TCONS_00050720 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050720
Unique NameTCONS_00050720
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050720 ID=TCONS_00050720|Name=TCONS_00050720|organism=Clytia hemisphaerica|type=transcript|length=395bp
CGACAGTTGAGGATGATGACGAACCAAACGTTGATTTGGAGGAGATTCAA
CGACAAATCATCGCGTGGCTGACGGTCAACCACGTAAGACGGGTCGATTT
TGCCAAATATATAGGACGCTCCAAAGGAACGTTGTCAGATTTGCTGAACA
AAACACCAACGGCAACGAAAGACGGAAAACAAATCTGGTTGAAGATTAAA
GGTTTTTTGGACAGTGAAGAGGAGCAGCATGATCTGAAGGAGGTAGCTGT
CAATTCAACACAATCAGTAAAGAGAAAACGTTCTGGACAAGGTCCTGCAA
AATTTTCGGAGGTGGAAAAGGCGATGCTGGACGAGCAATTCATGAAGGAG
GATGGCAAACCTCCATTAATAAAAAAAGGCTATGGCTAAAATGGC
Run BLAST on NCBI

protein sequence of TCONS_00050720-protein

>TCONS_00050720-protein ID=TCONS_00050720-protein|Name=TCONS_00050720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
TVEDDDEPNVDLEEIQRQIIAWLTVNHVRRVDFAKYIGRSKGTLSDLLNK
TPTATKDGKQIWLKIKGFLDSEEEQHDLKEVAVNSTQSVKRKRSGQGPAK
FSEVEKAMLDEQFMKEDGKPPLIKKGYG
Run BLAST on NCBI

transcript from alignment at scaffold_185:105239..106017+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050720 ID=TCONS_00050720|Name=TCONS_00050720|organism=Clytia hemisphaerica|type=transcript|length=779bp|location=Sequence derived from alignment at scaffold_185:105239..106017+ (Clytia hemisphaerica)
CGACAGTTGAGGATGATGACGAACCAAACGTTGATTTGGAGGAGATTCAA
CGACAAATCATCGCGTGGCTGACGGTCAACCACGTAAGACGGGTCGATTT
TGCCAAATATATAGGACGCTCCAAAGGAACGTTGTCAGATTTGCTGAACA
AAACACCAACGGCAACGAAAGACGGAAAACAAATCTGGTTGAAGATTAAA
GGTTTTTTGGACAGTGAAGAGGAGCAGCATGATCTGAAGGAGGTAGCTGT
CAATTCAAGtaagaaaattgaatttaaacttaatttgtttttataattgT
TAATGAACTCTATAACAGAAAAATAACTCACCAAAAAATTCACCAAAAAC
AGATTTTACTTAGTACGCGCAATGGAATCTCATAGTCGAAAgtacaaata
gaaaaaaatcatttggaTATAACTATAAGGAGATGCttgtttttttaaat
gtgcttattgaagacacccctgtctcacagccccggggAACTTTTTCTAT
GTGAAGTGGGcatggttttggagtgtaaatttttaagaattgaatttcga
gtgggggtGAAATAAAAGtcgatttcccagtggggctgaaactcCATTTT
GATTTTGCAAGAAGCTTCTCATGTcttgttttctccttttagCACAATCA
GTAAAGAGAAAACGTTCTGGACAAGGTCCTGCAAAATTTTCGGAGGTGGA
AAAGGCGATGCTGGACGAGCAATTCATGAAGGAGGATGGCAAACCTCCAT
TAATAAAAAAAGGCTATGGCTAAAATGGC

Coding sequence (CDS) from alignment at scaffold_185:105239..106017+

>TCONS_00050720 ID=TCONS_00050720|Name=TCONS_00050720|organism=Clytia hemisphaerica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_185:105239..106017+ (Clytia hemisphaerica)
ACAGTTGAGGATGATGACGAACCAAACGTTGATTTGGAGGAGATTCAACG
ACAAATCATCGCGTGGCTGACGGTCAACCACGTAAGACGGGTCGATTTTG
CCAAATATATAGGACGCTCCAAAGGAACGTTGTCAGATTTGCTGAACAAA
ACACCAACGGCAACGAAAGACGGAAAACAAATCTGGTTGAAGATTAAAGG
TTTTTTGGACAGTGAAGAGGAGCAGCATGATCTGAAGGAGGTAGCTGTCA
ATTCAACACAATCAGTAAAGAGAAAACGTTCTGGACAAGGTCCTGCAAAA
TTTTCGGAGGTGGAAAAGGCGATGCTGGACGAGCAATTCATGAAGGAGGA
TGGCAAACCTCCATTAATAAAAAAAGGCTATGGCTAAACAGTTGAGGATG
ATGACGAACCAAACGTTGATTTGGAGGAGATTCAACGACAAATCATCGCG
TGGCTGACGGTCAACCACGTAAGACGGGTCGATTTTGCCAAATATATAGG
ACGCTCCAAAGGAACGTTGTCAGATTTGCTGAACAAAACACCAACGGCAA
CGAAAGACGGAAAACAAATCTGGTTGAAGATTAAAGGTTTTTTGGACAGT
GAAGAGGAGCAGCATGATCTGAAGGAGGTAGCTGTCAATTCAACACAATC
AGTAAAGAGAAAACGTTCTGGACAAGGTCCTGCAAAATTTTCGGAGGTGG
AAAAGGCGATGCTGGACGAGCAATTCATGAAGGAGGATGGCAAACCTCCA
TTAATAAAAAAAGGCTATGGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032137XLOC_032137Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050720-proteinTCONS_00050720-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050720-exon-scaffold_185-1491911889:105239..105496TCONS_00050720-exon-scaffold_185-1491911889:105239..105496Clytia hemisphaericaexon
TCONS_00050720-exon-scaffold_185-1510915933:105239..105496TCONS_00050720-exon-scaffold_185-1510915933:105239..105496Clytia hemisphaericaexon
TCONS_00050720-exon-scaffold_185-1575043694:105239..105496TCONS_00050720-exon-scaffold_185-1575043694:105239..105496Clytia hemisphaericaexon
TCONS_00050720-exon-scaffold_185-1491911889:105881..106017TCONS_00050720-exon-scaffold_185-1491911889:105881..106017Clytia hemisphaericaexon
TCONS_00050720-exon-scaffold_185-1510915933:105881..106017TCONS_00050720-exon-scaffold_185-1510915933:105881..106017Clytia hemisphaericaexon
TCONS_00050720-exon-scaffold_185-1575043694:105881..106017TCONS_00050720-exon-scaffold_185-1575043694:105881..106017Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_185supercontigscaffold_185:105239..106017 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.257224	0.406524	0.980908	0.688736	0.160733	0.199094	0.386491	0.254064	0.380567	0.263481	0	0.232464	0.286376	0.293527	0	0	0	0.269859	0.218699	0.198829	0.409579	2.01047	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003350CUT_dom
IPR010982Lambda_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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