TCONS_00050708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050708
Unique NameTCONS_00050708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050708 ID=TCONS_00050708|Name=TCONS_00050708|organism=Clytia hemisphaerica|type=transcript|length=400bp
CCGctttgttaaaaaatattaacatcTGTGATACTTCCTTCAAACAAGTC
TAGAACAAAACAAGCTGCACCATTCGGATTCACAGCAATCAAACATTTCA
TCGTGCAGTTGCTTTTACCTTGCTGTTTGTAATCACAGGGTGATccacat
ttaaaaaattttgggtaGCGTCTTTTTAAATACTTGTCTTTCAGGGAAGA
TGACATCCTTCAAACTTTTAAAATGATGGAACAGGAACATTATCCAAGTG
GTGAATATTGTCCTAATTGTCTTTTCACTGACATCATAGAAGTGTGCAAG
TGTATACAAGTTAAAACCACACAGGAGTCGTAACAGTGTTATAAAAAGTT
GATCTGGGATTGGCAATGAATTTCTTATTGTGGAGTTAATTTTGTTTGTG
Run BLAST on NCBI

transcript from alignment at scaffold_184:13892..14291

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050708 ID=TCONS_00050708|Name=TCONS_00050708|organism=Clytia hemisphaerica|type=transcript|length=400bp|location=Sequence derived from alignment at scaffold_184:13892..14291 (Clytia hemisphaerica)
CACAAACAAAATTAACTCCACAATAAGAAATTCATTGCCAATCCCAGATC
AACTTTTTATAACACTGTTACGACTCCTGTGTGGTTTTAACTTGTATACA
CTTGCACACTTCTATGATGTCAGTGAAAAGACAATTAGGACAATATTCAC
CACTTGGATAATGTTCCTGTTCCATCATTTTAAAAGTTTGAAGGATGTCA
TCTTCCCTGAAAGACAAGTATTTAAAAAGACGCtacccaaaattttttaa
atgtggATCACCCTGTGATTACAAACAGCAAGGTAAAAGCAACTGCACGA
TGAAATGTTTGATTGCTGTGAATCCGAATGGTGCAGCTTGTTTTGTTCTA
GACTTGTTTGAAGGAAGTATCACAgatgttaatattttttaacaaagCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032132XLOC_032132Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050708-exon-scaffold_184-1491911889:13892..14291TCONS_00050708-exon-scaffold_184-1491911889:13892..14291Clytia hemisphaericaexon
TCONS_00050708-exon-scaffold_184-1510915933:13892..14291TCONS_00050708-exon-scaffold_184-1510915933:13892..14291Clytia hemisphaericaexon
TCONS_00050708-exon-scaffold_184-1575043694:13892..14291TCONS_00050708-exon-scaffold_184-1575043694:13892..14291Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_184supercontigscaffold_184:13892..14291 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.617274	0.250491	0.197941	0.238808	2.01212	0.156526	0.193882	0.376374	0.494827	0.123535	0.256584	0.105473	0.339568	0	0	0	0.826484	0.179591	0	0.212974	0	0.797715	0.355971	0	0	0.41233	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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