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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050715 ID=TCONS_00050715|Name=TCONS_00050715|organism=Clytia hemisphaerica|type=transcript|length=1921bp
GAATGGATATATGTCGATTGTGGCGAATGTGTGTAATGTTTTTCAATGGA
AGAAGGAGAAAGGAAGAAAGGAAAATGTCTTTCGATATTGATATTATGAG
TCAGAAGCAAATGGTCAAAATGCTCAATTTCCGGGTCCAGATTTTCTACG
TAGCAATTATCACCGTCATTATATGTTTCGGGAATCTGATCGCTGTTGCT
CATTACTCGCATCCCGAATACGCCGGTCCGGCCACGAAATACAATACGTC
TTACCAGGGAATCGAAGCTATCGTCTTTAACCGTCGAGACTGGGTTCATT
ACGCCGGTAACCTCTTTTCGATACTCACATCCGTTCCGTTGTTATTCGTC
ATAACGCCAAAAGTCGAGATTAACCGGCAACGGAGGTTGATTTTGTTTCC
GTATGCCGTTTGTTCAGCATTGATGGTTGTTGCACCGGAATACATCATCT
TCGGGAACGTGAAAATGGATTCCAGTTTTGTTGCCATTAACTATGGTCCT
CTAATGGATGTCACTGAAGCGCGCAGCGAACCAAATCGGAACAACCATGC
TTTAAAATCGGGGATAATCGGTTTTAACGATACGATCGTGTCGAATCGGG
TTAACAAGGATAGAGAATCGGAAAACATCGGTTATTTTGATTCAAACGGT
AGCAACACATCTCTGAAGGACCTGAAattgaacaaaacaaaaagtgaaaa
aaccaatgcaaatttgaacaaaaagctCACCGAAAACAAATCCACGCTGA
GCGCGATTCCACGATCAATCGAATCAAATCGCAAACTGAATCGGGAGCGT
ATCAGCTGTTTCGTCATATACCAATTATGGATTATTTTACGAGCTGTGTT
TTTCGTTATCGTCTGCCGGTACTTTTACTTCTTACAATGGCTAGCCACCA
CCCACCGACCACAACCGAAGCGCTCCAATGCTACTAGAAGAGGGATCATC
GATATACAGGTCAATGGCAAAGCTGAATATGAGCATTTCTTGTTGTGAGA
AAAATGGAGACGAGGTGCTAGGCTAGTTAACTAGACTCGTTTCCATCTTT
TGAAACCAAACTTGTACGTGAAAAGGATGATTTTGTTTCCATGGTCACCT
ACCGGCAAAAGAGACCTACAGTTGTTCTCTACATGTTGCAATGGGCCATT
TAACATGTGTCAACATGAACAGACATCAACAGTAGAAGACAAATAGACTT
TTCGACTCACATACACTTAAAGTCAAAATCCCAAAATCGAACAATAATAC
TAGATTATTCTTGTAAGAAACTTGCATAAAACAATTCTTTCCAATACTAA
ATGGTAGGCTTCAGTTGGTTGTGATAAGACTATGTTCTGGTTATCGTCTG
AAGAATTTTTCTAACTATTTAGCAGTGAATATTCTACCATATGTCGAAAG
CAGTGAGAAAGGAACTTATATCAATTATGTTGTAACTAAATTTCACAAAC
TCGCAGTCCACCGTGCGGCCACTATTAATGGTGCATATATTTTGGGTCAT
TATTGCAATGTTATTATATAGACAGGTATGCAAAAATAGTGGCATTTTCA
ATCATATAACTTTTTATCTTTCCAGGCTATGCTAAGATTCTTAGGAGAAT
TTCGCTGAACTTGATAGCTTACAGGAACAAGTGTAGTCAACAGACTGAGC
ATCGGACTAAGGTGGACAGAACATAACTTGAAAgatttcaaatacatttt
cttttacagaaacgaatcattttttatttactaattttcaagaaaaagtt
aAATTATACCCAGTGCATCAAAATATACCCATGCTCGTATGCTTCGTACG
AACTATCCTTATTTTTCCTATTTTGCAGATATCTTTTATAATTACTACTT
TATAAACCAAGGTCTACCTTGCCATTATTCTctctaaggcgagaccaatt
tgattggttgtttTACAGGCC Run BLAST on NCBI transcript from alignment at scaffold_185:65591..72088+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050715 ID=TCONS_00050715|Name=TCONS_00050715|organism=Clytia hemisphaerica|type=transcript|length=6498bp|location=Sequence derived from alignment at scaffold_185:65591..72088+ (Clytia hemisphaerica)
GAATGGATATATGTCGATTGTGGCGAATGTGTGTAATGTTTTTCAATGGA
