TCONS_00050710 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050710
Unique NameTCONS_00050710
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050710 ID=TCONS_00050710|Name=TCONS_00050710|organism=Clytia hemisphaerica|type=transcript|length=1583bp
ATGGCTTCTCACTTTTAGGTTCAAGAAACAttacaaataaaataataaca
aataaCAAATAATAATGATCAAAGCAATATTGGTGTTCAATAATCATGGG
AAACCAAGGCTGAGCAAGTTCTTTACACATTATAGTGAAGAAGTTCAACA
GCAGATCATCCGTGAATCATTTCACTTGGTTTCAAGGAGAGATGATAATG
TTTGCAACTTTTTGGAAGGTGGCACGGCACTGGGTGGAGCTGACTCTCGA
TTGATATACCGACACTATGCAACTCTATATTTTGTTTTCTGTGTTGACTC
ATCTGAAAGCGAATTAGGAATTTTAGATTTAATTCAGGTTTTTGTAGAGA
CGTTAgacaaatgttttgaaaatgtttgtgAATTAGATTTGATCTTCCAC
GTTGATAAGGTTCAATATATTTTACAAGAGATCGTGATGGGTGGTATGGT
CTTAGAAACAAACATGACAGAAATTCTTACGCACATCGAAGCACAAAATA
AAATCGAAAAACAAGAGGGTGGTATATCAGCCAACACGACGAAAGCTCTC
AACGCTGTAAAAAACATGAGCCCGAATTTACCGAACCTTCCGAAGAATAT
CAATCTGCCGAACATCTCATTACCTAATATTTCATTCAATCGATAGAAAG
TGGGATTGCTTTGATTGTCGTTCATTTTGAAGCcaagagaaaaacatttt
taatcatCATCCACAGTACAAACATTAcaaaaaatgatcagaaaaaacaa
actaatttggTTTCCGGTATTATCATATCATTTTGATCGTAAAATTGGct
gttttatttttagaatgTTCAGAACTGTAGTCCATTTTTCGTCTGAGATC
ATAAAAACGCTGCCTTGACCATAGGTTATAAGGTGAACCTAAGCCACAGA
ATTTGGTTCCGCCTAAGTTAAGTTAGATTATTATTCTGTTTTAAAAcgat
aaaaaaattagattcgATAAGTTCAAGTTTCAAAAAATGAGGCAACTAAG
TATGTTGATAAAGTCTCTTTTTTCAAAGTGTTTACAGGTAGGTAGTAGAT
TCATGGTGAATTTTTGAtcgatttttattttaaattattaGCATTATCTC
AATTTCACATACACATAatttagtacacgttttttttataagaatggtgt
tttttcatttttgggaaaaaccatcctaaaatattcttacggtatatTCT
AAGGTTAGGATCCGACCCAGCCTAATTCTAGCATGTTATACATACCTTGA
GCAAAGATATGGCATTTTTGTGTGAAGATAATTGGCAAATTTGCAGGTAA
AACGCTCTAAAAATCGGCATTTTTtggttcagttgccaaatttcATTATG
GTgtaatttcatcatgaatattcttataaaaagcgtgtattgtgTAGAAA
AACAGGCCTTGTACCAGAATTTCGGAGTATTGTGTAGAAAAACAGGTCTT
GTACCAGAATTTCGGAGTATTGTGTAGAAAAACAGGTCTTGTGCCAGAAT
TTCGGAGGGAAATGTGTTTGTTGTTACTAATGAATTTTGtataaatttct
tatttttttggtaaaatatactaaaaattaaaa
Run BLAST on NCBI

protein sequence of TCONS_00050710-protein

>TCONS_00050710-protein ID=TCONS_00050710-protein|Name=TCONS_00050710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MIKAILVFNNHGKPRLSKFFTHYSEEVQQQIIRESFHLVSRRDDNVCNFL
EGGTALGGADSRLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKC
FENVCELDLIFHVDKVQYILQEIVMGGMVLETNMTEILTHIEAQNKIEKQ
EGGISANTTKALNAVKNMSPNLPNLPKNINLPNISLPNISFNR
Run BLAST on NCBI

transcript from alignment at scaffold_185:6407..19747+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050710 ID=TCONS_00050710|Name=TCONS_00050710|organism=Clytia hemisphaerica|type=transcript|length=13341bp|location=Sequence derived from alignment at scaffold_185:6407..19747+ (Clytia hemisphaerica)
ATGGCTTCTCACTTTTAGGTTCAAGGTTAGGTTTGTGTTTTACTTTTtaa
ctcttttcttttgtttttcgcACACACATACTCATGACATCCACAAATCT
GGTGAATTAAGCTTGTTTTATAAACTCTTCATTTGCCATTTTGCTAAAGC
TAAAGGGACcgaatgatgacgtcacaggTCAGGACACAGATTTgcttggg
aaaaacttcaaaatgcgatatctcgagtttgagaaggagttggaaggtcg
ttgacccctcattggatcgagaattctACTGGGAATAAGTTGGGAGGGGT
