TCONS_00050703 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050703
Unique NameTCONS_00050703
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length810

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050703 ID=TCONS_00050703|Name=TCONS_00050703|organism=Clytia hemisphaerica|type=transcript|length=810bp
GGCCAATTAATCGGTTCTTCTTAGACTAACTTTTAgatcaattttgtttt
ttcaactgtttccaaattattttgaatAGACACGAAGTGCCACTTTCTTC
TTAGGACTTCCTGTCGCTTAGAGTTTTGGTTCCTCATTGCCGAAATGACC
TTAGTTCCCAAAATAAGCAAACTTTTCGTGGTTTTGTACGGATCTTCTAA
CTTCAGATCAAAACCACTGAGGAAGGTTATTCGTCGCATCGGCGACGTCC
ATTTCTTCATCTCTTCGCAGTCAATTTTCACCTTTCCTGGGATTCGGGAA
ACAGAGTCAAGTTATTGGCAATGTTTTGTTTAAAATGTTAAATCgtgaaa
atgcaaaaattctTTGTGTTTATATACTCAAAAGCATTTTTGTTGAATTC
CATAAACTTGCGTACAATTAATGTTTCTATGAtgtgataaaaatgaaaac
aattaaaaagttTTACGTAACGAGGGAAATGTAAaggtcaaaggacaaat
gtaaCGAATAAGGCCCTGAAGAATAAGGAGGAGAGACCAAGGACTCAAAA
GGCTATAGAAGTTCCACAGATAAGTAGCACAATTGTAGTACTTTTAGAAT
ATAGTTCAATATGAAGCTAAATCCAATTTCGGCCACTTCAAGTAATCATC
AGAaagcttttcatttttcaaaagtcaaacaaGGTCACACAAACTTGAAC
TTCCTTAACCGTTTATCATACTTAATAGCCAAAGCCCTTCTTCTGCTCTG
ACAACAAGCATAACATTTGTACCAGTTACTAGCATACTCCATACAGATAT
ATAATCCCAT
Run BLAST on NCBI

transcript from alignment at scaffold_183:38698..39507

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050703 ID=TCONS_00050703|Name=TCONS_00050703|organism=Clytia hemisphaerica|type=transcript|length=810bp|location=Sequence derived from alignment at scaffold_183:38698..39507 (Clytia hemisphaerica)
ATGGGATTATATATCTGTATGGAGTATGCTAGTAACTGGTACAAATGTTA
TGCTTGTTGTCAGAGCAGAAGAAGGGCTTTGGCTATTAAGTATGATAAAC
GGTTAAGGAAGTTCAAGTTTGTGTGACCttgtttgacttttgaaaaatga
aaagcttTCTGATGATTACTTGAAGTGGCCGAAATTGGATTTAGCTTCAT
ATTGAACTATATTCTAAAAGTACTACAATTGTGCTACTTATCTGTGGAAC
TTCTATAGCCTTTTGAGTCCTTGGTCTCTCCTCCTTATTCTTCAGGGCCT
TATTCGttacatttgtcctttgacctTTACATTTCCCTCGTTACGTAAaa
ctttttaattgttttcatttttatcacaTCATAGAAACATTAATTGTACG
CAAGTTTATGGAATTCAACAAAAATGCTTTTGAGTATATAAACACAAaga
atttttgcattttcacGATTTAACATTTTAAACAAAACATTGCCAATAAC
TTGACTCTGTTTCCCGAATCCCAGGAAAGGTGAAAATTGACTGCGAAGAG
ATGAAGAAATGGACGTCGCCGATGCGACGAATAACCTTCCTCAGTGGTTT
TGATCTGAAGTTAGAAGATCCGTACAAAACCACGAAAAGTTTGCTTATTT
TGGGAACTAAGGTCATTTCGGCAATGAGGAACCAAAACTCTAAGCGACAG
GAAGTCCTAAGAAGAAAGTGGCACTTCGTGTCTattcaaaataatttgga
aacagttgaaaaaacaaaattgatcTAAAAGTTAGTCTAAGAAGAACCGA
TTAATTGGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032127XLOC_032127Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050703-exon-scaffold_183-1491911889:38698..39507TCONS_00050703-exon-scaffold_183-1491911889:38698..39507Clytia hemisphaericaexon
TCONS_00050703-exon-scaffold_183-1510915933:38698..39507TCONS_00050703-exon-scaffold_183-1510915933:38698..39507Clytia hemisphaericaexon
TCONS_00050703-exon-scaffold_183-1575043694:38698..39507TCONS_00050703-exon-scaffold_183-1575043694:38698..39507Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_183supercontigscaffold_183:38698..39507 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.200514	0.0653907	0.318427	0.188719	0	0	0	0	0	0.0393144	0.196299	0	0	0	0	0.0454209	0	0.0656649	0	0.0835171	0	0	0.126758	0.169693	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050703 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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