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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050711 ID=TCONS_00050711|Name=TCONS_00050711|organism=Clytia hemisphaerica|type=transcript|length=438bp
ATATCACGTCCTTCTAAAATATGGTGGAGATAATGTGTACTGACCTTACG
GAGAGAATCGTCTGTAACCAAGGCAACATAAGTCGTAGCCTCAACTTTTG
TCCCATTCGATAATTCTACTTGGATTTTCCGTCTCTCGTAAAGCCCATTA
TCAACTTCTTCAAATGTATCCAATGTAGATAGACCTTTCTCGTTACATCG
ATATAAAACACCATACACATGTGCATCATCCATTTGACAAATATTTGCAG
CAGTAAACCCTTCACCTAGAGACATATTTAACTTGAACTTGTATCCGTCT
AGTTTAGCAACTTGTCGATCAGTAAAATCAACTTTCCTATCTGTCATTCG
TTGTTGGTTCATGTTAGAACCGTACGAAAAATACCATAAATCAAGAGTAT
CATCTGCCATTTTTTTggttattaatttttgtttactg Run BLAST on NCBI transcript from alignment at scaffold_185:29824..32937+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050711 ID=TCONS_00050711|Name=TCONS_00050711|organism=Clytia hemisphaerica|type=transcript|length=3114bp|location=Sequence derived from alignment at scaffold_185:29824..32937+ (Clytia hemisphaerica)
ATATCACGTCCTTTCAAAATATGTTGGAGATAATCGAAGCCAACTTTACA
AATATTATCATCAGTTTTATCCTTCAATGCGATGTAAGTGACTGCTTTTA
CTACAGAATCGTCCGACAATTCGACATTTACCGTTTTTCTCTCATACATT
TTATTCCGGACACCTTCATATTTGTCTAGTGTAGACAGACCCTTTTCCGT
ACACCGATATAAGGCCCCATACACACATTGGCCTTTCGTTTCAATTATAT
TTGCAGCAGCTGTTCCATTTCTGAGCACTTTATGTAACTTTAGTTCGTAA
TTGGACAGTTTTGCACATTTCCGTTCTGTAAAATATACTTTTCGGTCCGT
CATTCTATCCGCGTTCATGTTTGAGCCAAAAGCAAAATAATAGACTTCAT
CTGTTGCCATTTCATAAATTGTATAAATtctcaatattttttcaatagca
ctatgataaaagaaaataccgaaaaaataataacatactGTATTTCGAAC
CCGTGCGACAGGATATGTAGATAGACTTAAGGCCGTCCATTATTCATTTA
GATAATGGTTCTTTACAAGCATTTTATTCAATGCATTGCCAAAGATTGCA
AGGATCAAGCAAGGATCGAGTAAAAACCATAAGTTTTTGGGccaaaatcc
ttaaaatgtaaGGGTTCAATTTTGAGACCATTATTTTTGACAACATAAAC
GGTTGTTTCCAACCGAGCGCATCCGGGATATCGAAACCTATTGTGGTTGT
GATTACTCCTGTCAAACTTTCGAAGATAGTGCATTACTTAGAatacaata
aattttaaaagatataATAATCGATCATAGTCTGAACCGTAAACCTCTAT
AGATTTTACTTCCTATATAAGAAGCTCTTATTACTAGAGGATGAACATGC
AGAAGCTTAAATCGATAGTGTTACAGTGTTGCAGTCTGGACGGAAAGTTC
AAAGTATAGAAAAAGTTTAAGGAAAGTTCGTTCTTTCAAGGCTTACAATT
GGGACGGAAACTTAATCGAAAAATAATCTAAACTAGACGGATTTCCGTAT
ATAGAGGGTAAAGATGCAACACACTGACTACTTAAAGGATAAAAGGTCTG
GATCTAGACAAACACAGATCATATCATCGCACATCGTACATCATAATGGT
CGATACTAGTATTTTATCAGTAGATTTAAGATCAAAAACTAGAGATGGTT
ATTGCATACAGTGAGTAACCCTTTGAAAAACAGATATGCATAATATAGCG
GAAAACATATCCTGTGCAGACCTAGGGCGTCTGTTTTATATAAATAAagt
aaggcgagaccaatttaatatgttgttctacgggcccgaccgaccctatt
tttgctaaaatcaaaaaaaaataataatatcgaatttccactacaatatg
tTTTATacactacagttgacgctctctaattcgacgttctactattcgtt
tggctcctttattcgatgaaatttaaagtccccgtcaacaagaaactctc
gtaaacgacgctcccttattcgatgaaaatccaattccccttgaagatcg
aattagagagcgtcaactgtagttatttgtaagaattaaacttgaataaa