TATGAGGCTTGAGTGTGACTTTagaatttggctgaatttttaggNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNgaagctaaagacttacagccaatcagaatt
tgttagcgagcagtattcatccaattggaatcgcgtaacacgaaagcgaa
agtgaaagtcaaGGCGGAAATACATTCTTTTTTtgacgtgatttgcatat
attagaacagaaagaaacgcccaatttgtcaaagatttgattaaaaccac
cttattttttgttgagtatcgcctaaatttatcgaaaaaatatgcttttc
aacattaatcttaaaatctcttattgttaagtatccccggggcgctcaac
gccgaaagaaaaagaagcgggcggaaccgccctcgtagtttaatcccggg
attgaaaaaacctggagaaaatcttttccgtacatataatgtagctaagg
aattttaaaacacggcatttaaagtgaaacaagatggcggaggagtagtg
attggaggtttttgtaattagacagcatgacaaaggtttgttatatttta
gcataacaaagacaaactcaggaggtaaggtaaattgcattttgactgct
tttaactgtttttctaataaagaatatcttcaaacttgacttcactgatC
GAACTtcacgaaaatttcttgataagttcgatttagttcgatgagtgttc
tttgtttgatgaagttcgattgatgttcgatgagttcgattaagttcgat
gtggttcgatgaaagttcgatgattgtgtcggattgattctacttttctt
tcaGTTACATCAAGTGATGGAGTATATACAAGGCTGAAAGCCAtgtgaat
atggttcatcctataaaaggaagttcattctatggtggcctatcttgaag
tgaaggtggttgaacaaaatgtttttggcatattgatgtaactgtcttta
cctttcagaaaattacgaggttgtttaatcaaaacacaggcaccGTATGC
TTCACTCATTATTGCTCATTTGTTACagctaagtctaccatttttaacgc
GGTCCAAGAATTGATTAAAGAACGCTTGCAGAACGCCCGCGAGCTcccgc
gcgggtgaaaaacctttaaaaatacaaaagttgtattatatattttttac
tgctctattaaTATaatatactgaatttgaaagatctgcaaacttcaaaa
aacttatttttgtcctgcatgcagcatagggtacaaagtccaaatatgtg
tttcccgtaatttgtatgaagagttaagtCTATACTGTATATTATCTGAA
TAAAGCAGTAACAAATACAACATTTTATTTatccatttttttgcaaatgt
aCTGCGAGAAAGCGGAAAACGCTAGTGTGGGCTGGATGAGATCGAACGAT
AAGTGAAGACATGATGTTAAAGACTAGatatatatttgacaatgaagaCG
TACTGTCCAAATAATCCCATACTTCATCTTAGCTGGTCTGGATTATAACG
CCACTATACTAGTTAAAAATGAATATGAAGATTCATTGTTGACTTGTTGA
TGGTCAGGCTTCATTCAACTGTCCTTGCTGGAAAGAATGGACTTTCAAAA
CCACATGGCACAAGGAGGAGAACTCTCCCAGCAAGGAACCCAAAAAAGTC
GTCCCAGATGGACCatattataccgggtgcgccacaaaaaagtttctctc
tttaaaactaattttctcgaaatctaaaagttttaaaagaacctgaaaga
accattcctatttcattggaaagaagaaagataaacttaaattttggtgg
gtcatttattgaatttgattcattagatcaaaagttatactcaattgaat
aaaaaagttactttcagaaaatgctcaaaaacgttaaaaatcgacctagt
AAGTAATCAAACTCAACAAAAGGTTGACAACGTCACTCTAGAGATGCCAG
TCCAGTTGGTAGATGATAAAGGGTCCACTTTAGTTGGCTTTATGGTCCAG
GAATGGACATGAAATTGTCCTACCATTTATTAAAACTAAAATGTATCCAA
ATTTTACTCTAGCCTCTTTTCTTTCAGAGTGTGAAGTcataaattttcca
atttttttcttggTCCAATAATAGGCATTATTTTGTCCATACTTTTTGTG
TTACAGGACAATTTATTGTCATTTTAAAGACCCTTTTAAATCTGTTTCTT
AGAAATATCATATTGCCCTGCCTTGCTGGACAATTGTGTATAATTTCAGC
CTGCTAGAGTAAAGCAGTCAAGTGTTATGACCACAAGACAATTTTTGTTC
TTTGCTTTAGGGCAATCTTTTGTCCCAATTTGGACCGCAATTTAAACTAA
TTAGTTTAGTAAGATAAAAGGTCCCAAATTTAGATTGTAAAGGTCCTTTC
TATAACTGCCCCAGTGTTTGCCTCTTAACAATATTTATCTAATCAAAGGC
ATCTCATttggtaaaattgaaatatttggtgtaataaagctTGCAGGTAT
CACACTTAAGTAGCCTGTCAATCAAAAATCACTTCGTCAAGAAAATGACA
GATAACGTCCACATTATTAAAAGCAACATGTGGAAGAAACATGTGCTACC
ATTTGCCATCAATAAATACAGGGGCTTAAAGCCATTCATTTTGCTACATA
TGAAGTTTAACAATTCACAATACTTTTTGACACCCATGGCCTCAAAATCT
CTTGCATATTGGATGACTTCATCATTTCAGTGTTATGTATAAGGGGGTGG
TTGGAGAAGAATTTGCAGAGGTAGTTATTTCTGGTGATGGCGTTTGAAGC
GGACTTATTGCGAATGTTGGTAAGGCTATAAATTCTGTAGTATCACCCTT
CCTTAACCATTGGTTTTGACTCTGTATGTCTGTTTTGGTGTGTTTTGACA
