatatttcc
gaccattaaagatgtttccgcccgtctacggaaaaaaaatttgcttcgTC
GTCATTGGATTCAACGTTGAAGGGTTCGTCGTCATTGGATTCGACGTTGA
AGGTTTCGTCGTCACTGGATTCGTTCTCGAACGATTCGTCGTCACTAAAC
ATATGATAGATATCTTCCAAGTCCCTGCTTCAATGTTGAGTTTGGAGAGT
AATCCCGTCCACAGGACTAATGCGGTATAGTCTCTCCATTTTGATTTGTA
GAATTTTTGTGAAGAGGAAAGTCATCCACCCACCTCTTATTCTCTTCGCG
TTACGTATGATCTCATTGCCAGTCACTTAAACATGGTATTTGTGGATTGG
TTGAAGTTTTCTGAATTTATAAacgtatttttcaataaaagaatAACTTA
ATGCATCATGCGAAAAAAAGCTGCATTTCAATAACTAGAGTTTCAGTGAA
CACTGTTCTAGGCTAACACCTCCCCCTCCCCAGCAGTTTGCGTGAATCTT
GAGAAAGATTTGCGTGAATGagtgaatttcgaaaagaaatacgtgaattg
agggtccgctgggggtcTCAAAAGGAGCTGAACTGTATGGCATCAAAAGT
TAATTGCTTTCCATACAACTTGGAAAATACCTTAAGCTACTATTTTAAAC
AGCATGCAAAGGttaaaaaaagaatatctttgcAAATCACCTACCAGGTG
CTGGGAAGACTTGGAACCTGCGCTCCCTGTCCAAAAGCAAGATCCTCCTG
TCTTCACTACTGATGTAGAGCATAACTTCTTGCTCCTCCATCCACTGTGA
CATCGAATTCCTCTTTCTAGatattttgtgttttatttGTTTGTACGCGT
CAAAGTCGTCGTCTGAGTCGGTGCTTGTTTCGGTGCGTTCTTCtgttttc
gttttgtttttgttgcctTTGGTGTCTTCTTTTGGGATATTGTTATGGTC
TTCTTTTGGGATATTGTTATGGTCTTCTTTTGCGATATTCTTATGGTCTT
CTTTTGCGATATTCTTATAATCTTCTTTCGGGAAGGACCAGAAGTAAATT
TACACCATTAAGACATAATTTGCTATCCTATTATCCCGTTATTAAAATAG
ATATTACATTACGTTACCTCCGTACAATGTATTATGCATCATATTATATA
TCAGTCCTCTATATCCtcgctgtcctctctatcctcgctgtcctctctat
cctcgctgtcctctctatcctcgcTGTCCTCattatcctctccatcctca
ctatcctcacaatcctcactgtcctcattatcctctctatcctctccatc
ctcaccatcctcactgtcctcagatttgtgtatttttgaatagaaaatag
catgtAGCAGATGCACGAATCCTATTAAATAGACTAATGCTGAGTGTCTG
ACGGTCCTAATTGGTGTAGCCAAAGGCGTAATAAGGCCAACTTTAGACTA
GTGACGTACAAAGACTGGTAGTGTTACTTACCCTTACTGGTTCGACGATA
GGTATTGTTGGATCCTGGTTGGCAGTTTCAATCAGTGCTTAGAGATAATC
AGGAAGATAATTCCCTTTAGATTGGTAGTATTCCCTGGTGAAGAGATTCT
CCTTGTAGGATATAACGCATTCACGATGTCAGATTGCTTGGAGACCTTTT
TCATACTAATGAACGTAGTGTACCTACAAAAGGACAATACGAACACGTCA
AGACTAAAACTTTAACTTACAACTAGTAATTCACCT Run BLAST on NCBI protein sequence of TCONS_00050700-protein >TCONS_00050700-protein ID=TCONS_00050700-protein|Name=TCONS_00050700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
MTTNTATTNLVTTNPATTNPATTNPSTLNPATTKPSRTNPVTTKPSRSNP
ARTKLSRTKLSRTKLSRTNPATLNPMTTKPSRTNPVTTNLVTTNPATTNP
STLNPITANPATTNQMTRKPSTLNPATTKPSRTNPVRKNLVTTNPSTLNP
MTTNPVTTNPATTNPSTLNPATTKPSRTNPMTTKPSRTNPVRKNLVTTNP
STLNPATKKPSRMNQATTNPVTTNPVTTNPVTTNPLTTNPVTTNPVTTNP
PTLNPAMTKPSRTNPMTTKPSRTNPVRKNLVTTNPSTLNPATKKPSRMNP
ATTNPATTNPVTTNLATTNPVTTNPVTTNPVTTNPATTNPSTLNPATTKP
SRTNPMTTKPSRTNPVRKNLVTTNPSTLNPMTTNPATTNPATTNQMTTKP
STLNPATKKPSRTNPAATNPVTTNLVTTNPSTLNPMTMKPSRTNPVTTNP
