TCONS_00050707 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050707
Unique NameTCONS_00050707
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050707 ID=TCONS_00050707|Name=TCONS_00050707|organism=Clytia hemisphaerica|type=transcript|length=535bp
CCAGACTGTAATATGACATTCATATCCATAGGATTTTTATTCGTAACTTG
CAATGATTGTCCAATATTTTCCTTCAACAGTTTAATTTCGTTTCGTAGGA
TGACATTTTCGATTCGTCCAGCAATAGTCAGTTTGTCAGCATCTGTCTTG
GTAGATTTGGTGTCGGTTTTTACTGAACATATCTCTGTGTTTGTGCCAGC
ATCAAGTGTTCCACTTGGTTCTTGAAATGTAGATGATGTTGGAGCAGCAT
TATTATTAGCAGCACCACCCGCATCAACAGAAGAGAATGTAAGGTTACTG
TTTCCTGTTGTTGTATCAGTGTCAATATCAACGTCTATAACAATAGTATT
TTCTGTACTTTCATGATCTGCAATTTCTTCTATAAGATGCACCGTCTGCT
GCTTGCTCCTTTTGGACTGTGGTAATTGTTCTCGATGCTTAGATTCTCTC
CGTTTCTTTGAGCTCTTTTCTATGTCTTCTGTAGAGAGTTTAGCCAGAAT
ATGGCCCTTTTCCTCCATAGAAATGTAGAGAGCAA
Run BLAST on NCBI

protein sequence of TCONS_00050707-protein

>TCONS_00050707-protein ID=TCONS_00050707-protein|Name=TCONS_00050707-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
ALYISMEEKGHILAKLSTEDIEKSSKKRRESKHREQLPQSKRSKQQTVHL
IEEIADHESTENTIVIDVDIDTDTTTGNSNLTFSSVDAGGAANNNAAPTS
STFQEPSGTLDAGTNTEICSVKTDTKSTKTDADKLTIAGRIENVILRNEI
KLLKENIGQSLQVTNKNPMDMNVILQS
Run BLAST on NCBI

transcript from alignment at scaffold_184:13258..13792

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050707 ID=TCONS_00050707|Name=TCONS_00050707|organism=Clytia hemisphaerica|type=transcript|length=535bp|location=Sequence derived from alignment at scaffold_184:13258..13792 (Clytia hemisphaerica)
TTGCTCTCTACATTTCTATGGAGGAAAAGGGCCATATTCTGGCTAAACTC
TCTACAGAAGACATAGAAAAGAGCTCAAAGAAACGGAGAGAATCTAAGCA
TCGAGAACAATTACCACAGTCCAAAAGGAGCAAGCAGCAGACGGTGCATC
TTATAGAAGAAATTGCAGATCATGAAAGTACAGAAAATACTATTGTTATA
GACGTTGATATTGACACTGATACAACAACAGGAAACAGTAACCTTACATT
CTCTTCTGTTGATGCGGGTGGTGCTGCTAATAATAATGCTGCTCCAACAT
CATCTACATTTCAAGAACCAAGTGGAACACTTGATGCTGGCACAAACACA
GAGATATGTTCAGTAAAAACCGACACCAAATCTACCAAGACAGATGCTGA
CAAACTGACTATTGCTGGACGAATCGAAAATGTCATCCTACGAAACGAAA
TTAAACTGTTGAAGGAAAATATTGGACAATCATTGCAAGTTACGAATAAA
AATCCTATGGATATGAATGTCATATTACAGTCTGG

Coding sequence (CDS) from alignment at scaffold_184:13258..13792

>TCONS_00050707 ID=TCONS_00050707|Name=TCONS_00050707|organism=Clytia hemisphaerica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_184:13258..13792 (Clytia hemisphaerica)
GCTCTCTACATTTCTATGGAGGAAAAGGGCCATATTCTGGCTAAACTCTC
TACAGAAGACATAGAAAAGAGCTCAAAGAAACGGAGAGAATCTAAGCATC
GAGAACAATTACCACAGTCCAAAAGGAGCAAGCAGCAGACGGTGCATCTT
ATAGAAGAAATTGCAGATCATGAAAGTACAGAAAATACTATTGTTATAGA
CGTTGATATTGACACTGATACAACAACAGGAAACAGTAACCTTACATTCT
CTTCTGTTGATGCGGGTGGTGCTGCTAATAATAATGCTGCTCCAACATCA
TCTACATTTCAAGAACCAAGTGGAACACTTGATGCTGGCACAAACACAGA
GATATGTTCAGTAAAAACCGACACCAAATCTACCAAGACAGATGCTGACA
AACTGACTATTGCTGGACGAATCGAAAATGTCATCCTACGAAACGAAATT
AAACTGTTGAAGGAAAATATTGGACAATCATTGCAAGTTACGAATAAAAA
TCCTATGGATATGAATGTCATATTACAGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032131XLOC_032131Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050707-proteinTCONS_00050707-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050707-exon-scaffold_184-1491911889:13258..13792TCONS_00050707-exon-scaffold_184-1491911889:13258..13792Clytia hemisphaericaexon
TCONS_00050707-exon-scaffold_184-1510915933:13258..13792TCONS_00050707-exon-scaffold_184-1510915933:13258..13792Clytia hemisphaericaexon
TCONS_00050707-exon-scaffold_184-1575043694:13258..13792TCONS_00050707-exon-scaffold_184-1575043694:13258..13792Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_184supercontigscaffold_184:13258..13792 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.29352	0.463886	0.139915	0.39296	0.458534	0.340781	0.551284	1.08718	0.434266	0.90198	0.370775	0.198949	0.735267	0.586153	1.38823	0.605285	0.210441	0.307937	0	0.113443	0	0.521399	0.149224	0.318512	0.24158	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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