AGAAGGAGAAAGGAAGAAAGGAAAATGTCTTTCGATATTGATATTATGAG
TGAGTGTGATTTGGTTTTCCAACTACCAGGTTTCTTTTTTGACTATATAA
ATGAACCCAAAGCCTACATTTAGAGCAACTAGTATTATTCCCTCAACATT
CTTGTTCAGCTAACacgctacacgtttttttttttataagaacgtcaaaa
attttcgaagccttcggatgttcttagttttttggatttgaagcctaaaa
atgttcttaaaatgttcttattttcggctttttttgagcattttgatgta
atttttaagaaaatgcatgtttttaagtctccaaagccttataatgttct
tagaatgttcttaaatttttgggcctcgaagccttatgttcttatatagt
ttgttcttataaaaaaaaaacgtgtactgatCCAAGAGGTTTTGACGGAT
GACTGAAGTTAATAAACCTGTTGGTTATTAATATGGCAGATATTTAGCCT
GAACTGAATTTAAGGAACGAGTGAAactaatttggcggatggagaAAGAA
ATTAATTGTGGCGCATTTTGGGTAAATCCGCGAAATTCCCTTTCtgctaa
aatttcttcttttattaaaggttttgttttacataagtgttcccgcttca
tatcagacacatatttcattatcaggacagtgtctgtctattgttatatt
atgctgatatgaacaaaaaaatgtttttctttccctctttctgatcatct
tgctccacatccgtaccaatcaaatttgaaaaagcttgttaaataaaatt
gacgagtaagcaaacgatatcactcttatttaaaaacaaaacctttaagg
taTTTCAAAACACTATCAGAACAATATTTACAGTACAAttgaaagaggaa
aaaaagttaaaaggttCAAACCAGTTAAAAAAAACGCAATAATGTAACCC
TTTTGTTTCTCTCCCCCTATTCTAGTGTCATTTAAAAAACCACtgaaatt
gttattttcttccaaaattATGAAATCAAGTCTTTCTTATTTCGAGAGAA
GTTGAAGAAAACTAAGGTATTATTTTTAAGTTatcatttttcaggttttt
ttgtGTGTTGgaagaaaaatcttgaaattattttttcaattttaaactgA
CTGACgtagaaaaacttttaaattattGAGACGAAGTAAAGAAgactatt
ttgtttttaatttttggttcTGTAACTTGACAGACATTctgtaatttcaa
aaaaaaactattttgtttttaatttttggttcTGTAGCTTGACAGACATA
CTGTAATTTCAAGAATTCGCTTTTTAGCGACATATCATTTAAATAGTAAG
TATCGAAGTTCGAACCCGCCCCTTCTTTTTTCAAAGGGTACGCACCCTCC
CCAATCCGAAGTAGGTGAGGAGGGAATAGATATAAAGCCCTTTCTTTTTC
TGGTTAGAATAATgtattttctgtattttttttttgtattttaggtACTT
TGTACTCTATACTAAGgttacgtttttttttaaagaacgttTTAATTGGA
GCTGAGCCTGGATGTTCTTTTGAGAATTAAAATTCTTTTAGAcaattttg
agcctaaaatattcttaaatgttcttataaactgggttctaataacaAAA
ACAACGTGCAGCCCAGCagtttaaaaagtcaaaattgacaaaaagttttc
aagattcAAGTGCTCTTTTGGGTGAAATCTTTTGTCGAAGTTTAAAGCTA
TGTCAAAACACACAAAGCTAAAAAATGGATACATCATTTTCCCCAGGAAG
ATATAcataaaaattattgaaaattattgaaaaatatgtgagatcaaatt
ttgcaaaaaggaAATCGTAATATactaaaatgatttcaaaacaagacaCG
AAATAGAAACTTTCTCGTTcttgttcattttttcaaaaattttcaatctt
cctttttttatatattttcaatttccCATTTGGAAATTCAATTTATGACA
CATTAAGGTAGAGGGCGATCTTGAGAAAAGTAACAAATTTGATGCAGTAT
GTAGTTAagcccagccggcacacaacgtcaaaacaacgtctatttgacat
tcataacgtccaaataacgttatttgaacgttaaaacaacggacagaaag
cctaaaataaaacTTCTCGCTGAATGAAGAACAACACAAGAACAATTTGA
AGCGGAATAAGAACAACTGAGCCTCAACAAGAATttactagttcttataa
aaaagaagaagtatTTTAGGGAGGATTTCAGTCATccacaatttatttta
tttgtgtTGTAGTCTGTTGAAATTATTTCGTCAGTTAGAATAAAATAAAG
GTTTTTTCTCGATTCTCTTTGAGCATCATTAGAATCTTGCTTAAAAAGGT
ATTGTTGTTTTGCTTGCAATTAATTTTATTGAAGATTTCTAaataaattg
cttaaaattatCTAAATTATCTTCACCTTATTTTTTATAGCaattgtcca
