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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050719 ID=TCONS_00050719|Name=TCONS_00050719|organism=Clytia hemisphaerica|type=transcript|length=2004bp
ATTGTTAGAAAATTTATTAGattaattttgaatcaaaatcataatttgtt
tagttttaagttttaagttGACTTACTTCGCGATGAAATTGATCAAGGTT
AATCTGAGTTTAAATTTTGTAGAttaattttgacgaaaaaataCGGGACT
GATGCCTCGCCATGTGACTTTTCAACCAAGTGGTCAGAAGCAAATGGTCA
AAATGCTCAATTTCCGGGTCCAGATTTTCTACGTAGCAATTATCACCGTC
ATTATATGTTTCGGGAATCTGATCGCTGTTGCTCATTACTCGCATCCCGA
ATACGCCGGTCCGGCCACGAAATACAATACGTCTTACCAGGGAATCGAAG
CTATCGTCTTTAACCGTCGAGACTGGGTTCATTACGCCGGTAACCTCTTT
TCGATACTCACATCCGTTCCGTTGTTATTCGTCATAACGCCAAAAGTCGA
GATTAACCGGCAACGGAGGTTGATTTTGTTTCCGTATGCCGTTTGTTCAG
CATTGATGGTTGTTGCACCGGAATACATCATCTTCGGGAACGTGAAAATG
GATTCCAGTTTTGTTGCCATTAACTATGGTCCTCTAATGGATGTCACTGA
AGCGCGCAGCGAACCAAATCGGAACAACCATGCTTTAAAATCGGGGATAA
TCGGTTTTAACGATACGATCGTGTCGAATCGGGTTAACAAGGATAGAGAA
TCGGAAAACATCGGTTATTTTGATTCAAACGGTAGCAACACATCTCTGAA
GGACCTGAAattgaacaaaacaaaaagtgaaaaaaccaatgcaaatttga
acaaaaagctCACCGAAAACAAATCCACGCTGAGCGCGATTCCACGATCA
ATCGAATCAAATCGCAAACTGAATCGGGAGCGTATCAGCTGTTTCGTCAT
ATACCAATTATGGATTATTTTACGAGCTGTGTTTTTCGTTATCGTCTGCC
GGTACTTTTACTTCTTACAATGGCTAGCCACCACCCACCGACCACAACCG
AAGCGCTCCAATGCTACTAGAAGAGGGATCATCGATATACAGGTCAATGG
CAAAGCTGAATATGAGCATTTCTTGTTGTGAGAAAAATGGAGACGAGGTG
CTAGGCTAGTTAACTAGACTCGTTTCCATCTTTTGAAACCAAACTTGTAC
GTGAAAAGGATGATTTTGTTTCCATGGTCACCTACCGGCAAAAGAGACCT
ACAGTTGTTCTCTACATGTTGCAATGGGCCATTTAACATGTGTCAACATG
AACAGACATCAACAGTAGAAGACAAATAGACTTTTCGACTCACATACACT
TAAAGTCAAAATCCCAAAATCGAACAATAATACTAGATTATTCTTGTAAG
AAACTTGCATAAAACAATTCTTTCCAATACTAAATGGTAGGCTTCAGTTG
GTTGTGATAAGACTATGTTCTGGTTATCGTCTGAAGAATTTTTCTAACTA
TTTAGCAGTGAATATTCTACCATATGTCGAAAGCAGTGAGAAAGGAACTT
ATATCAATTATGTTGTAACTAAATTTCACAAACTCGCAGTCCACCGTGCG
GCCACTATTAATGGTGCATATATTTTGGGTCATTATTGCAATGTTATTAT
ATAGACAGGTATGCAAAAATAGTGGCATTTTCAATCATATAACTTTTTAT
CTTTCCAGGCTATGCTAAGATTCTTAGGAGAATTTCGCTGAACTTGATAG
CTTACAGGAACAAGTGTAGTCAACAGACTGAGCATCGGACTAAGGTGGAC
AGAACATAACTTGAAAgatttcaaatacattttcttttacagaaacgaat
cattttttatttactaattttcaagaaaaagttaAATTATACCCAGTGCA
TCAAAATATACCCATGCTCGTATGCTTCGTACGAACTATCCTTATTTTTC
CTATTTTGCAGATATCTTTTATAATTACTACTTTATAAACCAAGGTCTAC
CTTGCCATTATTCTctctaaggcgagaccaatttgattggttgtttTACA