VTRKPATLNPATTKLSRMNPVTRS Run BLAST on NCBI transcript from alignment at scaffold_183:24587..29022 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050700 ID=TCONS_00050700|Name=TCONS_00050700|organism=Clytia hemisphaerica|type=transcript|length=4436bp|location=Sequence derived from alignment at scaffold_183:24587..29022 (Clytia hemisphaerica)
AGGTGAATTACTAGTTGTAAGTTAAAGTTTTAGTCTTGACGTGTTCGTAT
TGTCCTTTTGTAGGTACACTACGTTCATTAGTATGAAAAAGGTCTCCAAG
CAATCTGACATCGTGAATGCGTTATATCCTACAAGGAGAATCTCTTCACC
AGGGAATACTACCAATCTAAAGGGAATTATCTTCCTGATTATCTCTAAGC
ACTGATTGAAACTGCCAACCAGGATCCAACAATACCTATCGTCGAACCAG
TAAGGGTAAGTAACACTACCAGTCTTTGTACGTCACTAGTCTAAAGTTGG
CCTTATTACGCCTTTGGCTACACCAATTAGGACCGTCAGACACTCAGCAT
TAGTCTATTTAATAGGATTCGTGCATCTGCTacatgctattttctattca
aaaatacacaaatctgaggacagtgaggatggtgaggatggagaggatag
agaggataatgaggacagtgaggattgtgaggatagtgaggatggagagg
ataatGAGGACAgcgaggatagagaggacagcgaggatagagaggacagc
gaggatagagaggacagcgaGGATATAGAGGACTGATATATAATATGATG
CATAATACATTGTACGGAGGTAACGTAATGTAATATCTATTTTAATAACG
GGATAATAGGATAGCAAATTATGTCTTAATGGTGTAAATTTACTTCTGGT
CCTTCCCGAAAGAAGATTATAAGAATATCGCAAAAGAAGACCATAAGAAT
ATCGCAAAAGAAGACCATAACAATATCCCAAAAGAAGACCATAACAATAT
CCCAAAAGAAGACACCAAaggcaacaaaaacaaaacgaaaacaGAAGAAC
GCACCGAAACAAGCACCGACTCAGACGACGACTTTGACGCGTACAAACaa
ataaaacacaaaatatCTAGAAAGAGGAATTCGATGTCACAGTGGATGGA
GGAGCAAGAAGTTATGCTCTACATCAGTAGTGAAGACAGGAGGATCTTGC
TTTTGGACAGGGAGCGCAGGTTCCAAGTCTTCCCAGCACCTGGTAGGTGA
TTTgcaaagatattctttttttaaCCTTTGCATGCTGTTTAAAATAGTAG
CTTAAGGTATTTTCCAAGTTGTATGGAAAGCAATTAACTTTTGATGCCAT
ACAGTTCAGCTCCTTTTGAgacccccagcggaccctcaattcacgtattt
cttttcgaaattcactCATTCACGCAAATCTTTCTCAAGATTCACGCAAA
CTGCTGGGGAGGGGGAGGTGTTAGCCTAGAACAGTGTTCACTGAAACTCT
AGTTATTGAAATGCAGCTTTTTTTCGCATGATGCATTAAGTTattctttt
attgaaaaatacgtTTATAAATTCAGAAAACTTCAACCAATCCACAAATA
CCATGTTTAAGTGACTGGCAATGAGATCATACGTAACGCGAAGAGAATAA
GAGGTGGGTGGATGACTTTCCTCTTCACAAAAATTCTACAAATCAAAATG
GAGAGACTATACCGCATTAGTCCTGTGGACGGGATTACTCTCCAAACTCA
ACATTGAAGCAGGGACTTGGAAGATATCTATCATATGTTTAGTGACGACG
AATCGTTCGAGAACGAATCCAGTGACGACGAAACCTTCAACGTCGAATCC
AATGACGACGAACCCTTCAACGTTGAATCCAATGACGAcgaagcaaattt
tttttccgtagacgggcggaaacatctttaatggtcggaaatatcatagc
gtaatggtcggaaatatcatttgatagtcggaaatatcttttgatggtcg
gaaatatctaaaactctgaaaatttgaaaatttaatggtcggaaatatca
tttgatggtcggaaatatcccgcgcttttaaaaatacctcatcagcaaaa
aaatgtaaacaaagatggtagcaaaTGTGGTTCTGTTTCGTAGTTCTTTA
TATAGTATTTTACACAAGACGTAGACAGCTTTTTAGGGAGAGAAagtggt
attgacctttttattcaaccacgactcttctttctttcttgtctttttta