ATTACTTCAGAATGAAGCTATTGAGGCTGATGCTTCTTATCACAGCTTGG
GGTGGTTATGATGAGGAGGGAGGTGTCAATCAACATTAGAAATCTAAatt
tattacatgtttttctttttataagcatatgaagactcagattttcagat
tttctaagcataacataagtaATGAgccagcctgaaatatttttcaagtc
atcaaactttttctgatCAAAAAGGTTTAAAAGTGGTCTTAAACAAAAAG
ATATTCCAGGGATagccacattccactgctcctaaaatcttttttgctGT
TTGAATCAAGTGTTTGCAAAATTTCTGAGATTTTACAAAACTTGGCTTAG
GGTGAATAATAAACATTATAATTGATAACCATATGATAAGCATATGCTAA
AGCTGAattctttgaaagtttttaagcATGCACAAGCATGGCCaagggca
gacacttgcttataaaaaaaaaaatNTTGAAGCGGACTTATTGCGAATGT
TGGTAAGGCTATAAATTCTGTAGTATCACCCTTCCTTAACCATTGGTTTT
GACTCTGTATGTCTGTTTTGGTGTGTTTTGACAATTACTTCAGAATGAAG
CTATTGAGGCTGATGCTTCTTATCACAGCTTGGGGTGGTTATGATGAGGA
GGGAGGTGTCAATCAACATTAGAAATCTAAatttattacatgtttttctt
tttataagcatatgaagactcagattttcagattttctaagcataacata
agtaATGAgccagcctgaaatatttttcaagtcatcaaactttttctgat
CAAAAAGGTTTAAAAGTGGTCTTAAACAAAAAGATATTCCAGGGATagcc
acattccactgctcctaaaatcttttttgctGTTTGAATCAAGTGTTTGC
AAAATTTCTGAGATTTTACAAAACTTGGCTTAGGGTGAATAATAAACATT
ATAATTGATAACCATATGATAAGCATATGCTAAAGCTGAattctttgaaa
gtttttaagcATGCACAAGCATGGCCaagggcagacacttgcttataaaa
ataaaaatttttctttaattacaTTTTtacattattattttttacatgGA
TATGTGATATATTTCTATTTGTCTCAGCATTTTAACATTCACCCCTGTTT
ATCCAGAAAAAGTTGGATCAAGTTAACAAAGTGGCTGAGAAGTTGACAAG
TAACAAATCAAAGAAATAAAGCAGGTTAAAGTTTAAGAGAAAGAAATACT
TTAGAGGATGAGTGGAAAAGAAGCAAGTTGCTGATGAAAGCACTGAATTT
ATaggaaagtaaacaaagttGTGAGTTACTCTATCTAAAGTATTAAATGG
ATAGTTAGGTGGCTGGCAAGTGTGTAATTTATTGAAGTTTTTAACATAAG
TACATAAGTCTATTGGATAATTTAGAAATAATTTTGTTGATTCCTTTTTT
GTATTTAACCatagaattctttaaaaatatgtCTTTACTCAGAACTTTTC
ATGAAAACAACTTAAAACTTTATCTGGAGAAAGAAGGCAAAAAAGAAGAT
GTTGCTGAAAATGTGCTTAAAGAAAAATCCACACAGgaagaaatcatgaa
aatttaTTCTAGGGAAGTTGATTCTTATGTAACTCAAGAATTAAAGCATA
TGACCAACTCTGATAAAGAAAAGCATATTTACTCTGCTATCGTAACGATG
GCCATGGATACAGCCTTCAGTAAGGTTGGAATGTCTGATTGTGATTGCGA
GAAACATATTCTTGGTAACTGGAAATTCATGATGGTGCCTCTTTATAGGG
GTATAAAAGGTAGGTTGAAGAGAGCTGTGGAGACTCCTGATGGTGAATCA
CCTATTGAGAAGTTTGCTGCTTATTGTACCAGTGGAACAATGAATGTTTA
TAAAGATTTTGATCCTGATATTCTTGGGATCAAAAGTGGTAATTCTTATG
GTTTCAACCTTAATCGGTGTTTGTTTTACGAGTGTTTTCAAAGGCATGGT
AAAGGTGAAAGAGTTGGAAGTGTTATGTGTAATTTTGATCAGATTCTAGC
TGATGTTTTATCACCATGGCTTGAGTTCAATCATAATTCTACAATAGCAC
GAGGAGGTTCTTGTTGCCAATTTCGTTATTGTACAAAAGGTATCGACCCC
TCAAAGCTTGATTGGTGAGTATGATTTTCAGCTGAAGCTAAAACAAGTAA
AAtattcgtttttgttttttaaagccCAGTTAATTATTCGAAGTGGTGAA
TAAGGCGTTAATCCAATCAAAGTGATTAAAGAAATAATCCTTGTACTAGT
AATGTTAAATAAGATATATTCAATATATGATAATTATATGAAAataattg
tttattttttaatagtTTGAAACGCTTTACAGTATTAGAACGAGAAAAAT
AAATCCATATTGCACGAGGCATTATgcgataactggtttatcgtatgaag
tgcaaaaaaattttgttttacatCGTTGATTGATCGATAAAGGAACgcta
aattttttcaaacatccACCTCTACCTATACAACCAACAAACCAACCAAT
GCATAGCTTCAATCAATGCACTGtttattattcaaaatcaaaaccaacat
TTGAATGATTTGTCTCCTCCAAAAAAGGGAAGACGAAcaatttttggttt
gttttgattttgttttggcattccaaaaacattcgaatgtgcGTTCTATT
CAACGGCTTTTCGATTTTGAACTTCTCGGCTtcgatctaccattttgaat
ttttcgctTGTATTTGCACCGTTTTCGCTTATTATTGGAACcgtttttct
tcattattttcctttttttgggaCTTATTTTATTTGCACTGTTTTTAGTG
