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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050716 ID=TCONS_00050716|Name=TCONS_00050716|organism=Clytia hemisphaerica|type=transcript|length=1840bp
CGACATATCATTTAAATAGTCAGAAGCAAATGGTCAAAATGCTCAATTTC
CGGGTCCAGATTTTCTACGTAGCAATTATCACCGTCATTATATGTTTCGG
GAATCTGATCGCTGTTGCTCATTACTCGCATCCCGAATACGCCGGTCCGG
CCACGAAATACAATACGTCTTACCAGGGAATCGAAGCTATCGTCTTTAAC
CGTCGAGACTGGGTTCATTACGCCGGTAACCTCTTTTCGATACTCACATC
CGTTCCGTTGTTATTCGTCATAACGCCAAAAGTCGAGATTAACCGGCAAC
GGAGGTTGATTTTGTTTCCGTATGCCGTTTGTTCAGCATTGATGGTTGTT
GCACCGGAATACATCATCTTCGGGAACGTGAAAATGGATTCCAGTTTTGT
TGCCATTAACTATGGTCCTCTAATGGATGTCACTGAAGCGCGCAGCGAAC
CAAATCGGAACAACCATGCTTTAAAATCGGGGATAATCGGTTTTAACGAT
ACGATCGTGTCGAATCGGGTTAACAAGGATAGAGAATCGGAAAACATCGG
TTATTTTGATTCAAACGGTAGCAACACATCTCTGAAGGACCTGAAattga
acaaaacaaaaagtgaaaaaaccaatgcaaatttgaacaaaaagctCACC
GAAAACAAATCCACGCTGAGCGCGATTCCACGATCAATCGAATCAAATCG
CAAACTGAATCGGGAGCGTATCAGCTGTTTCGTCATATACCAATTATGGA
TTATTTTACGAGCTGTGTTTTTCGTTATCGTCTGCCGGTACTTTTACTTC
TTACAATGGCTAGCCACCACCCACCGACCACAACCGAAGCGCTCCAATGC
TACTAGAAGAGGGATCATCGATATACAGGTCAATGGCAAAGCTGAATATG
AGCATTTCTTGTTGTGAGAAAAATGGAGACGAGGTGCTAGGCTAGTTAAC
TAGACTCGTTTCCATCTTTTGAAACCAAACTTGTACGTGAAAAGGATGAT
TTTGTTTCCATGGTCACCTACCGGCAAAAGAGACCTACAGTTGTTCTCTA
CATGTTGCAATGGGCCATTTAACATGTGTCAACATGAACAGACATCAACA
GTAGAAGACAAATAGACTTTTCGACTCACATACACTTAAAGTCAAAATCC
CAAAATCGAACAATAATACTAGATTATTCTTGTAAGAAACTTGCATAAAA
CAATTCTTTCCAATACTAAATGGTAGGCTTCAGTTGGTTGTGATAAGACT
ATGTTCTGGTTATCGTCTGAAGAATTTTTCTAACTATTTAGCAGTGAATA
TTCTACCATATGTCGAAAGCAGTGAGAAAGGAACTTATATCAATTATGTT
GTAACTAAATTTCACAAACTCGCAGTCCACCGTGCGGCCACTATTAATGG
TGCATATATTTTGGGTCATTATTGCAATGTTATTATATAGACAGGTATGC
AAAAATAGTGGCATTTTCAATCATATAACTTTTTATCTTTCCAGGCTATG
CTAAGATTCTTAGGAGAATTTCGCTGAACTTGATAGCTTACAGGAACAAG
TGTAGTCAACAGACTGAGCATCGGACTAAGGTGGACAGAACATAACTTGA
AAgatttcaaatacattttcttttacagaaacgaatcattttttatttac
taattttcaagaaaaagttaAATTATACCCAGTGCATCAAAATATACCCA
TGCTCGTATGCTTCGTACGAACTATCCTTATTTTTCCTATTTTGCAGATA
TCTTTTATAATTACTACTTTATAAACCAAGGTCTACCTTGCCATTATTCT