tcCTTTCCTCCTCTAGCCCCCACTGCTTTCAAATCACCCTAAATCTAGTC
CTTACCTGGACACCCTCCCATTCTAGACCTTACCCGgggcaggggggggg
gcactcgatctgaaaacgaccatactttcggcggaaaatttggcttccaa
aatcgaacccttacagtgcatccagctggcagtgcatgcagagaaaattt
tgccaaaaaatggCCCTTACAGAACATTTATGGCAAAATTTTCTATCCTT
TACagggaaaaaaatcttcaatttggCCCAAATCCTCAATTTTTACACGC
TTACAGtgtatttttctcatttttttctcctgtcgtcccttacagtgtag
ttccGCCCGCCATAACCTCGAAAAAACGACCCTTACTTACGTGCCACGCC
TCAGGTCATTTACCTTAAGTGCCCCCCTCCAAGAAACAGAACAGTTCTCA
GATAGtgtcccaaaaacttaaaataaaaaaactactcttgtctggcacac
acaacaagttggcCACACTACACCACCTTGGCTATtatctttgtttacat
ttttttgctgatgaagcaTTTTTGAAAGCGCGGTATATtcccgaccatta
aattttcaaattttcagagttttggataCTTCCGAACattaaaagatatt
tccgatcatcaaatgatatttccgaccattacgctatgatatttccgacc
attaaagatatttgcGACGACGAAACCTTCGAGGACGAATCCAATGACGA
CGAATACAGCGACGACGAATCTAGTGACGACGAATCCAGCGACGACGAAT
CCAGCGACGACGAATCCTTCAACGTTGAATCCAGCAACGACGAAACCTTC
GAGGACGAATCCAGTGACGACGAAACCTTCGAGGTCGAATCCAGCGAGGA
CGAAACTTTCGAGGACGAAACTTTCGAGGACGAAACTTTCGAGGACGAAT
CCAGCGACGTTGAATCCAATGACGACGAAACCTTCGAGGACGAATCCAGT
GACGACGAATCTAGTGACAACGAATCCAGCGACGACGAATCCTTCAACGT
TGAATCCAATAACGGCGAATCCAGCGACGACGAATCAAATGACGAGGAAA
CCTTCAACGTTGAATCCAGCGACGACGAAACCTTCGAGGACGAATCCAGT
GAGGAAGAATCTAGTGACGACGAATCCTTCAACGTTGAATCCAATGACGA
CGAATCCAGTGACGACGAATCCAGCGACGACGAATCCTTCAACGTTGAAT
CCAGCGACGACGAAACCTTCGAGGACGAATCCAATGACGACTAAACCTTC
GAGGACGAATCCGGTGAGGAAGAATCTAGTGACGACGAATCCTTCAACGT
TGAATCCAGCGACGAAGAAACCTTCGAGGATGAATCAAGCGACGACGAAT
CCAGTGACGACGAATCCAGTGACGACGAATCCAGTGACGACAAATCCATT
GACGACGAATCCAGTGACGACGAATCCAGTGACGACGAATCCTCCAACGT
TGAATCCAGCGATGACGAAACCTTCGAGGACGAATCCAATGACGACGAAA
CCTTCGAGGACGAATCCAGTGAGGAAGAATCTAGTGACGACGAATCCTTC
AACGTTGAATCCAGCGACGAAGAAACCTTCGAGGATGAATCCAGCGACGA
CGAATCCAGCGACGACGAATCCAGTGACGACGAATCTAGCGACGACGAAT
CCAGTGACGACGAATCCAGTGACGACGAATCCAGTGACGACGAATCCTGC
GACGACGAATCCTTCAACGTTGAATCCAGCGACGACGAAACCCTCGAGGA
CGAATCCAATGACGACGAAACCTTCGAGGACGAATCCAGTGAGGAAGAAT
CTAGTGACGACGAATCCTTCAACGTTGAATCCAATGACGACGAATCCAGC
GACGACGAATCCAGCGACAACGAATCAAATGACGACGAAACCTTCAACGT
TGAATCCAGCGACGAAGAAACCTTCGAGGACGAATCCAGCGGCAACGAAT
CCAGTGACGACTAATCTAGTGACGACGAATCCTTCAACGTTGAATCCAAT
GACGATGAAACCTTCGAGGACGAATCCAGTGACGACGAATCCAGTGACGA
GGAAACCTGCAACGTTGAATCCAGCGACGACGAAACTTTCGAGGATGAAT
CCAGTGACAAGATCTTGAGAGCTAAAAATCCTTGTCGTCGACAGAACTTG
ATTTATAATCATTCGCCACGTACTACTGTACTACTACGGTCTACAAATAC
AACATAAAGATGACGGCGTgaacaagatggcggatgaCAACATGGAAAAG
GAAGCTACAGATATTATAAACACTGTCGagcgtgctaaccgcactggctc