AATAACACGTTTATGCATTTGTTctaagccaatcagattgctcatatttt
tttgcaccacaaaataagcttaattattttgacttttttttttttttgga
tttgattttGTAACATACTGTACTATATAAATTTATGATGATTCAACTTT
ATGTCTTGATAAAAAGATCACAAAGCATTTCTCATCAAAGCTGTTTCTTC
TTTCATGATTCTGATTTAAATTCTTTATATTTCATAGAATAGAAACAtta
caaataaaataataacaaataaCAAATAATAATGATCAAAGCAATATTGG
TGTTCAATAATCATGGGAAACCAAGGCTGAGCAAGTTCTTTACACATTAT
GTAAGTCAATTATTATTGCAATTCCCATAATATGATAAATTCTCGCTGGG
ATTAACATTTTGCGGATGAGGGATTTCTTGATTGTTTGCAAGGATGTaca
aattttttgcacaatttgcaatatatattttttattttgtcagaAGTTGC
TCCATTagttttttcggattttttacatgaagaaagaggaaaagattaTC
TAAAAAGTGGCTTAAATCGTTTTTCCCGGGAATTTTTTTGCCCATAAAAA
tcaggtttttgtttttttgggaaattcccttctgtcatttttagggaaag
tgagcatttctcgcgattggcttaggatttttttctgacttttttagTTT
ACATTTTCTTAATACATTAGACTCCGGGTaagtccattcagcatgtagct
tgtttttttACATAGCTTTTCCTTAGGTTAAGACTTTTAAAAAGCAAATG
TTATAAAGGTCTCGATGTTTGTTTAGAGTGAAGAAGTTCAACAGCAGATC
ATCCGTGAATCATTTCACTTGGTTTCAAGGAGAGATGATAATGTTTGCAA
CTTTTTGGAAGGTGGCACGTAAGTTGAAACTTAgtaaatatatctttttt
tggaaaaaaggctcAACTATGCTTAGCAATATTTTGGAATCATTATTATT
AACCTTAGCATATCAAATTATGCTTGTGATATGCTAAGGTTAAAATTGGG
CGATTAAAGATACTATTTATTTTTCAGTGTAAATACTTGATAAAACATCT
TGAAATGACTGGAAAATTAACCTTCCCAAGTACACAACCTATGATCAATG
ACAAAAGCCCACTGATTGATATGCTTaaaatatgcttattttttcaccca
ataatagtgtccacatactttaaataataattaaaatttttatgcTCGTC
TCAAAGTttacatttttatcttttatttacaGGGCACTGGGTGGAGCTGA
CTCTCGATTGATATACCGACACTATGCAACTCTATATTTTGTTTTCTGTG
TTGACTCATCTGAAAGCGAATTAGGAATTTTAGATTTAATTCAGGTATGA
TTTTGACTGTGGTGCAGAAACCTGACTTTTCAAACCCACTGATCTAAAAC
ATGCCactcaccaaaatttcaattatttttaggGCACGTTTCACGATACT
AACTTTCGCATATTTCCTGTAATTCCCACTATTACAGATATTGAATTTAG
ACAATTTAGGAGACATCGAAACCCCTTTataagaggcccccccagccgAC
CCttaattcacgcaatcacgcaattttttttcgaaattcacgcattcacg
caaattttcttcgagtttcacgcaataacccgatttttcaggaaatcgga
aaattttccggaaaaatcggggaaacattagaaaatcgggaaaactgcac
attatttctggaaaaaagggaaaattcacgtattcacgcacaacaTAGCC
atgattcacgcattcacgcaatcaaaaagtgaattttcacgttcacgcaa
gttttttccaattcacgcattcacgcattttttttccaattttcacgcat
tcacgcaaccgaaaatgcccattcacgcattcacgcaaaccgctgggggg
ggggccccTTTATAAGGATTCTTAACCCCCGTGTTGCAAGTTTAAATAAA
ATACGAAGAAAGATGCGAGACAAGTAAAATGTTCtttagtattcatgata
tgcaccattgcaatgtcttctgttccacccaatagctgattggttgaaag
tgacgtattgactgcttttacgtcactttcaaccaatgagctattgggtc
catgatgtaatgtcagaagacattgcagtggtgcatatcggAATATCGGC
TTGCTCTAAAACATATCCTAGAGGAACACGTTCAACGCTCAAGGACAGCC
ACATCTTCATGACACCCCTCCCCTGCCATTTTCCCCATCCCGTCCCTTTC
TCGTCATGATAATTTGTGTCTGACCTTGTTCTGAacttttgttccttttt
ttttaaCGCTGTATATACTTTTAGCTTTTTATTTTTCCCTAACCATGTAC
CTTATCTTAtaggtgataaaagagatttattattattatatatcatgaat
atattttgtttttttcttttaatatttaGGTTTTTGTAGAGACGTTAgac
aaatgttttgaaaatgtttgtgAATTAGATTTGATCTTCCACGTTGATAA
GGTATGGGATTGATACTTCATGATTTTAACTAGAAATTAAGCCTCAAACT
CTTAAGGTGACACATATAGCTCTCAATTTTATATAAAGAATTACTGTTAT
AAGCACGCTGGTTTATGGCTATAAAGTCAGATCTTCTATCTTTTGATTGA
CGTTACTTGGATGTACTTTGCTTTGTGTGAAAGAACAGATTTCTCTTGAG
ACTGCTATTCGATCGATTTTCTATTATTCAtcacaccccttctcacagac
ccactgggaaaccttcccactggaaaaattggccaaaatatagTCCCCgc
tggaaaattatcctccaatttttgtcctcactgcaaaatattatgctatg
