TCONS_00050706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050706
Unique NameTCONS_00050706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050706 ID=TCONS_00050706|Name=TCONS_00050706|organism=Clytia hemisphaerica|type=transcript|length=515bp
GTAGAATTTTATGTTTATGAAATTATCACTCATAAAACTtcatgaaaact
tgagcaaagacaaGAAGATTTggcaaaatgtttgaaaaaaggtTTACAAA
GCAAATTCACTacaaattttgttcgatttgaaagtctcttgaccaaaTAT
ATTTAAAGAAAATGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNACAAGAAGATTTggcaaaatgtttgaaaaaaggtTTACAAAGCAAAT
TCACTacaaattttgttcgatttgaaagtctcttgaccaaaTATATTTAA
AGAAAATGGTCTAGAAAGTCTAAAGCCTActctcgcttcgaccgccatct
tgttttgtttttgtgcaaACGTTGTTTGTTTACGGAGCGCGAAATCAGAG
AATATATCTTTCATAGTCAGTATTCGACTTTGGCGAGCTCTTTGCTTTTA
AGACGCCAAAATTAAGAAGTGTGGTACTGGtgttaagcgccgtttctacc
aaaacagACCCGGAC
Run BLAST on NCBI

transcript from alignment at scaffold_184:150..664

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050706 ID=TCONS_00050706|Name=TCONS_00050706|organism=Clytia hemisphaerica|type=transcript|length=515bp|location=Sequence derived from alignment at scaffold_184:150..664 (Clytia hemisphaerica)
GTCCGGGTctgttttggtagaaacggcgcttaacaCCAGTACCACACTTC
TTAATTTTGGCGTCTTAAAAGCAAAGAGCTCGCCAAAGTCGAATACTGAC
TATGAAAGATATATTCTCTGATTTCGCGCTCCGTAAACAAACAACGTttg
cacaaaaacaaaacaagatggcggtcgaagcgagagTAGGCTTTAGACTT
TCTAGACCATTTTCTTTAAATATAtttggtcaagagactttcaaatcgaa
caaaatttgtAGTGAATTTGCTTTGTAAaccttttttcaaacattttgcc
AAATCTTCTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA
CCATTTTCTTTAAATATAtttggtcaagagactttcaaatcgaacaaaat
ttgtAGTGAATTTGCTTTGTAAaccttttttcaaacattttgccAAATCT
TCttgtctttgctcaagttttcatgaAGTTTTATGAGTGATAATTTCATA
AACATAAAATTCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032130XLOC_032130Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050706-exon-scaffold_184-1491911889:150..664TCONS_00050706-exon-scaffold_184-1491911889:150..664Clytia hemisphaericaexon
TCONS_00050706-exon-scaffold_184-1510915933:150..664TCONS_00050706-exon-scaffold_184-1510915933:150..664Clytia hemisphaericaexon
TCONS_00050706-exon-scaffold_184-1575043694:150..664TCONS_00050706-exon-scaffold_184-1575043694:150..664Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_184supercontigscaffold_184:150..664 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.231881	0.22612	0.262547	0.642154	0.312704	0.247103	0.894358	0.279096	0.293102	0.363054	0	0.231647	1.61927	1.20117	0.855852	0.706508	0.348144	0.802882	0.246494	0.128969	0	0.328064	0.398805	0.120857	0.37344	0.444382	1.11284	0.678659	0.257369	0.131109
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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