aacttaagtatctttgaaatcattcgtaaACCAAtc Coding sequence (CDS) from alignment at scaffold_183:24587..29022 >TCONS_00050700 ID=TCONS_00050700|Name=TCONS_00050700|organism=Clytia hemisphaerica|type=CDS|length=1425bp|location=Sequence derived from alignment at scaffold_183:24587..29022 (Clytia hemisphaerica)
ATGACGACGAATACAGCGACGACGAATCTAGTGACGACGAATCCAGCGAC
GACGAATCCAGCGACGACGAATCCTTCAACGTTGAATCCAGCAACGACGA
AACCTTCGAGGACGAATCCAGTGACGACGAAACCTTCGAGGTCGAATCCA
GCGAGGACGAAACTTTCGAGGACGAAACTTTCGAGGACGAAACTTTCGAG
GACGAATCCAGCGACGTTGAATCCAATGACGACGAAACCTTCGAGGACGA
ATCCAGTGACGACGAATCTAGTGACAACGAATCCAGCGACGACGAATCCT
TCAACGTTGAATCCAATAACGGCGAATCCAGCGACGACGAATCAAATGAC
GAGGAAACCTTCAACGTTGAATCCAGCGACGACGAAACCTTCGAGGACGA
ATCCAGTGAGGAAGAATCTAGTGACGACGAATCCTTCAACGTTGAATCCA
ATGACGACGAATCCAGTGACGACGAATCCAGCGACGACGAATCCTTCAAC
GTTGAATCCAGCGACGACGAAACCTTCGAGGACGAATCCAATGACGACTA
AACCTTCGAGGACGAATCCGGTGAGGAAGAATCTAGTGACGACGAATCCT
TCAACGTTGAATCCAGCGACGAAGAAACCTTCGAGGATGAATCAAGCGAC
GACGAATCCAGTGACGACGAATCCAGTGACGACGAATCCAGTGACGACAA
ATCCATTGACGACGAATCCAGTGACGACGAATCCAGTGACGACGAATCCT
CCAACGTTGAATCCAGCGATGACGAAACCTTCGAGGACGAATCCAATGAC
GACGAAACCTTCGAGGACGAATCCAGTGAGGAAGAATCTAGTGACGACGA
ATCCTTCAACGTTGAATCCAGCGACGAAGAAACCTTCGAGGATGAATCCA
GCGACGACGAATCCAGCGACGACGAATCCAGTGACGACGAATCTAGCGAC
GACGAATCCAGTGACGACGAATCCAGTGACGACGAATCCAGTGACGACGA
ATCCTGCGACGACGAATCCTTCAACGTTGAATCCAGCGACGACGAAACCC
TCGAGGACGAATCCAATGACGACGAAACCTTCGAGGACGAATCCAGTGAG
GAAGAATCTAGTGACGACGAATCCTTCAACGTTGAATCCAATGACGACGA
ATCCAGCGACGACGAATCCAGCGACAACGAATCAAATGACGACGAAACCT
TCAACGTTGAATCCAGCGACGAAGAAACCTTCGAGGACGAATCCAGCGGC
AACGAATCCAGTGACGACTAATCTAGTGACGACGAATCCTTCAACGTTGA
ATCCAATGACGATGAAACCTTCGAGGACGAATCCAGTGACGACGAATCCA
GTGACGAGGAAACCTGCAACGTTGAATCCAGCGACGACGAAACTTTCGAG
GATGAATCCAGTGACAAGATCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050700-exon-scaffold_183-1491911889:24587..29022 | TCONS_00050700-exon-scaffold_183-1491911889:24587..29022 | Clytia hemisphaerica | exon |
| TCONS_00050700-exon-scaffold_183-1510915933:24587..29022 | TCONS_00050700-exon-scaffold_183-1510915933:24587..29022 | Clytia hemisphaerica | exon |
| TCONS_00050700-exon-scaffold_183-1575043694:24587..29022 | TCONS_00050700-exon-scaffold_183-1575043694:24587..29022 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_183 | supercontig | scaffold_183:24587..29022 . |
Blast
The following BLAST results are available for this feature:
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