TCONS_00050704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050704
Unique NameTCONS_00050704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050704 ID=TCONS_00050704|Name=TCONS_00050704|organism=Clytia hemisphaerica|type=transcript|length=387bp
CTTTTAAAAATCGAGGAATGAtctctcaaaatttcatcaagcCTTAACAT
TTTCTACCATCTTTcaacaatgtttaaaaaaaaacattgttagGCTCTTT
TTTAAACTGCGCACACTTTATAGTTTGTTTTAGTTCGAACATGGTTCAAG
AGAATTAGGATTGAGGGTGTCTTTCCAATAATTTTATTCCTTATGTATCA
ATGCACACTGAGATTAATTATACCTGCAGTGTTTAGATTGCATAAACTGT
GCATAACGTTTATAGAGAgtaaaatttactaaaatagacatctttaaatt
tatttaaaaacagccaagaacataatataaaaatttaatgtaattttcta
aaatatatcataaaatatttaaaaattctaatcGGAA
Run BLAST on NCBI

transcript from alignment at scaffold_183:39700..40086

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050704 ID=TCONS_00050704|Name=TCONS_00050704|organism=Clytia hemisphaerica|type=transcript|length=387bp|location=Sequence derived from alignment at scaffold_183:39700..40086 (Clytia hemisphaerica)
TTCCgattagaatttttaaatattttatgatatattttagaaaattacat
taaatttttatattatgttcttggctgtttttaaataaatttaaagatgt
ctattttagtaaattttacTCTCTATAAACGTTATGCACAGTTTATGCAA
TCTAAACACTGCAGGTATAATTAATCTCAGTGTGCATTGATACATAAGGA
ATAAAATTATTGGAAAGACACCCTCAATCCTAATTCTCTTGAACCATGTT
CGAACTAAAACAAACTATAAAGTGTGCGCAGTTTAAAAAAGAGCctaaca
atgtttttttttaaacattgttgAAAGATGGTAGAAAATGTTAAGgcttg
atgaaattttgagagaTCATTCCTCGATTTTTAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032128XLOC_032128Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050704-exon-scaffold_183-1491911889:39700..40086TCONS_00050704-exon-scaffold_183-1491911889:39700..40086Clytia hemisphaericaexon
TCONS_00050704-exon-scaffold_183-1510915933:39700..40086TCONS_00050704-exon-scaffold_183-1510915933:39700..40086Clytia hemisphaericaexon
TCONS_00050704-exon-scaffold_183-1575043694:39700..40086TCONS_00050704-exon-scaffold_183-1575043694:39700..40086Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_183supercontigscaffold_183:39700..40086 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.39519	0	1.12836	0.441571	0.268785	0	1.28124	0.959587	0.167957	0	0	0.132741	0	0.275323	0.226353	0.242912	0	0.306719	0	0	0.192707	1.40994	2.05676	2.07766	0.213994	0.381969	0	0	0.221222	0.901561
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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