|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050702 ID=TCONS_00050702|Name=TCONS_00050702|organism=Clytia hemisphaerica|type=transcript|length=1533bp
caaaaatgttcagatttggctgaaatttggcacaattgttccttgggtga
atatctgggggtgttttttcattttttgaaaatttcaatttttaagggtg
tggtcacgagttttcgcctcaaaacgaggctaaaaacttGTGGGCAGCct
ggaggcttcaaaaatgatcggatttggctgaaatttagcattccttgggt
gaatatctcggtgtacatttttcatttttttgaaaatatttcttggtggg
gcctggggacgagtttttagcctaaacgaggctaaaacctatTAATTATC
TGATCTGTGGAGAAGTATGTGATATATGTAAAGCAATAGCAGAGAGTTTT
GTGTATGTTGTCCGAAATAGCTAATCTAGAAATGAATTTGAAGACAAGGC
TACAATCACTTAGTCTATTGTCCGAAATGTCGATCCTGTTTTGCCTAAGA
AGTGGATCAGAGAATAATAGAGACAAAGTATGTATAGAGTCGAAATGTTT
ATTAATCAAGTAAATGTAATCAAGTAAATGTAATCAAGTAAATGTAAGCA
AGTAAATGTAATCAAGGTAGAATAAAACGCGAGGTAATTGCATTGGGGTA
ACATTGGGGATGTGCTGCGTACCTTCTTCTAAAGAGATGATAAGCCTGTC
CACTGTCGGGCTGAGCAGCCAGGACAAGGCACTAGAAATGTAGGAGGCCC
TAAGGTTACCGAAGGTAAGCCAACACCCCTAATTACTATATAATGTAAAA
TAGAAATAAGTTATGTGTAAGTAACCTAAATCACTGTGGATAGCGTCCAA
GCCAGTGTGTGGAATCTAAATTACTGTGGATAGCGTCCGAGCCAGTGTGT
GAGTGTTTGAGAATGTGCGGATCGCATCCGAGCATATATCTGAGGTATGA
ATTTACTGTGGATAGCGTCCAAGCCAGTGTTTGAGTGTTTGAGAATGTGC
GGATCGCATCCGAGCATATATCTGAAGTACAAATTTACTGTGGATAGCGT
CCAAGCCAGTGTGTGAGTGTTTGAGCATGTGCGGATCGCATCCGAGCATT
TATCTGAGATATGTATTTACTGTGGATAGCGTCCGAGCCAGTGTAGAAAA
ATCTGATAAAACTGTTGGTAGCGACCAAGCCAGTGTAGAATTGACTTAAA
GAGCTGTGGATAGCGTCCAAGCCAACGTGAATGGTTACGGCAATAAAGTT
TGTTAAAATGGGCAGATTCAGAGTTGAAGCCACCGATTAGTAAGTACCCA
GCACATCCCAAATGGTTGGTCCTTGGGTTAAAAAACCTGGCACCAGGAAA
AACTCTAGGACCGAAAGACCGCGGGGTTGCAAGCAGGCGTTGGCATCATC
TGGTGGTGTTTcctaaaaatagaaaagaaaagcaaaagcAAACAACGAAG
GATAAGAAAAAGCAACTGTTGGGTGGGTGGGAGGTAAATTCATTCTCAAT
CTGATCAGGCAGTAGAAAAGGTAGGAAATAGGAGTGAGATCAATTTAAGG
AGATCTAGCAGGCGGGACTAGCTGAAGATAAAT Run BLAST on NCBI transcript from alignment at scaffold_183:36223..37755 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050702 ID=TCONS_00050702|Name=TCONS_00050702|organism=Clytia hemisphaerica|type=transcript|length=1533bp|location=Sequence derived from alignment at scaffold_183:36223..37755 (Clytia hemisphaerica)
ATTTATCTTCAGCTAGTCCCGCCTGCTAGATCTCCTTAAATTGATCTCAC
TCCTATTTCCTACCTTTTCTACTGCCTGATCAGATTGAGAATGAATTTAC
CTCCCACCCACCCAACAGTTGCTTTTTCTTATCCTTCGTTGTTTgctttt
gcttttcttttctatttttaggAAACACCACCAGATGATGCCAACGCCTG
CTTGCAACCCCGCGGTCTTTCGGTCCTAGAGTTTTTCCTGGTGCCAGGTT
TTTTAACCCAAGGACCAACCATTTGGGATGTGCTGGGTACTTACTAATCG
GTGGCTTCAACTCTGAATCTGCCCATTTTAACAAACTTTATTGCCGTAAC
CATTCACGTTGGCTTGGACGCTATCCACAGCTCTTTAAGTCAATTCTACA
CTGGCTTGGTCGCTACCAACAGTTTTATCAGATTTTTCTACACTGGCTCG
GACGCTATCCACAGTAAATACATATCTCAGATAAATGCTCGGATGCGATC
CGCACATGCTCAAACACTCACACACTGGCTTGGACGCTATCCACAGTAAA
TTTGTACTTCAGATATATGCTCGGATGCGATCCGCACATTCTCAAACACT
CAAACACTGGCTTGGACGCTATCCACAGTAAATTCATACCTCAGATATAT
GCTCGGATGCGATCCGCACATTCTCAAACACTCACACACTGGCTCGGACG
CTATCCACAGTAATTTAGATTCCACACACTGGCTTGGACGCTATCCACAG
TGATTTAGGTTACTTACACATAACTTATTTCTATTTTACATTATATAGTA
ATTAGGGGTGTTGGCTTACCTTCGGTAACCTTAGGGCCTCCTACATTTCT
AGTGCCTTGTCCTGGCTGCTCAGCCCGACAGTGGACAGGCTTATCATCTC
TTTAGAAGAAGGTACGCAGCACATCCCCAATGTTACCCCAATGCAATTAC
CTCGCGTTTTATTCTACCTTGATTACATTTACTTGCTTACATTTACTTGA
TTACATTTACTTGATTACATTTACTTGATTAATAAACATTTCGACTCTAT
ACATACTTTGTCTCTATTATTCTCTGATCCACTTCTTAGGCAAAACAGGA
TCGACATTTCGGACAATAGACTAAGTGATTGTAGCCTTGTCTTCAAATTC
ATTTCTAGATTAGCTATTTCGGACAACATACACAAAACTCTCTGCTATTG
CTTTACATATATCACATACTTCTCCACAGATCAGATAATTAataggtttt
agcctcgtttaggctaaaaactcgtccccaggccccaccaagaaatattt
tcaaaaaaatgaaaaatgtacaccgagatattcacccaaggaatgctaaa
tttcagccaaatccgatcatttttgaagcctccagGCTGCCCACaagttt
ttagcctcgttttgaggcgaaaactcgtgaccacacccttaaaaattgaa
attttcaaaaaatgaaaaaacacccccagatattcacccaaggaacaatt
gtgccaaatttcagccaaatctgaacatttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050702-exon-scaffold_183-1491911889:36223..37755 | TCONS_00050702-exon-scaffold_183-1491911889:36223..37755 | Clytia hemisphaerica | exon |
| TCONS_00050702-exon-scaffold_183-1510915933:36223..37755 | TCONS_00050702-exon-scaffold_183-1510915933:36223..37755 | Clytia hemisphaerica | exon |
| TCONS_00050702-exon-scaffold_183-1575043694:36223..37755 | TCONS_00050702-exon-scaffold_183-1575043694:36223..37755 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_183 | supercontig | scaffold_183:36223..37755 . |
Blast
The following BLAST results are available for this feature:
|