ttttcctaagaaattgggtgttttggagtccccaaagccttaaaatgttc
ttaacttgtacttaacattttggccatcgaagactTATGTTCTCATGTTC
CtaatgttattttttgttcttataataaaaaaacgtgtaattcaaGTCAT
CCAAGGGCAGATACCTTCCTCTTTGCGCCAGGTTTAAGTAAGGGTAAATA
TTTGTAGTGGAAGACAGTCGGAGACTGATTTGTTTTtcacaagaacaaac
tatatgggAAAATTatgcttcgatgaccaaaatattaagaacaagttgag
aacattttaaaagcTTTGAGGACCCTAAAACACTAAAGTAGCcacaaata
ctcacaaaatggtgaaattaagaacatgttaagaatatttttatacttaa
aattcaaaaagttaagaaaatgcgAAGACTTTAGATATTCtgagtgttct
tataaaaaacgtgtaaatatTAAGTTTATTTAAAGACATCAAATTGGTGT
CAAATAATTATTAGCTTAAacaattttgtttgaaattaaATAATTCATAT
CATATaactgttaaatttttttttcttcaatttgttaaaaaagcGAAATT
ATTCAAAAAGTCAGTAATTATTCTTTTTCGTGGATTTTATTTCTAAGCCA
TCTAGACGACTTTATGTCATGTATGGGGCAGAAGATAGTAAGTGAAGTGA
TTTTAAGTCAGTCAGGGTTGAGGAAGATTTTTTCGTTTCACTTTATGAGA
ACGAAAAAGATATTCTGAAATCCAAATTTGTtgttaaaatttgtaaatag
aGTTGTTAATAACAATTTTTAGCGACTttttgaagaagaaacaaaaacag
tACCCATGTCCCGCTGTAAATCACTGTAGATTAGTTTTCTTTTTCTGTGT
CGCAGAGGAAAAtattaataaaatgaaaaaaaacttttccattaagaaat
tacaaaataagTGTGATATTGTTAGAAAATTTATTAGattaattttgaat
caaaatcataatttgtttagttttaagttttaagttGACTTACTTCGCGA
TGAAATTGATCAAGGTTAATCTGAGTTTAAATTTTGTAGAttaattttga
cgaaaaaataCGGGACTGATGCCTCGCCATGTGACTTTTCAACCAAGTGG
TAACTTCATTTAGATTTAAATTTCTTAGATTTTTAATCTAAAGGTTAGAA
TCATAAGACTTAGGATTGACGATTTCTACTGATCCACCAAATATGCTCAT
ACAGTCAGAGGGGAGGGTATGGGTGGGCTTGGTGCTTGAACCAGTTTTAA
CTACATATGGTCAAGCCTTATCAGtaacaaagatttttgaaaagatacAT
AATCTGAATTGAATGGGCCTCTGGGAGTCCAATCTTTGgacttttcaaac
aaaaaagttttgaagattAGGAAATAGGAAGAAAACCGACAAAGAGACTC
GAGACTCCTAGATGGGAAaagaaaccacttatttcccatcagGAACGCcc
acgcgtggtttttacacaaacgctggattgaaactaaaatctatcgctag
atttcaaaaaaagcagttctcaaaaacaaaggaaccgctagatgcaatcc
gtcgtcatgatcgcagcgcgttctaggcgcgttctggatgggaaataagt
ggtttcatttcccatctaggagtctcgagtctttttcttgcttgagaaag
gttagagattctgcTCTAGTCCTCCTGGCTTAAAACTCATTCTCTCATCA
AGCcatcaaactaaaaaaaaatcatcaatcaCATATCACACTTTTTTGAA
ATCCTAGATCACGCAAGGTCACGGcattaaaattcaaatcacGTCATCGC
GCAAACCACTGACGTCTCTATAAACgtaaaaagcaataaaaagcAGATGT
GGCTGTGTAAAACCTAACATGTTTGCTTTCCTTACCTATTCATCCTAATA
AATAAATCGCCCTTCTTTCGAAACCAATTTGTTTCCAATATCGTTTCAAA
TCTCAGTTCTgtctttcttcaaaaacaaagaaaactatgatgttgttgtt
gttgttgttcgcAAGTAAGGTCTACAATGGAGTATTATGTTTTCTAATAT
TGTACATGGTTTCTTTTCCTATCCAGGTCAGAAGCAAATGGTCAAAATGC
TCAATTTCCGGGTCCAGATTTTCTACGTAGCAATTATCACCGTCATTATA
TGTTTCGGGAATCTGATCGCTGTTGCTCATTACTCGCATCCCGAATACGC
CGGTCCGGCCACGAAATACAATACGTCTTACCAGGGAATCGAAGCTATCG
TCTTTAACCGTCGAGACTGGGTTCATTACGCCGGTAACCTCTTTTCGATA
CTCACATCCGTTCCGTTGTTATTCGTCATAACGCCAAAAGTCGAGATTAA
CCGGCAACGGAGGTTGATTTTGTTTCCGTATGCCGTTTGTTCAGCATTGA
TGGTTGTTGCACCGGAATACATCATCTTCGGGAACGTGAAAATGGATTCC