ctctaaggcgagaccaatttgattggttgtttTACAGGCC Run BLAST on NCBI transcript from alignment at scaffold_185:66968..72088+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050716 ID=TCONS_00050716|Name=TCONS_00050716|organism=Clytia hemisphaerica|type=transcript|length=5121bp|location=Sequence derived from alignment at scaffold_185:66968..72088+ (Clytia hemisphaerica)
CGACATATCATTTAAATAGTAAGTATCGAAGTTCGAACCCGCCCCTTCTT
TTTTCAAAGGGTACGCACCCTCCCCAATCCGAAGTAGGTGAGGAGGGAAT
AGATATAAAGCCCTTTCTTTTTCTGGTTAGAATAATgtattttctgtatt
ttttttttgtattttaggtACTTTGTACTCTATACTAAGgttacgttttt
ttttaaagaacgttTTAATTGGAGCTGAGCCTGGATGTTCTTTTGAGAAT
TAAAATTCTTTTAGAcaattttgagcctaaaatattcttaaatgttctta
taaactgggttctaataacaAAAACAACGTGCAGCCCAGCagtttaaaaa
gtcaaaattgacaaaaagttttcaagattcAAGTGCTCTTTTGGGTGAAA
TCTTTTGTCGAAGTTTAAAGCTATGTCAAAACACACAAAGCTAAAAAATG
GATACATCATTTTCCCCAGGAAGATATAcataaaaattattgaaaattat
tgaaaaatatgtgagatcaaattttgcaaaaaggaAATCGTAATATacta
aaatgatttcaaaacaagacaCGAAATAGAAACTTTCTCGTTcttgttca
ttttttcaaaaattttcaatcttcctttttttatatattttcaatttccC
ATTTGGAAATTCAATTTATGACACATTAAGGTAGAGGGCGATCTTGAGAA
AAGTAACAAATTTGATGCAGTATGTAGTTAagcccagccggcacacaacg
tcaaaacaacgtctatttgacattcataacgtccaaataacgttatttga
acgttaaaacaacggacagaaagcctaaaataaaacTTCTCGCTGAATGA
AGAACAACACAAGAACAATTTGAAGCGGAATAAGAACAACTGAGCCTCAA
CAAGAATttactagttcttataaaaaagaagaagtatTTTAGGGAGGATT
TCAGTCATccacaatttattttatttgtgtTGTAGTCTGTTGAAATTATT
TCGTCAGTTAGAATAAAATAAAGGTTTTTTCTCGATTCTCTTTGAGCATC
ATTAGAATCTTGCTTAAAAAGGTATTGTTGTTTTGCTTGCAATTAATTTT
ATTGAAGATTTCTAaataaattgcttaaaattatCTAAATTATCTTCACC
TTATTTTTTATAGCaattgtccattttcctaagaaattgggtgttttgga
gtccccaaagccttaaaatgttcttaacttgtacttaacattttggccat
cgaagactTATGTTCTCATGTTCCtaatgttattttttgttcttataata
aaaaaacgtgtaattcaaGTCATCCAAGGGCAGATACCTTCCTCTTTGCG
CCAGGTTTAAGTAAGGGTAAATATTTGTAGTGGAAGACAGTCGGAGACTG
ATTTGTTTTtcacaagaacaaactatatgggAAAATTatgcttcgatgac
caaaatattaagaacaagttgagaacattttaaaagcTTTGAGGACCCTA
AAACACTAAAGTAGCcacaaatactcacaaaatggtgaaattaagaacat
gttaagaatatttttatacttaaaattcaaaaagttaagaaaatgcgAAG
ACTTTAGATATTCtgagtgttcttataaaaaacgtgtaaatatTAAGTTT
ATTTAAAGACATCAAATTGGTGTCAAATAATTATTAGCTTAAacaatttt
gtttgaaattaaATAATTCATATCATATaactgttaaatttttttttctt
caatttgttaaaaaagcGAAATTATTCAAAAAGTCAGTAATTATTCTTTT
TCGTGGATTTTATTTCTAAGCCATCTAGACGACTTTATGTCATGTATGGG
GCAGAAGATAGTAAGTGAAGTGATTTTAAGTCAGTCAGGGTTGAGGAAGA