cTATTctccccatccccactggatttctgacttaaaaacaaataaattta
aATCCCCAGACGTAAAAaccatgggaatatcaatccccatcgagtttcgg
tccgttatttttaccgcCATTGGTTGAAacaatcctaccgggtctgtgtt
TCATCAAATTCTGGATTTCTGCTTGCTCTGAAGTTTGACTTTTATGTATt
cattcatttttcttctttttttgtcaCGTCAGGTTCAATATATTTTACAA
GAGATCGTGATGGGTGGTATGGTCTTAGAAACAAACATGACAGAAATTCT
TACGCACATCGAAGCACAAAATAAAATCGAAAAACAAGAGGTCTGTAGag
tttttatgttttcttttttgtgaACGGGTTGTTGGTTGTTATGTATCAGT
AGATGGGTGATTATTTGCCGATAGCAGGACCCGTTACCCAGTCTGTTCCt
gtaaagaatcctgcattataatacgcatgcgtaattttttgttcttttaa
ccatatgtagttaatttttgcaataaagAAAGAGGAATCAAAACATTACT
GTGATCCGGGTCGGAGGTGTGGATGGCAGAATTTGTCGtccttttttttc
catttttttaaatgtagaaTTCTTTAGATTCACTCCCTTAGAATTGAAGG
TTAAATgggaattcttaaaaaaaaggtcTTACTGGCTCAAAGTGGGAAGC
ATGACCTTTAAAGAATTTGTTTTCTTCTGGTAAAGAAGAACTTGCAAGCG
AAACGAAAAAGCGAAAGTCTTTAGTCTCGAAGACTGATGGGTACATTCGT
TAGCTTTtcaaatgttgatattttgatAGAGGTAACTCAGAAAGCCCTCA
TGGTCGTCCCTTATCGACTCTGACAGGCAGGTAATTCCCGCTTCTTGGGT
TGGCAGGTATTCTGAAATACTCCTAATGGGATGATAGGTCATAAGTAAGG
TATAGTAAAATCATGGGTggtaaagaaaattgaaaagtttataaaaataa
aataaaaaagaaatacgaATTTATTTACAAGAGACAAGATATTAAGCATT
TGAACAGAGAaaggaaaactttcaaaataagCTTTTCAatgttctttctt
ttttgtaGGGACCTACTGATTGGGAATTTTTCATCGGGAAAACAATATGA
CCTCAGAAAAAAACATGTGAACATCACTGACACTCTCATGACGGACCATA
CTCTTTACCTTAAACTCTGACATACATTTATCATTCACTCATGCCTATTT
ACTATACAAAACTAAGTTAATTTATAGTTTTGTTCTCGATAcgatttttt
atatatttttatatattatttaagacagagtttattttttatacatacta
atttatttttgatacaAATTGTACAAATTGTACAGTAATTCGAAATTTTC
ACCAATAAACTTAATTTAAAGGACACCATATAACATATCCCCAAACATTT
GTTTATGGTCTGGTGATGAGAAAAACCTTTTTCCTTTATGGGTTTTCATC
TTGTTTCCTCGTGATATAGTTTCTTGGGACTTCCAAACCAGCTTTCGCCA
ANTTCCTTTATGGCTCTTCATCTTGTTTCCTCGTGATATAGTTTCTTGGG
ACTTCAAAACCAGCTTTTGCTGGCAAAGttggggaaaattttctagGGAA
CATTAAAAGTGGTAAGATCATTTTGGCACTGAGACACTTGGAAAGTCAAT
TTAAAGTTCCTTATTGACAAGACCTGATTGTAACATCTGATAGAGCTTGA
AANGAAAGTCAATTTAAAGTTCCTTATTGACAAGACCTGATTgtaccatc
tgatagagctTGAAAAGTAGTTCTCCGGAATagggtcatttgtctcattt
ggtCGACTAAGGAgaataaaaatatactttttgacaaaaaaatactttta
gcAGATCCGTCTCGAAGAGTTAATAGGGTTTCCATGGCAACGTATTAata
tatttgagtttgaaattttgctgactcagcagaaaaGACCAAAAACAACG
AGTCTGCAAATATCTTAGCCATGGAAATCTGCACATAGCACACATGTTAG
GGTTCGAACTATGAACGTTGAGgtttagatttttaaattcctttttaagc
aagatttcttttctttcaacctTAGGGTGGTATATCAGCCAACACGACGA
AAGCTCTCAACGCTGTAAAAAACATGAGCCCGAATTTACCGAACCTTCCG
AAGAATATCAATCTGCCGAACATCTCATTACCTAATATTTCATTCAATCG
ATAGAAAGTGGGATTGCTTTGATTGTCGTTCATTTTGAAGCcaagagaaa
aacatttttaatcatCATCCACAGTACAAACATTAcaaaaaatgatcaga
aaaaacaaactaatttggTTTCCGGTATTATCATATCATTTTGATCGTAA
AATTGGctgttttatttttagaatgTTCAGAACTGTAGTCCATTTTTCGT
CTGAGATCATAAAAACGCTGCCTTGACCATAGGTTATAAGGTGAACCTAA
GCCACAGAATTTGGTTCCGCCTAAGTTAAGTTAGATTATTATTCTGTTTT
AAAAcgataaaaaaattagattcgATAAGTTCAAGTTTCAAAAAATGAGG
CAACTAAGTATGTTGATAAAGTCTCTTTTTTCAAAGTGTTTACAGGTAGG
TAGTAGATTCATGGTGAATTTTTGAtcgatttttattttaaattattaGC
ATTATCTCAATTTCACATACACATAatttagtacacgttttttttataag
aatggtgttttttcatttttgggaaaaaccatcctaaaatattcttacgg
tatatTCTAAGGTTAGGATCCGACCCAGCCTAATTCTAGCATGTTATACA
TACCTTGAGCAAAGATATGGCATTTTTGTGTGAAGATAATTGGCAAATTT
