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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050722 ID=TCONS_00050722|Name=TCONS_00050722|organism=Clytia hemisphaerica|type=transcript|length=750bp
CAATTCGCGAAGGAAAGAGAAGATCGGGGAGTACAAACGTGGCCAGTACG
TCAACGAGGTGccaaaagaaaaacgaaaaactgTTATTGTTAGTAGTGAC
GAGGAAGAAGATTGATATACATTATTTACAAACATTTTCTATTTCGTTTT
CCAAGCTTCTTTTTATCCCCAAGCCAATCGAGTCAAAATTATTAGGAGTT
AAATTTGATTATCTTGGTATATCAGCATTCCttagcttttttatttattg
aaagtttttaCCTACAGTATTCGCAATTTGTCTAAATTTAATTATCCTTG
ACACCGATAGTTGACCGAAAACACCGAAATAGAGATTTAAAAATCTGATG
TTCTTGAAGTACCAATTACCGCAACCTATTATTTTCCCTTAATACCGATC
TAAAGCGAGGGCAATATCGATAACCTATTAGCCCATCCGTTAATTCCACC
TTTTTGATTAGCTCATTAATATAAAAAAAggctttcaaatattttcatat
atcGTCTTTTTTGTCTGGAACAGCTGTACTGTACATCAAATTTAAGATCT
GGAACCGATTAGAGAAATGTTCCTTGATAATAACGAAAGTTCATCGGtaa
ctttgaatattttcttcACGAATGCATCGTCGTGTCGTCTTCTGTCTTAG
TCCAAAGGAATGCGATAGATAGTCCAACGTTAAGTACttGTTTTATTTCC
CAAGATGTGGTTCAATCATTTGCGTTCTGAGAGAGATTTTCCAATCCgac Run BLAST on NCBI transcript from alignment at scaffold_185:107169..108195+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050722 ID=TCONS_00050722|Name=TCONS_00050722|organism=Clytia hemisphaerica|type=transcript|length=1027bp|location=Sequence derived from alignment at scaffold_185:107169..108195+ (Clytia hemisphaerica)
CAATTCGCGAAGGAAAGAGAAGATCGGGGAGTACAAACGTGGCCAGTACG
TCAACGAGGTGccaaaagaaaaacgaaaaactgTTATTGTTAGTAGTGAC
GAGGAAGAAGATTGATATACATTATTTACAAACATTTTCTATTTCGTTTT
CCAAGCTTCTTTTTATCCCCAAGCCAATCGAGTCAAAATTATTAGGAGTT
AAATTTGATTATCTTGGTATATCAGCATTCCttagcttttttatttattg
aaagtttttaCCTACAGTATTCGCAATTTGTCTAAATTTAATTATCCTTG
ACACCGATAGTTGACCGAAAACACCGAAATAGAGATTTAAAAATCTGATG
TTCTTGAAGTACCAATTACCGCAACCTATTATTTTCCCTTAATACCGATC
TAAAGCGAGGGCAATATCGATAACCTATTAGCCCATCCGTTAATTCCACC
TTTTTGATTAGCTCATTAATATAAAAAAAggctttcaaatattttcatat
atcGTCTTTTTTGTCTGGAACAGCTGTACTGTACATCAAATTTAAGATCT
GGAACCGATTAGAGAAATGTTCCTTGATAATAACGAAAGTTCATCGGtaa
ctttgaatattttcttcACGAATGCATCGTCGTGTCGTCTTCTGTCTTAG
TCCAAAGGAATGCGATAGATAGTCCAACGTTAAGTACATAAAATAGAAAC
AAACGGTATACAGCTAATAGTGTTTAGCAAGCGTATATTAGGTATTAGGT
GTGACTAGTATAAACTTtactaggaatttgagaaaaaaagggggAGGATG
AAGTCTCCCAAAGAGAATAtgtataaaaacaaatatttaaaCATATGTTT
TTATATTCTCTTTCAGTCTCCCTAGTCTATctgcttccgccgggcctgct
CCATAAATTTCCTTTAAAGGGGACGGCGTGGGGACGGCGCAtgttatata
aaaatttttcttacttGTTTTATTTCCCAAGATGTGGTTCAATCATTTGC
GTTCTGAGAGAGATTTTCCAATCCgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050722-exon-scaffold_185-1491911889:107169..107855 | TCONS_00050722-exon-scaffold_185-1491911889:107169..107855 | Clytia hemisphaerica | exon |
| TCONS_00050722-exon-scaffold_185-1510915933:107169..107855 | TCONS_00050722-exon-scaffold_185-1510915933:107169..107855 | Clytia hemisphaerica | exon |
| TCONS_00050722-exon-scaffold_185-1575043694:107169..107855 | TCONS_00050722-exon-scaffold_185-1575043694:107169..107855 | Clytia hemisphaerica | exon |
| TCONS_00050722-exon-scaffold_185-1491911889:108133..108195 | TCONS_00050722-exon-scaffold_185-1491911889:108133..108195 | Clytia hemisphaerica | exon |
| TCONS_00050722-exon-scaffold_185-1510915933:108133..108195 | TCONS_00050722-exon-scaffold_185-1510915933:108133..108195 | Clytia hemisphaerica | exon |
| TCONS_00050722-exon-scaffold_185-1575043694:108133..108195 | TCONS_00050722-exon-scaffold_185-1575043694:108133..108195 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:107169..108195 + |
Blast
The following BLAST results are available for this feature:
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