TTTTTTCGTTTCACTTTATGAGAACGAAAAAGATATTCTGAAATCCAAAT
TTGTtgttaaaatttgtaaatagaGTTGTTAATAACAATTTTTAGCGACT
ttttgaagaagaaacaaaaacagtACCCATGTCCCGCTGTAAATCACTGT
AGATTAGTTTTCTTTTTCTGTGTCGCAGAGGAAAAtattaataaaatgaa
aaaaaacttttccattaagaaattacaaaataagTGTGATATTGTTAGAA
AATTTATTAGattaattttgaatcaaaatcataatttgtttagttttaag
ttttaagttGACTTACTTCGCGATGAAATTGATCAAGGTTAATCTGAGTT
TAAATTTTGTAGAttaattttgacgaaaaaataCGGGACTGATGCCTCGC
CATGTGACTTTTCAACCAAGTGGTAACTTCATTTAGATTTAAATTTCTTA
GATTTTTAATCTAAAGGTTAGAATCATAAGACTTAGGATTGACGATTTCT
ACTGATCCACCAAATATGCTCATACAGTCAGAGGGGAGGGTATGGGTGGG
CTTGGTGCTTGAACCAGTTTTAACTACATATGGTCAAGCCTTATCAGtaa
caaagatttttgaaaagatacATAATCTGAATTGAATGGGCCTCTGGGAG
TCCAATCTTTGgacttttcaaacaaaaaagttttgaagattAGGAAATAG
GAAGAAAACCGACAAAGAGACTCGAGACTCCTAGATGGGAAaagaaacca
cttatttcccatcagGAACGCccacgcgtggtttttacacaaacgctgga
ttgaaactaaaatctatcgctagatttcaaaaaaagcagttctcaaaaac
aaaggaaccgctagatgcaatccgtcgtcatgatcgcagcgcgttctagg
cgcgttctggatgggaaataagtggtttcatttcccatctaggagtctcg
agtctttttcttgcttgagaaaggttagagattctgcTCTAGTCCTCCTG
GCTTAAAACTCATTCTCTCATCAAGCcatcaaactaaaaaaaaatcatca
atcaCATATCACACTTTTTTGAAATCCTAGATCACGCAAGGTCACGGcat
taaaattcaaatcacGTCATCGCGCAAACCACTGACGTCTCTATAAACgt
aaaaagcaataaaaagcAGATGTGGCTGTGTAAAACCTAACATGTTTGCT
TTCCTTACCTATTCATCCTAATAAATAAATCGCCCTTCTTTCGAAACCAA
TTTGTTTCCAATATCGTTTCAAATCTCAGTTCTgtctttcttcaaaaaca
aagaaaactatgatgttgttgttgttgttgttcgcAAGTAAGGTCTACAA
TGGAGTATTATGTTTTCTAATATTGTACATGGTTTCTTTTCCTATCCAGG
TCAGAAGCAAATGGTCAAAATGCTCAATTTCCGGGTCCAGATTTTCTACG
TAGCAATTATCACCGTCATTATATGTTTCGGGAATCTGATCGCTGTTGCT
CATTACTCGCATCCCGAATACGCCGGTCCGGCCACGAAATACAATACGTC
TTACCAGGGAATCGAAGCTATCGTCTTTAACCGTCGAGACTGGGTTCATT
ACGCCGGTAACCTCTTTTCGATACTCACATCCGTTCCGTTGTTATTCGTC
ATAACGCCAAAAGTCGAGATTAACCGGCAACGGAGGTTGATTTTGTTTCC
GTATGCCGTTTGTTCAGCATTGATGGTTGTTGCACCGGAATACATCATCT
TCGGGAACGTGAAAATGGATTCCAGTTTTGTTGCCATTAACTATGGTCCT
CTAATGGATGTCACTGAAGCGCGCAGCGAACCAAATCGGAACAACCATGC
TTTAAAATCGGGGATAATCGGTTTTAACGATACGATCGTGTCGAATCGGG
TTAACAAGGATAGAGAATCGGAAAACATCGGTTATTTTGATTCAAACGGT
AGCAACACATCTCTGAAGGACCTGAAattgaacaaaacaaaaagtgaaaa
aaccaatgcaaatttgaacaaaaagctCACCGAAAACAAATCCACGCTGA
GCGCGATTCCACGATCAATCGAATCAAATCGCAAACTGAATCGGGAGCGT
ATCAGCTGTTTCGTCATATACCAATTATGGATTATTTTACGAGCTGTGTT