GCAGGTAAAACGCTCTAAAAATCGGCATTTTTtggttcagttgccaaatt
tcATTATGGTgtaatttcatcatgaatattcttataaaaagcgtgtattg
tgTAGAAAAACAGGCCTTGTACCAGAATTTCGGAGTATTGTGTAGAAAAA
CAGGTCTTGTACCAGAATTTCGGAGTATTGTGTAGAAAAACAGGTCTTGT
GCCAGAATTTCGGAGGGAAATGTGTTTGTTGTTACTAATGAATTTTGtat
aaatttcttatttttttggtaaaatatactaaaaattaaaa

Coding sequence (CDS) from alignment at scaffold_185:6407..19747+

>TCONS_00050710 ID=TCONS_00050710|Name=TCONS_00050710|organism=Clytia hemisphaerica|type=CDS|length=3492bp|location=Sequence derived from alignment at scaffold_185:6407..19747+ (Clytia hemisphaerica)
ATGATCAAAGCAATATTGGTGTTCAATAATCATGGGAAACCAAGGCTGAG
CAAGTTCTTTACACATTATAGTGAAGAAGTTCAACAGCAGATCATCCGTG
AATCATTTCACTTGGTTTCAAGGAGAGATGATAATGTTTGCAACTTTTTG
GAAGGTGGCACGGCACTGGGTGGAGCTGACTCTCGATTGATATACCGACA
CTATGCAACTCTATATTTTGTTTTCTGTGTTGACTCATCTGAAAGCGAAT
TAGGAATTTTAGATTTAATTCAGGTTTTTGTAGAGACGTTAgacaaatgt
tttgaaaatgtttgtgAATTAGATTTGATCTTCCACGTTGATAAGGTTCA
ATATATTTTACAAGAGATCGTGATGGGTGGTATGGTCTTAGAAACAAACA
TGACAGAAATTCTTACGCACATCGAAGCACAAAATAAAATCGAAAAACAA
GAGGGTGGTATATCAGCCAACACGACGAAAGCTCTCAACGCTGTAAAAAA
CATGAGCCCGAATTTACCGAACCTTCCGAAGAATATCAATCTGCCGAACA
TCTCATTACCTAATATTTCATTCAATCGATAGATGATCAAAGCAATATTG
GTGTTCAATAATCATGGGAAACCAAGGCTGAGCAAGTTCTTTACACATTA
TAGTGAAGAAGTTCAACAGCAGATCATCCGTGAATCATTTCACTTGGTTT
CAAGGAGAGATGATAATGTTTGCAACTTTTTGGAAGGTGGCACGGCACTG
GGTGGAGCTGACTCTCGATTGATATACCGACACTATGCAACTCTATATTT
TGTTTTCTGTGTTGACTCATCTGAAAGCGAATTAGGAATTTTAGATTTAA
TTCAGGTTTTTGTAGAGACGTTAgacaaatgttttgaaaatgtttgtgAA
TTAGATTTGATCTTCCACGTTGATAAGGTTCAATATATTTTACAAGAGAT
CGTGATGGGTGGTATGGTCTTAGAAACAAACATGACAGAAATTCTTACGC
ACATCGAAGCACAAAATAAAATCGAAAAACAAGAGGGTGGTATATCAGCC
AACACGACGAAAGCTCTCAACGCTGTAAAAAACATGAGCCCGAATTTACC
GAACCTTCCGAAGAATATCAATCTGCCGAACATCTCATTACCTAATATTT
CATTCAATCGATAGATGATCAAAGCAATATTGGTGTTCAATAATCATGGG
AAACCAAGGCTGAGCAAGTTCTTTACACATTATAGTGAAGAAGTTCAACA
GCAGATCATCCGTGAATCATTTCACTTGGTTTCAAGGAGAGATGATAATG
TTTGCAACTTTTTGGAAGGTGGCACGGCACTGGGTGGAGCTGACTCTCGA
TTGATATACCGACACTATGCAACTCTATATTTTGTTTTCTGTGTTGACTC
ATCTGAAAGCGAATTAGGAATTTTAGATTTAATTCAGGTTTTTGTAGAGA
CGTTAgacaaatgttttgaaaatgtttgtgAATTAGATTTGATCTTCCAC
GTTGATAAGGTTCAATATATTTTACAAGAGATCGTGATGGGTGGTATGGT
CTTAGAAACAAACATGACAGAAATTCTTACGCACATCGAAGCACAAAATA
AAATCGAAAAACAAGAGGGTGGTATATCAGCCAACACGACGAAAGCTCTC
AACGCTGTAAAAAACATGAGCCCGAATTTACCGAACCTTCCGAAGAATAT
CAATCTGCCGAACATCTCATTACCTAATATTTCATTCAATCGATAGATGA
TCAAAGCAATATTGGTGTTCAATAATCATGGGAAACCAAGGCTGAGCAAG
TTCTTTACACATTATAGTGAAGAAGTTCAACAGCAGATCATCCGTGAATC
ATTTCACTTGGTTTCAAGGAGAGATGATAATGTTTGCAACTTTTTGGAAG
GTGGCACGGCACTGGGTGGAGCTGACTCTCGATTGATATACCGACACTAT
GCAACTCTATATTTTGTTTTCTGTGTTGACTCATCTGAAAGCGAATTAGG
AATTTTAGATTTAATTCAGGTTTTTGTAGAGACGTTAgacaaatgttttg
aaaatgtttgtgAATTAGATTTGATCTTCCACGTTGATAAGGTTCAATAT
ATTTTACAAGAGATCGTGATGGGTGGTATGGTCTTAGAAACAAACATGAC
AGAAATTCTTACGCACATCGAAGCACAAAATAAAATCGAAAAACAAGAGG
GTGGTATATCAGCCAACACGACGAAAGCTCTCAACGCTGTAAAAAACATG
AGCCCGAATTTACCGAACCTTCCGAAGAATATCAATCTGCCGAACATCTC
