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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050717 ID=TCONS_00050717|Name=TCONS_00050717|organism=Clytia hemisphaerica|type=transcript|length=3013bp
GACACATTAAGGTAGAGGGCGATCTTGAGAAAAGTAACAAATTTGATGCA
GTATGTAGTTAagcccagccggcacacaacgtcaaaacaacgtctatttg
acattcataacgtccaaataacgttatttgaacgttaaaacaacggacag
aaagcctaaaataaaacTTCTCGCTGAATGAAGAACAACACAAGAACAAT
TTGAAGCGGAATAAGAACAACTGAGCCTCAACAAGAATttactagttctt
ataaaaaagaagaagtatTTTAGGGAGGATTTCAGTCATccacaatttat
tttatttgtgtTGTAGTCTGTTGAAATTATTTCGTCAGTTAGAATAAAAT
AAAGGTTTTTTCTCGATTCTCTTTGAGCATCATTAGAATCTTGCTTAAAA
AGGTATTGTTGTTTTGCTTGCAATTAATTTTATTGAAGATTTCTAaataa
attgcttaaaattatCTAAATTATCTTCACCTTATTTTTTATAGCaattg
tccattttcctaagaaattgggtgttttggagtccccaaagccttaaaat
gttcttaacttgtacttaacattttggccatcgaagactTATGTTCTCAT
GTTCCtaatgttattttttgttcttataataaaaaaacgtgtaattcaaG
TCATCCAAGGGCAGATACCTTCCTCTTTGCGCCAGGTTTAAGTAAGGGTA
AATATTTGTAGTGGAAGACAGTCGGAGACTGATTTGTTTTtcacaagaac
aaactatatgggAAAATTatgcttcgatgaccaaaatattaagaacaagt
tgagaacattttaaaagcTTTGAGGACCCTAAAACACTAAAGTAGCcaca
aatactcacaaaatggtgaaattaagaacatgttaagaatatttttatac
ttaaaattcaaaaagttaagaaaatgcgAAGACTTTAGATATTCtgagtg
ttcttataaaaaacgtgtaaatatTAAGTTTATTTAAAGACATCAAATTG
GTGTCAAATAATTATTAGCTTAAacaattttgtttgaaattaaATAATTC
ATATCATATaactgttaaatttttttttcttcaatttgttaaaaaagcGA
AATTATTCAAAAAGTCAGTAATTATTCTTTTTCGTGGATTTTATTTCTAA
GCCATCTAGACGACTTTATGTCATGTATGGGGCAGAAGATAGTCAGAAGC
AAATGGTCAAAATGCTCAATTTCCGGGTCCAGATTTTCTACGTAGCAATT
ATCACCGTCATTATATGTTTCGGGAATCTGATCGCTGTTGCTCATTACTC
GCATCCCGAATACGCCGGTCCGGCCACGAAATACAATACGTCTTACCAGG
GAATCGAAGCTATCGTCTTTAACCGTCGAGACTGGGTTCATTACGCCGGT
AACCTCTTTTCGATACTCACATCCGTTCCGTTGTTATTCGTCATAACGCC
AAAAGTCGAGATTAACCGGCAACGGAGGTTGATTTTGTTTCCGTATGCCG
TTTGTTCAGCATTGATGGTTGTTGCACCGGAATACATCATCTTCGGGAAC
GTGAAAATGGATTCCAGTTTTGTTGCCATTAACTATGGTCCTCTAATGGA
TGTCACTGAAGCGCGCAGCGAACCAAATCGGAACAACCATGCTTTAAAAT
CGGGGATAATCGGTTTTAACGATACGATCGTGTCGAATCGGGTTAACAAG
GATAGAGAATCGGAAAACATCGGTTATTTTGATTCAAACGGTAGCAACAC
ATCTCTGAAGGACCTGAAattgaacaaaacaaaaagtgaaaaaaccaatg
caaatttgaacaaaaagctCACCGAAAACAAATCCACGCTGAGCGCGATT
CCACGATCAATCGAATCAAATCGCAAACTGAATCGGGAGCGTATCAGCTG
TTTCGTCATATACCAATTATGGATTATTTTACGAGCTGTGTTTTTCGTTA
TCGTCTGCCGGTACTTTTACTTCTTACAATGGCTAGCCACCACCCACCGA
CCACAACCGAAGCGCTCCAATGCTACTAGAAGAGGGATCATCGATATACA