gctgaaaattaattcaagaagttgaaaaatcataaaaagcattcaataca
ctaaaattttattaagatcttcatcgaagataaaaaacaaagtgaatttt
ttatccaaatactttttggaaaattttctccttaccaaccctgataaatg
aaaaatttattcataatttgccgaccgaccgacccatatttttcgaacga
tctgtccgtagaacaacaaattgaattggtctcgcctaaagtACAAAAAT
ATTGATTGTAATGTAAAGTCTTTAGCGATACAATCCACAACCAAAGTAAG
AAAAACTGGCTTATCTTTTGAGAGAATTCGAATCAGAGAGAGACTTTGTA
CTCCTTGAGAATAATttaagcgtacaaactttcacgagcagaaactttcg
cgaggtcgaaaaatcgcgaaatctacgacatttactttcgcgaatttgac
aaaaaaattttttcgcgaacataaactttcgcggatGAGGTATATTTTTA
GTAGAAAATTCAAGTTTTCGGTGCATGAAACTAGTGTTTCGATCGTTCAA
ATGAACTCAAAACACAATTGATGGACTTTAGCATAATATCTACACTAAAT
TTTATCCTTGTTATCATCaaagaggaaaatttgagtaaaatttcttttca
gatttttttcgcgagcataaacctTCGCAAATTACCctctcaagaatttt
caaagacatttactttcgcgaaaaggactactgctcgcaaaagtttgtac
gcctaaagtatgttcattttattttccatctttcttggatttttttatat
ttgaacacTCCACTcctaaatatcttttcaacgagcacaaaatcacTATG
TAATTGGAAGTCTTTCAAACATTTCAGGCTTTTTTGTTCCCGCTGAAGAT
TATTGTCAGAAAGACTGAACGTATTTAAAAGAAAGCATTTTAAGGGATGA
AATACAACCACCATATGCAACATAATTATATCATAATTTTAATTCGGTAA
TCAATGGTTACAAGGCGTGTCAATGCACCAATCGTTAAATTTGTTTTCCA
ACCATAACACATATTCGTTCGGTAAAACATCACGTCCTTCTAAAATATGG
TGGAGATAATGTGTACTGACCTTACGGAGAGAATCGTCTGTAACCAAGGC
AACATAAGTCGTAGCCTCAACTTTTGTCCCATTCGATAATTCTACTTGGA
TTTTCCGTCTCTCGTAAAGCCCATTATCAACTTCTTCAAATGTATCCAAT
GTAGATAGACCTTTCTCGTTACATCGATATAAAACACCATACACATGTGC
ATCATCCATTTGACAAATATTTGCAGCAGTAAACCCTTCACCTAGAGACA
TATTTAACTTGAACTTGTATCCGTCTAGTTTAGCAACTTGTCGATCAGTA
AAATCAACTTTCCTATCTGTCATTCGTTGTTGGTTCATGTTAGAACCGTA
CGAAAAATACCATAAATCAAGAGTATCATCTGCCATTTTTTTggttatta
atttttgtttactg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050711-exon-scaffold_185-1491911889:29824..29825 | TCONS_00050711-exon-scaffold_185-1491911889:29824..29825 | Clytia hemisphaerica | exon |
| TCONS_00050711-exon-scaffold_185-1510915933:29824..29825 | TCONS_00050711-exon-scaffold_185-1510915933:29824..29825 | Clytia hemisphaerica | exon |
| TCONS_00050711-exon-scaffold_185-1575043694:29824..29825 | TCONS_00050711-exon-scaffold_185-1575043694:29824..29825 | Clytia hemisphaerica | exon |
| TCONS_00050711-exon-scaffold_185-1491911889:32502..32937 | TCONS_00050711-exon-scaffold_185-1491911889:32502..32937 | Clytia hemisphaerica | exon |
| TCONS_00050711-exon-scaffold_185-1510915933:32502..32937 | TCONS_00050711-exon-scaffold_185-1510915933:32502..32937 | Clytia hemisphaerica | exon |
| TCONS_00050711-exon-scaffold_185-1575043694:32502..32937 | TCONS_00050711-exon-scaffold_185-1575043694:32502..32937 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:29824..32937 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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