ATTACCTAATATTTCATTCAATCGATAGATGATCAAAGCAATATTGGTGT
TCAATAATCATGGGAAACCAAGGCTGAGCAAGTTCTTTACACATTATAGT
GAAGAAGTTCAACAGCAGATCATCCGTGAATCATTTCACTTGGTTTCAAG
GAGAGATGATAATGTTTGCAACTTTTTGGAAGGTGGCACGGCACTGGGTG
GAGCTGACTCTCGATTGATATACCGACACTATGCAACTCTATATTTTGTT
TTCTGTGTTGACTCATCTGAAAGCGAATTAGGAATTTTAGATTTAATTCA
GGTTTTTGTAGAGACGTTAgacaaatgttttgaaaatgtttgtgAATTAG
ATTTGATCTTCCACGTTGATAAGGTTCAATATATTTTACAAGAGATCGTG
ATGGGTGGTATGGTCTTAGAAACAAACATGACAGAAATTCTTACGCACAT
CGAAGCACAAAATAAAATCGAAAAACAAGAGGGTGGTATATCAGCCAACA
CGACGAAAGCTCTCAACGCTGTAAAAAACATGAGCCCGAATTTACCGAAC
CTTCCGAAGAATATCAATCTGCCGAACATCTCATTACCTAATATTTCATT
CAATCGATAGATGATCAAAGCAATATTGGTGTTCAATAATCATGGGAAAC
CAAGGCTGAGCAAGTTCTTTACACATTATAGTGAAGAAGTTCAACAGCAG
ATCATCCGTGAATCATTTCACTTGGTTTCAAGGAGAGATGATAATGTTTG
CAACTTTTTGGAAGGTGGCACGGCACTGGGTGGAGCTGACTCTCGATTGA
TATACCGACACTATGCAACTCTATATTTTGTTTTCTGTGTTGACTCATCT
GAAAGCGAATTAGGAATTTTAGATTTAATTCAGGTTTTTGTAGAGACGTT
AgacaaatgttttgaaaatgtttgtgAATTAGATTTGATCTTCCACGTTG
ATAAGGTTCAATATATTTTACAAGAGATCGTGATGGGTGGTATGGTCTTA
GAAACAAACATGACAGAAATTCTTACGCACATCGAAGCACAAAATAAAAT
CGAAAAACAAGAGGGTGGTATATCAGCCAACACGACGAAAGCTCTCAACG
CTGTAAAAAACATGAGCCCGAATTTACCGAACCTTCCGAAGAATATCAAT
CTGCCGAACATCTCATTACCTAATATTTCATTCAATCGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032134XLOC_032134Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050710-proteinTCONS_00050710-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050710-exon-scaffold_185-1491911889:6407..6431TCONS_00050710-exon-scaffold_185-1491911889:6407..6431Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1510915933:6407..6431TCONS_00050710-exon-scaffold_185-1510915933:6407..6431Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1575043694:6407..6431TCONS_00050710-exon-scaffold_185-1575043694:6407..6431Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1491911889:13899..14006TCONS_00050710-exon-scaffold_185-1491911889:13899..14006Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1510915933:13899..14006TCONS_00050710-exon-scaffold_185-1510915933:13899..14006Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1575043694:13899..14006TCONS_00050710-exon-scaffold_185-1575043694:13899..14006Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1491911889:14483..14574TCONS_00050710-exon-scaffold_185-1491911889:14483..14574Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1510915933:14483..14574TCONS_00050710-exon-scaffold_185-1510915933:14483..14574Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1575043694:14483..14574TCONS_00050710-exon-scaffold_185-1575043694:14483..14574Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1491911889:14939..15050TCONS_00050710-exon-scaffold_185-1491911889:14939..15050Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1510915933:14939..15050TCONS_00050710-exon-scaffold_185-1510915933:14939..15050Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1575043694:14939..15050TCONS_00050710-exon-scaffold_185-1575043