GGCC Run BLAST on NCBI transcript from alignment at scaffold_185:69108..72088+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050719 ID=TCONS_00050719|Name=TCONS_00050719|organism=Clytia hemisphaerica|type=transcript|length=2981bp|location=Sequence derived from alignment at scaffold_185:69108..72088+ (Clytia hemisphaerica)
ATTGTTAGAAAATTTATTAGattaattttgaatcaaaatcataatttgtt
tagttttaagttttaagttGACTTACTTCGCGATGAAATTGATCAAGGTT
AATCTGAGTTTAAATTTTGTAGAttaattttgacgaaaaaataCGGGACT
GATGCCTCGCCATGTGACTTTTCAACCAAGTGGTAACTTCATTTAGATTT
AAATTTCTTAGATTTTTAATCTAAAGGTTAGAATCATAAGACTTAGGATT
GACGATTTCTACTGATCCACCAAATATGCTCATACAGTCAGAGGGGAGGG
TATGGGTGGGCTTGGTGCTTGAACCAGTTTTAACTACATATGGTCAAGCC
TTATCAGtaacaaagatttttgaaaagatacATAATCTGAATTGAATGGG
CCTCTGGGAGTCCAATCTTTGgacttttcaaacaaaaaagttttgaagat
tAGGAAATAGGAAGAAAACCGACAAAGAGACTCGAGACTCCTAGATGGGA
AaagaaaccacttatttcccatcagGAACGCccacgcgtggtttttacac
aaacgctggattgaaactaaaatctatcgctagatttcaaaaaaagcagt
tctcaaaaacaaaggaaccgctagatgcaatccgtcgtcatgatcgcagc
gcgttctaggcgcgttctggatgggaaataagtggtttcatttcccatct
aggagtctcgagtctttttcttgcttgagaaaggttagagattctgcTCT
AGTCCTCCTGGCTTAAAACTCATTCTCTCATCAAGCcatcaaactaaaaa
aaaatcatcaatcaCATATCACACTTTTTTGAAATCCTAGATCACGCAAG
GTCACGGcattaaaattcaaatcacGTCATCGCGCAAACCACTGACGTCT
CTATAAACgtaaaaagcaataaaaagcAGATGTGGCTGTGTAAAACCTAA
CATGTTTGCTTTCCTTACCTATTCATCCTAATAAATAAATCGCCCTTCTT
TCGAAACCAATTTGTTTCCAATATCGTTTCAAATCTCAGTTCTgtctttc
ttcaaaaacaaagaaaactatgatgttgttgttgttgttgttcgcAAGTA
AGGTCTACAATGGAGTATTATGTTTTCTAATATTGTACATGGTTTCTTTT
CCTATCCAGGTCAGAAGCAAATGGTCAAAATGCTCAATTTCCGGGTCCAG
ATTTTCTACGTAGCAATTATCACCGTCATTATATGTTTCGGGAATCTGAT
CGCTGTTGCTCATTACTCGCATCCCGAATACGCCGGTCCGGCCACGAAAT
ACAATACGTCTTACCAGGGAATCGAAGCTATCGTCTTTAACCGTCGAGAC
TGGGTTCATTACGCCGGTAACCTCTTTTCGATACTCACATCCGTTCCGTT
GTTATTCGTCATAACGCCAAAAGTCGAGATTAACCGGCAACGGAGGTTGA
TTTTGTTTCCGTATGCCGTTTGTTCAGCATTGATGGTTGTTGCACCGGAA
TACATCATCTTCGGGAACGTGAAAATGGATTCCAGTTTTGTTGCCATTAA
CTATGGTCCTCTAATGGATGTCACTGAAGCGCGCAGCGAACCAAATCGGA
ACAACCATGCTTTAAAATCGGGGATAATCGGTTTTAACGATACGATCGTG
TCGAATCGGGTTAACAAGGATAGAGAATCGGAAAACATCGGTTATTTTGA
TTCAAACGGTAGCAACACATCTCTGAAGGACCTGAAattgaacaaaacaa
aaagtgaaaaaaccaatgcaaatttgaacaaaaagctCACCGAAAACAAA
TCCACGCTGAGCGCGATTCCACGATCAATCGAATCAAATCGCAAACTGAA