AGTTTTGTTGCCATTAACTATGGTCCTCTAATGGATGTCACTGAAGCGCG
CAGCGAACCAAATCGGAACAACCATGCTTTAAAATCGGGGATAATCGGTT
TTAACGATACGATCGTGTCGAATCGGGTTAACAAGGATAGAGAATCGGAA
AACATCGGTTATTTTGATTCAAACGGTAGCAACACATCTCTGAAGGACCT
GAAattgaacaaaacaaaaagtgaaaaaaccaatgcaaatttgaacaaaa
agctCACCGAAAACAAATCCACGCTGAGCGCGATTCCACGATCAATCGAA
TCAAATCGCAAACTGAATCGGGAGCGTATCAGCTGTTTCGTCATATACCA
ATTATGGATTATTTTACGAGCTGTGTTTTTCGTTATCGTCTGCCGGTACT
TTTACTTCTTACAATGGCTAGCCACCACCCACCGACCACAACCGAAGCGC
TCCAATGCTACTAGAAGAGGGATCATCGATATACAGGTCAATGGCAAAGC
TGAATATGAGCATTTCTTGTTGTGAGAAAAATGGAGACGAGGTGCTAGGC
TAGTTAACTAGACTCGTTTCCATCTTTTGAAACCAAACTTGTACGTGAAA
AGGATGATTTTGTTTCCATGGTCACCTACCGGCAAAAGAGACCTACAGTT
GTTCTCTACATGTTGCAATGGGCCATTTAACATGTGTCAACATGAACAGA
CATCAACAGTAGAAGACAAATAGACTTTTCGACTCACATACACTTAAAGT
CAAAATCCCAAAATCGAACAATAATACTAGATTATTCTTGTAAGAAACTT
GCATAAAACAATTCTTTCCAATACTAAATGGTAGGCTTCAGTTGGTTGTG
ATAAGACTATGTTCTGGTTATCGTCTGAAGAATTTTTCTAACTATTTAGC
AGTGAATATTCTACCATATGTCGAAAGCAGTGAGAAAGGAACTTATATCA
ATTATGTTGTAACTAAATTTCACAAACTCGCAGTCCACCGTGCGGCCACT
ATTAATGGTGCATATATTTTGGGTCATTATTGCAATGTTATTATATAGAC
AGGTATGCAAAAATAGTGGCATTTTCAATCATATAACTTTTTATCTTTCC
AGGCTATGCTAAGATTCTTAGGAGAATTTCGCTGAACTTGATAGCTTACA
GGAACAAGTGTAGTCAACAGACTGAGCATCGGACTAAGGTGGACAGAACA
TAACTTGAAAgatttcaaatacattttcttttacagaaacgaatcatttt
ttatttactaattttcaagaaaaagttaAATTATACCCAGTGCATCAAAA
TATACCCATGCTCGTATGCTTCGTACGAACTATCCTTATTTTTCCTATTT
TGCAGATATCTTTTATAATTACTACTTTATAAACCAAGGTCTACCTTGCC
ATTATTCTctctaaggcgagaccaatttgattggttgtttTACAGGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050715-exon-scaffold_185-1491911889:65591..65689 | TCONS_00050715-exon-scaffold_185-1491911889:65591..65689 | Clytia hemisphaerica | exon |
| TCONS_00050715-exon-scaffold_185-1510915933:65591..65689 | TCONS_00050715-exon-scaffold_185-1510915933:65591..65689 | Clytia hemisphaerica | exon |
| TCONS_00050715-exon-scaffold_185-1575043694:65591..65689 | TCONS_00050715-exon-scaffold_185-1575043694:65591..65689 | Clytia hemisphaerica | exon |
| TCONS_00050715-exon-scaffold_185-1491911889:70267..72088 | TCONS_00050715-exon-scaffold_185-1491911889:70267..72088 | Clytia hemisphaerica | exon |
| TCONS_00050715-exon-scaffold_185-1510915933:70267..72088 | TCONS_00050715-exon-scaffold_185-1510915933:70267..72088 | Clytia hemisphaerica | exon |
| TCONS_00050715-exon-scaffold_185-1575043694:70267..72088 | TCONS_00050715-exon-scaffold_185-1575043694:70267..72088 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:65591..72088 + |
Blast
The following BLAST results are available for this feature:
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