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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050712 ID=TCONS_00050712|Name=TCONS_00050712|organism=Clytia hemisphaerica|type=transcript|length=1575bp
cttgaagatcgaattagagagcgtcaactgtagttatttgtaagaattaa
acttgaataaagctgaaaattaattcaagaagttgaaaaatcataaaaag
cattcaatacactaaaattttattaagatcttcatcgaagataaaaaaca
aagtgaattttttatccaaatactttttggaaaattttctccttaccaac
cctgataaatgaaaaatttattcataatttgccgaccgaccgacccatat
ttttcgaacgatctgtccgtagaacaacaaattgaattggtctcgcctaa
agtACAAAAATATTGATTGTAATGTAAAGTCTTTAGCGATACAATCCACA
ACCAAAGTAAGAAAAACTGGCTTATCTTTTGAGAGAATTCGAATCAGAGA
GAGACTTTGTACTCCTTGAGAATAATttaagcgtacaaactttcacgagc
agaaactttcgcgaggtcgaaaaatcgcgaaatctacgacatttactttc
gcgaatttgacaaaaaaattttttcgcgaacataaactttcgcggatGAG
GTATATTTTTAGTAGAAAATTCAAGTTTTCGGTGCATGAAACTAGTGTTT
CGATCGTTCAAATGAACTCAAAACACAATTGATGGACTTTAGCATAATAT
CTACACTAAATTTTATCCTTGTTATCATCaaagaggaaaatttgagtaaa
atttcttttcagatttttttcgcgagcataaacctTCGCAAATTACCctc
tcaagaattttcaaagacatttactttcgcgaaaaggactactgctcgca
aaagtttgtacgcctaaagtatgttcattttattttccatctttcttgga
tttttttatatttgaacacTCCACTcctaaatatcttttcaacgagcaca
aaatcacTATGTAATTGGAAGTCTTTCAAACATTTCAGGCTTTTTTGTTC
CCGCTGAAGATTATTGTCAGAAAGACTGAACGTATTTAAAAGAAAGCATT
TTAAGGGATGAAATACAACCACCATATGCAACATAATTATATCATAATTT
TAATTCGGTAATCAATGGTTACAAGGCGTGTCAATGCACCAATCGTTAAA
TTTGTTTTCCAACCATAACACATATTCGTTCGGTAAAACATCACGTCCTT
CTAAAATATGGTGGAGATAATGTGTACTGACCTTACGGAGAGAATCGTCT
GTAACCAAGGCAACATAAGTCGTAGCCTCAACTTTTGTCCCATTCGATAA
TTCTACTTGGATTTTCCGTCTCTCGTAAAGCCCATTATCAACTTCTTCAA
ATGTATCCAATGTAGATAGACCTTTCTCGTTACATCGATATAAAACACCA
TACACATGTGCATCATCCATTTGACAAATATTTGCAGCAGTAAACCCTTC
ACCTAGAGACATATTTAACTTGAACTTGTATCCGTCTAGTTTAGCAACTT
GTCGATCAGTAAAATCAACTTTCCTATCTGTCATTCGTTGTTGGTTCATG
TTAGAACCGTACGAAAAATACCATAAATCAAGAGTATCATCTGCCATTTT
TTTggttattaatttttgtttactg Run BLAST on NCBI transcript from alignment at scaffold_185:31363..32937+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050712 ID=TCONS_00050712|Name=TCONS_00050712|organism=Clytia hemisphaerica|type=transcript|length=1575bp|location=Sequence derived from alignment at scaffold_185:31363..32937+ (Clytia hemisphaerica)
cttgaagatcgaattagagagcgtcaactgtagttatttgtaagaattaa
acttgaataaagctgaaaattaattcaagaagttgaaaaatcataaaaag
cattcaatacactaaaattttattaagatcttcatcgaagataaaaaaca
aagtgaattttttatccaaatactttttggaaaattttctccttaccaac
cctgataaatgaaaaatttattcataatttgccgaccgaccgacccatat
ttttcgaacgatctgtccgtagaacaacaaattgaattggtctcgcctaa
agtACAAAAATATTGATTGTAATGTAAAGTCTTTAGCGATACAATCCACA
ACCAAAGTAAGAAAAACTGGCTTATCTTTTGAGAGAATTCGAATCAGAGA
GAGACTTTGTACTCCTTGAGAATAATttaagcgtacaaactttcacgagc
agaaactttcgcgaggtcgaaaaatcgcgaaatctacgacatttactttc
gcgaatttgacaaaaaaattttttcgcgaacataaactttcgcggatGAG
GTATATTTTTAGTAGAAAATTCAAGTTTTCGGTGCATGAAACTAGTGTTT
CGATCGTTCAAATGAACTCAAAACACAATTGATGGACTTTAGCATAATAT
CTACACTAAATTTTATCCTTGTTATCATCaaagaggaaaatttgagtaaa
atttcttttcagatttttttcgcgagcataaacctTCGCAAATTACCctc
tcaagaattttcaaagacatttactttcgcgaaaaggactactgctcgca
aaagtttgtacgcctaaagtatgttcattttattttccatctttcttgga
tttttttatatttgaacacTCCACTcctaaatatcttttcaacgagcaca
aaatcacTATGTAATTGGAAGTCTTTCAAACATTTCAGGCTTTTTTGTTC
CCGCTGAAGATTATTGTCAGAAAGACTGAACGTATTTAAAAGAAAGCATT
TTAAGGGATGAAATACAACCACCATATGCAACATAATTATATCATAATTT
TAATTCGGTAATCAATGGTTACAAGGCGTGTCAATGCACCAATCGTTAAA
TTTGTTTTCCAACCATAACACATATTCGTTCGGTAAAACATCACGTCCTT
CTAAAATATGGTGGAGATAATGTGTACTGACCTTACGGAGAGAATCGTCT
GTAACCAAGGCAACATAAGTCGTAGCCTCAACTTTTGTCCCATTCGATAA
TTCTACTTGGATTTTCCGTCTCTCGTAAAGCCCATTATCAACTTCTTCAA
ATGTATCCAATGTAGATAGACCTTTCTCGTTACATCGATATAAAACACCA
TACACATGTGCATCATCCATTTGACAAATATTTGCAGCAGTAAACCCTTC
ACCTAGAGACATATTTAACTTGAACTTGTATCCGTCTAGTTTAGCAACTT
GTCGATCAGTAAAATCAACTTTCCTATCTGTCATTCGTTGTTGGTTCATG
TTAGAACCGTACGAAAAATACCATAAATCAAGAGTATCATCTGCCATTTT
TTTggttattaatttttgtttactg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050712-exon-scaffold_185-1491911889:31363..32937 | TCONS_00050712-exon-scaffold_185-1491911889:31363..32937 | Clytia hemisphaerica | exon |
| TCONS_00050712-exon-scaffold_185-1510915933:31363..32937 | TCONS_00050712-exon-scaffold_185-1510915933:31363..32937 | Clytia hemisphaerica | exon |
| TCONS_00050712-exon-scaffold_185-1575043694:31363..32937 | TCONS_00050712-exon-scaffold_185-1575043694:31363..32937 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:31363..32937 + |
Blast
The following BLAST results are available for this feature:
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