GGTCAATGGCAAAGCTGAATATGAGCATTTCTTGTTGTGAGAAAAATGGA
GACGAGGTGCTAGGCTAGTTAACTAGACTCGTTTCCATCTTTTGAAACCA
AACTTGTACGTGAAAAGGATGATTTTGTTTCCATGGTCACCTACCGGCAA
AAGAGACCTACAGTTGTTCTCTACATGTTGCAATGGGCCATTTAACATGT
GTCAACATGAACAGACATCAACAGTAGAAGACAAATAGACTTTTCGACTC
ACATACACTTAAAGTCAAAATCCCAAAATCGAACAATAATACTAGATTAT
TCTTGTAAGAAACTTGCATAAAACAATTCTTTCCAATACTAAATGGTAGG
CTTCAGTTGGTTGTGATAAGACTATGTTCTGGTTATCGTCTGAAGAATTT
TTCTAACTATTTAGCAGTGAATATTCTACCATATGTCGAAAGCAGTGAGA
AAGGAACTTATATCAATTATGTTGTAACTAAATTTCACAAACTCGCAGTC
CACCGTGCGGCCACTATTAATGGTGCATATATTTTGGGTCATTATTGCAA
TGTTATTATATAGACAGGTATGCAAAAATAGTGGCATTTTCAATCATATA
ACTTTTTATCTTTCCAGGCTATGCTAAGATTCTTAGGAGAATTTCGCTGA
ACTTGATAGCTTACAGGAACAAGTGTAGTCAACAGACTGAGCATCGGACT
AAGGTGGACAGAACATAACTTGAAAgatttcaaatacattttcttttaca
gaaacgaatcattttttatttactaattttcaagaaaaagttaAATTATA
CCCAGTGCATCAAAATATACCCATGCTCGTATGCTTCGTACGAACTATCC
TTATTTTTCCTATTTTGCAGATATCTTTTATAATTACTACTTTATAAACC
AAGGTCTACCTTGCCATTATTCTctctaaggcgagaccaatttgattggt
tgtttTACAGGCC Run BLAST on NCBI transcript from alignment at scaffold_185:67637..72088+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050717 ID=TCONS_00050717|Name=TCONS_00050717|organism=Clytia hemisphaerica|type=transcript|length=4452bp|location=Sequence derived from alignment at scaffold_185:67637..72088+ (Clytia hemisphaerica)
GACACATTAAGGTAGAGGGCGATCTTGAGAAAAGTAACAAATTTGATGCA
GTATGTAGTTAagcccagccggcacacaacgtcaaaacaacgtctatttg
acattcataacgtccaaataacgttatttgaacgttaaaacaacggacag
aaagcctaaaataaaacTTCTCGCTGAATGAAGAACAACACAAGAACAAT
TTGAAGCGGAATAAGAACAACTGAGCCTCAACAAGAATttactagttctt
ataaaaaagaagaagtatTTTAGGGAGGATTTCAGTCATccacaatttat
tttatttgtgtTGTAGTCTGTTGAAATTATTTCGTCAGTTAGAATAAAAT
AAAGGTTTTTTCTCGATTCTCTTTGAGCATCATTAGAATCTTGCTTAAAA
AGGTATTGTTGTTTTGCTTGCAATTAATTTTATTGAAGATTTCTAaataa
attgcttaaaattatCTAAATTATCTTCACCTTATTTTTTATAGCaattg
tccattttcctaagaaattgggtgttttggagtccccaaagccttaaaat
gttcttaacttgtacttaacattttggccatcgaagactTATGTTCTCAT
GTTCCtaatgttattttttgttcttataataaaaaaacgtgtaattcaaG
TCATCCAAGGGCAGATACCTTCCTCTTTGCGCCAGGTTTAAGTAAGGGTA
AATATTTGTAGTGGAAGACAGTCGGAGACTGATTTGTTTTtcacaagaac
aaactatatgggAAAATTatgcttcgatgaccaaaatattaagaacaagt
tgagaacattttaaaagcTTTGAGGACCCTAAAACACTAAAGTAGCcaca
aatactcacaaaatggtgaaattaagaacatgttaagaatatttttatac
ttaaaattcaaaaagttaagaaaatgcgAAGACTTTAGATATTCtgagtg
ttcttataaaaaacgtgtaaatatTAAGTTTATTTAAAGACATCAAATTG