TTTCGTTATCGTCTGCCGGTACTTTTACTTCTTACAATGGCTAGCCACCA
CCCACCGACCACAACCGAAGCGCTCCAATGCTACTAGAAGAGGGATCATC
GATATACAGGTCAATGGCAAAGCTGAATATGAGCATTTCTTGTTGTGAGA
AAAATGGAGACGAGGTGCTAGGCTAGTTAACTAGACTCGTTTCCATCTTT
TGAAACCAAACTTGTACGTGAAAAGGATGATTTTGTTTCCATGGTCACCT
ACCGGCAAAAGAGACCTACAGTTGTTCTCTACATGTTGCAATGGGCCATT
TAACATGTGTCAACATGAACAGACATCAACAGTAGAAGACAAATAGACTT
TTCGACTCACATACACTTAAAGTCAAAATCCCAAAATCGAACAATAATAC
TAGATTATTCTTGTAAGAAACTTGCATAAAACAATTCTTTCCAATACTAA
ATGGTAGGCTTCAGTTGGTTGTGATAAGACTATGTTCTGGTTATCGTCTG
AAGAATTTTTCTAACTATTTAGCAGTGAATATTCTACCATATGTCGAAAG
CAGTGAGAAAGGAACTTATATCAATTATGTTGTAACTAAATTTCACAAAC
TCGCAGTCCACCGTGCGGCCACTATTAATGGTGCATATATTTTGGGTCAT
TATTGCAATGTTATTATATAGACAGGTATGCAAAAATAGTGGCATTTTCA
ATCATATAACTTTTTATCTTTCCAGGCTATGCTAAGATTCTTAGGAGAAT
TTCGCTGAACTTGATAGCTTACAGGAACAAGTGTAGTCAACAGACTGAGC
ATCGGACTAAGGTGGACAGAACATAACTTGAAAgatttcaaatacatttt
cttttacagaaacgaatcattttttatttactaattttcaagaaaaagtt
aAATTATACCCAGTGCATCAAAATATACCCATGCTCGTATGCTTCGTACG
AACTATCCTTATTTTTCCTATTTTGCAGATATCTTTTATAATTACTACTT
TATAAACCAAGGTCTACCTTGCCATTATTCTctctaaggcgagaccaatt
tgattggttgtttTACAGGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050716-exon-scaffold_185-1491911889:66968..66985 | TCONS_00050716-exon-scaffold_185-1491911889:66968..66985 | Clytia hemisphaerica | exon |
| TCONS_00050716-exon-scaffold_185-1510915933:66968..66985 | TCONS_00050716-exon-scaffold_185-1510915933:66968..66985 | Clytia hemisphaerica | exon |
| TCONS_00050716-exon-scaffold_185-1575043694:66968..66985 | TCONS_00050716-exon-scaffold_185-1575043694:66968..66985 | Clytia hemisphaerica | exon |
| TCONS_00050716-exon-scaffold_185-1491911889:70267..72088 | TCONS_00050716-exon-scaffold_185-1491911889:70267..72088 | Clytia hemisphaerica | exon |
| TCONS_00050716-exon-scaffold_185-1510915933:70267..72088 | TCONS_00050716-exon-scaffold_185-1510915933:70267..72088 | Clytia hemisphaerica | exon |
| TCONS_00050716-exon-scaffold_185-1575043694:70267..72088 | TCONS_00050716-exon-scaffold_185-1575043694:70267..72088 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:66968..72088 + |
Blast
The following BLAST results are available for this feature:
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