TCGGGAGCGTATCAGCTGTTTCGTCATATACCAATTATGGATTATTTTAC
GAGCTGTGTTTTTCGTTATCGTCTGCCGGTACTTTTACTTCTTACAATGG
CTAGCCACCACCCACCGACCACAACCGAAGCGCTCCAATGCTACTAGAAG
AGGGATCATCGATATACAGGTCAATGGCAAAGCTGAATATGAGCATTTCT
TGTTGTGAGAAAAATGGAGACGAGGTGCTAGGCTAGTTAACTAGACTCGT
TTCCATCTTTTGAAACCAAACTTGTACGTGAAAAGGATGATTTTGTTTCC
ATGGTCACCTACCGGCAAAAGAGACCTACAGTTGTTCTCTACATGTTGCA
ATGGGCCATTTAACATGTGTCAACATGAACAGACATCAACAGTAGAAGAC
AAATAGACTTTTCGACTCACATACACTTAAAGTCAAAATCCCAAAATCGA
ACAATAATACTAGATTATTCTTGTAAGAAACTTGCATAAAACAATTCTTT
CCAATACTAAATGGTAGGCTTCAGTTGGTTGTGATAAGACTATGTTCTGG
TTATCGTCTGAAGAATTTTTCTAACTATTTAGCAGTGAATATTCTACCAT
ATGTCGAAAGCAGTGAGAAAGGAACTTATATCAATTATGTTGTAACTAAA
TTTCACAAACTCGCAGTCCACCGTGCGGCCACTATTAATGGTGCATATAT
TTTGGGTCATTATTGCAATGTTATTATATAGACAGGTATGCAAAAATAGT
GGCATTTTCAATCATATAACTTTTTATCTTTCCAGGCTATGCTAAGATTC
TTAGGAGAATTTCGCTGAACTTGATAGCTTACAGGAACAAGTGTAGTCAA
CAGACTGAGCATCGGACTAAGGTGGACAGAACATAACTTGAAAgatttca
aatacattttcttttacagaaacgaatcattttttatttactaattttca
agaaaaagttaAATTATACCCAGTGCATCAAAATATACCCATGCTCGTAT
GCTTCGTACGAACTATCCTTATTTTTCCTATTTTGCAGATATCTTTTATA
ATTACTACTTTATAAACCAAGGTCTACCTTGCCATTATTCTctctaaggc
gagaccaatttgattggttgtttTACAGGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050719-exon-scaffold_185-1491911889:69108..69289 | TCONS_00050719-exon-scaffold_185-1491911889:69108..69289 | Clytia hemisphaerica | exon |
| TCONS_00050719-exon-scaffold_185-1510915933:69108..69289 | TCONS_00050719-exon-scaffold_185-1510915933:69108..69289 | Clytia hemisphaerica | exon |
| TCONS_00050719-exon-scaffold_185-1575043694:69108..69289 | TCONS_00050719-exon-scaffold_185-1575043694:69108..69289 | Clytia hemisphaerica | exon |
| TCONS_00050719-exon-scaffold_185-1491911889:70267..72088 | TCONS_00050719-exon-scaffold_185-1491911889:70267..72088 | Clytia hemisphaerica | exon |
| TCONS_00050719-exon-scaffold_185-1510915933:70267..72088 | TCONS_00050719-exon-scaffold_185-1510915933:70267..72088 | Clytia hemisphaerica | exon |
| TCONS_00050719-exon-scaffold_185-1575043694:70267..72088 | TCONS_00050719-exon-scaffold_185-1575043694:70267..72088 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:69108..72088 + |
Blast
The following BLAST results are available for this feature:
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