GTGTCAAATAATTATTAGCTTAAacaattttgtttgaaattaaATAATTC
ATATCATATaactgttaaatttttttttcttcaatttgttaaaaaagcGA
AATTATTCAAAAAGTCAGTAATTATTCTTTTTCGTGGATTTTATTTCTAA
GCCATCTAGACGACTTTATGTCATGTATGGGGCAGAAGATAGTAAGTGAA
GTGATTTTAAGTCAGTCAGGGTTGAGGAAGATTTTTTCGTTTCACTTTAT
GAGAACGAAAAAGATATTCTGAAATCCAAATTTGTtgttaaaatttgtaa
atagaGTTGTTAATAACAATTTTTAGCGACTttttgaagaagaaacaaaa
acagtACCCATGTCCCGCTGTAAATCACTGTAGATTAGTTTTCTTTTTCT
GTGTCGCAGAGGAAAAtattaataaaatgaaaaaaaacttttccattaag
aaattacaaaataagTGTGATATTGTTAGAAAATTTATTAGattaatttt
gaatcaaaatcataatttgtttagttttaagttttaagttGACTTACTTC
GCGATGAAATTGATCAAGGTTAATCTGAGTTTAAATTTTGTAGAttaatt
ttgacgaaaaaataCGGGACTGATGCCTCGCCATGTGACTTTTCAACCAA
GTGGTAACTTCATTTAGATTTAAATTTCTTAGATTTTTAATCTAAAGGTT
AGAATCATAAGACTTAGGATTGACGATTTCTACTGATCCACCAAATATGC
TCATACAGTCAGAGGGGAGGGTATGGGTGGGCTTGGTGCTTGAACCAGTT
TTAACTACATATGGTCAAGCCTTATCAGtaacaaagatttttgaaaagat
acATAATCTGAATTGAATGGGCCTCTGGGAGTCCAATCTTTGgacttttc
aaacaaaaaagttttgaagattAGGAAATAGGAAGAAAACCGACAAAGAG
ACTCGAGACTCCTAGATGGGAAaagaaaccacttatttcccatcagGAAC
GCccacgcgtggtttttacacaaacgctggattgaaactaaaatctatcg
ctagatttcaaaaaaagcagttctcaaaaacaaaggaaccgctagatgca
atccgtcgtcatgatcgcagcgcgttctaggcgcgttctggatgggaaat
aagtggtttcatttcccatctaggagtctcgagtctttttcttgcttgag
aaaggttagagattctgcTCTAGTCCTCCTGGCTTAAAACTCATTCTCTC
ATCAAGCcatcaaactaaaaaaaaatcatcaatcaCATATCACACTTTTT
TGAAATCCTAGATCACGCAAGGTCACGGcattaaaattcaaatcacGTCA
TCGCGCAAACCACTGACGTCTCTATAAACgtaaaaagcaataaaaagcAG
ATGTGGCTGTGTAAAACCTAACATGTTTGCTTTCCTTACCTATTCATCCT
AATAAATAAATCGCCCTTCTTTCGAAACCAATTTGTTTCCAATATCGTTT
CAAATCTCAGTTCTgtctttcttcaaaaacaaagaaaactatgatgttgt
tgttgttgttgttcgcAAGTAAGGTCTACAATGGAGTATTATGTTTTCTA
ATATTGTACATGGTTTCTTTTCCTATCCAGGTCAGAAGCAAATGGTCAAA
ATGCTCAATTTCCGGGTCCAGATTTTCTACGTAGCAATTATCACCGTCAT
TATATGTTTCGGGAATCTGATCGCTGTTGCTCATTACTCGCATCCCGAAT
ACGCCGGTCCGGCCACGAAATACAATACGTCTTACCAGGGAATCGAAGCT
ATCGTCTTTAACCGTCGAGACTGGGTTCATTACGCCGGTAACCTCTTTTC
GATACTCACATCCGTTCCGTTGTTATTCGTCATAACGCCAAAAGTCGAGA
TTAACCGGCAACGGAGGTTGATTTTGTTTCCGTATGCCGTTTGTTCAGCA
TTGATGGTTGTTGCACCGGAATACATCATCTTCGGGAACGTGAAAATGGA
TTCCAGTTTTGTTGCCATTAACTATGGTCCTCTAATGGATGTCACTGAAG
CGCGCAGCGAACCAAATCGGAACAACCATGCTTTAAAATCGGGGATAATC
GGTTTTAACGATACGATCGTGTCGAATCGGGTTAACAAGGATAGAGAATC
GGAAAACATCGGTTATTTTGATTCAAACGGTAGCAACACATCTCTGAAGG
ACCTGAAattgaacaaaacaaaaagtgaaaaaaccaatgcaaatttgaac