694:14939..15050Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1491911889:16136..16207TCONS_00050710-exon-scaffold_185-1491911889:16136..16207Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1510915933:16136..16207TCONS_00050710-exon-scaffold_185-1510915933:16136..16207Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1575043694:16136..16207TCONS_00050710-exon-scaffold_185-1575043694:16136..16207Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1491911889:16789..16896TCONS_00050710-exon-scaffold_185-1491911889:16789..16896Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1510915933:16789..16896TCONS_00050710-exon-scaffold_185-1510915933:16789..16896Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1575043694:16789..16896TCONS_00050710-exon-scaffold_185-1575043694:16789..16896Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1491911889:18682..19747TCONS_00050710-exon-scaffold_185-1491911889:18682..19747Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1510915933:18682..19747TCONS_00050710-exon-scaffold_185-1510915933:18682..19747Clytia hemisphaericaexon
TCONS_00050710-exon-scaffold_185-1575043694:18682..19747TCONS_00050710-exon-scaffold_185-1575043694:18682..19747Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_185supercontigscaffold_185:6407..19747 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.2458	40.3096	26.531	26.1359	24.5595	17.9763	37.9099	41.9187	36.9753	35.1958	27.6226	23.6286	18.0135	18.1143	24.2365	24.5263	23.131	19.354	10.4786	14.9409	14.4081	12.407	26.801	24.8508	16.2455	18.7187	24.5878	17.7376	27.9867	22.1754
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022775AP_mu_sigma_su
IPR000804Clathrin_sm-chain_CS
IPR011012Longin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0030117membrane coat
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006810 transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030117 membrane coat
Blast
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BLAST of TCONS_00050710 vs. Swiss-Prot (Human)
Match: AP3S2 (AP-3 complex subunit sigma-2 OS=Homo sapiens GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 9.450e-92
Identity = 128/165 (77.58%), Postives = 150/165 (90.91%), Query Frame = 2 
Query:   74 AILVFNNHGKPRLSKFFTHYSEEVQQQIIRESFHLVSRRDDNVCNFLEGGTALGGADSRLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVQYILQEIVMGGMVLETNMTEILTHIEAQNKIEKQEGGISANTTKALNAVKNM 568
            AILVFNNHGKPRL +F+  + EE+QQQI+RE+FHLV +RDDN+CNFLEGG+ +GG+D +LIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFH+DKV YILQE+VMGGMVLETNM EI+  IEAQN++EK EGG+SA   +A++AVKN+
Sbjct:    4 AILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNI 168
The following BLAST results are available for this feature:
BLAST of TCONS_00050710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AP3S29.450e-9277.58AP-3 complex subunit sigma-2 OS=Homo sapiens GN=AP... [more]
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