aaaaagctCACCGAAAACAAATCCACGCTGAGCGCGATTCCACGATCAAT
CGAATCAAATCGCAAACTGAATCGGGAGCGTATCAGCTGTTTCGTCATAT
ACCAATTATGGATTATTTTACGAGCTGTGTTTTTCGTTATCGTCTGCCGG
TACTTTTACTTCTTACAATGGCTAGCCACCACCCACCGACCACAACCGAA
GCGCTCCAATGCTACTAGAAGAGGGATCATCGATATACAGGTCAATGGCA
AAGCTGAATATGAGCATTTCTTGTTGTGAGAAAAATGGAGACGAGGTGCT
AGGCTAGTTAACTAGACTCGTTTCCATCTTTTGAAACCAAACTTGTACGT
GAAAAGGATGATTTTGTTTCCATGGTCACCTACCGGCAAAAGAGACCTAC
AGTTGTTCTCTACATGTTGCAATGGGCCATTTAACATGTGTCAACATGAA
CAGACATCAACAGTAGAAGACAAATAGACTTTTCGACTCACATACACTTA
AAGTCAAAATCCCAAAATCGAACAATAATACTAGATTATTCTTGTAAGAA
ACTTGCATAAAACAATTCTTTCCAATACTAAATGGTAGGCTTCAGTTGGT
TGTGATAAGACTATGTTCTGGTTATCGTCTGAAGAATTTTTCTAACTATT
TAGCAGTGAATATTCTACCATATGTCGAAAGCAGTGAGAAAGGAACTTAT
ATCAATTATGTTGTAACTAAATTTCACAAACTCGCAGTCCACCGTGCGGC
CACTATTAATGGTGCATATATTTTGGGTCATTATTGCAATGTTATTATAT
AGACAGGTATGCAAAAATAGTGGCATTTTCAATCATATAACTTTTTATCT
TTCCAGGCTATGCTAAGATTCTTAGGAGAATTTCGCTGAACTTGATAGCT
TACAGGAACAAGTGTAGTCAACAGACTGAGCATCGGACTAAGGTGGACAG
AACATAACTTGAAAgatttcaaatacattttcttttacagaaacgaatca
ttttttatttactaattttcaagaaaaagttaAATTATACCCAGTGCATC
AAAATATACCCATGCTCGTATGCTTCGTACGAACTATCCTTATTTTTCCT
ATTTTGCAGATATCTTTTATAATTACTACTTTATAAACCAAGGTCTACCT
TGCCATTATTCTctctaaggcgagaccaatttgattggttgtttTACAGG
CC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050717-exon-scaffold_185-1491911889:67637..68827 | TCONS_00050717-exon-scaffold_185-1491911889:67637..68827 | Clytia hemisphaerica | exon |
| TCONS_00050717-exon-scaffold_185-1510915933:67637..68827 | TCONS_00050717-exon-scaffold_185-1510915933:67637..68827 | Clytia hemisphaerica | exon |
| TCONS_00050717-exon-scaffold_185-1575043694:67637..68827 | TCONS_00050717-exon-scaffold_185-1575043694:67637..68827 | Clytia hemisphaerica | exon |
| TCONS_00050717-exon-scaffold_185-1491911889:70267..72088 | TCONS_00050717-exon-scaffold_185-1491911889:70267..72088 | Clytia hemisphaerica | exon |
| TCONS_00050717-exon-scaffold_185-1510915933:70267..72088 | TCONS_00050717-exon-scaffold_185-1510915933:70267..72088 | Clytia hemisphaerica | exon |
| TCONS_00050717-exon-scaffold_185-1575043694:70267..72088 | TCONS_00050717-exon-scaffold_185-1575043694:70267..72088 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:67637..72088 + |
Blast
The following BLAST results are available for this feature:
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