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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050739 ID=TCONS_00050739|Name=TCONS_00050739|organism=Clytia hemisphaerica|type=transcript|length=1771bp
ttgaagccttcggatgttcttaaccttttcagttttaagcctaaaaatgt
tcttaacatgtacttatttattttgaccattttgtgggtatttttgatca
ttttcctGAAATGTGGTGTTTTTGactccacaaagccttaaaatgttctt
aacttgttcttaacattttggctatcgaagccttatgttctttgaTAGTT
CgctcttacaaaaaaaagtgtaatttcaTTGATGCAATCACTAGTTacat
atttcgaaaaaatcttcttaGATTGTAATAAAGTCTTTGAAAATACTTTC
TCAGCTTATTCTGAAAGTTATGAAATACACAATATAGAAATGTTTCTGTT
ACCGTCTattagaccttatcggagtttttgatttttctaaaaaagcgatg
cattgtaggattgtttcgagtatattacaatagaattgcCTCCAGGAATT
CCTAAAGAGagttctattgtaatacactcgaaacaatcccacaatgcatc
gcttttttagaaaagtcaaaaactccgataaggtctattatatTGAGACA
CttaatcaaaaaatttagttGAGTCGAATTAAAGAGATATTCGATCCCCT
GGAAAAGAACAGAAATCAGTTGGACTAATGCTAcactatttttataagaa
ccagtaaattttttctgaggctcggctgttcttatcttgttcttcTTATA
aggtgtaattgaggtattttaggctttatacaaaattttaatACTTTAAC
CCCTAAATCGCTTAAAATTTAGCaattcaggctcagcattgttcttaaat
tgttctcatttttcagcgattttgagccttattgttcttataaaattgtt
ctcgtATAAGAAAAGTATACTTTATTGTATCATTTACTTACAACCCAGCA
CAACTTTTAATCATGTTTACAACGTCTCGCTTAAAAGTTTCATCGCTGAT
ACCTGAGTACCCAGGAAAATGATTCAAATCTACCAAAGCGTAATTCCCTT
CTAAATCCTTCAAAATATCGAAACCATACATACGAAATCGTGTTACTTTG
GAAAGTCGTTCCACGATAGCCTGGATAACAGTCTTATTTAACATGTTCGG
GTTTTCTTCGCCCGataaccacgcgcgggcgttcggATCAGTACCATGAA
GTTCTGGAATAAACGCGCGTCCTGTTTTTGAAACGTTTCGTGTATCGAAA
ACTAGGCTGGGCTGGTTAGGATCACAGTCTATATTCTGTATGGAGGGTCT
TTCGCACATACTAACACGATCCCCAATCACAAACACTTTGTATATAACGC
CACCATGGTTACAAAACTCCTGCAAAAGACACGGCACCGGTAGATCAAAT
AATTTCTCATCACTAAAAATGATCTTCATATCATGTGCACCATCTAGACA
AGAAGCCAAAGGTTTGGCCAAGATAGGAAACTTGATTCCAGATCTCTCGA
TAAGTTCGCGACAAACATCTAAGGCTGTGTTTCCAGGTATCTCAACAGTT
GTTGGTACGTAAACAGAAACACCATCGACAGTCATTGAGCATTGATTCAG
TATCTCGACTTGATATTGTCTTTTCATTAACTTAATAACAACTTCAAAAT
CATCCACAACCACCATTTCAGGATGTCGTTTCGAATATTCAACAGTCTTT
TGTATTAGATTTTCTGTTTCTTCCAAACTTAAACCGTCTTTATGTATATC
CACAACTTTATGGAAAAACACATCAAAAGGTCCTTGGCTTTCTAAATCGC
CGTGTATATCCACTTCAGTNN Run BLAST on NCBI transcript from alignment at scaffold_185:226228..227998+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050739 ID=TCONS_00050739|Name=TCONS_00050739|organism=Clytia hemisphaerica|type=transcript|length=1771bp|location=Sequence derived from alignment at scaffold_185:226228..227998+ (Clytia hemisphaerica)
ttgaagccttcggatgttcttaaccttttcagttttaagcctaaaaatgt
tcttaacatgtacttatttattttgaccattttgtgggtatttttgatca
ttttcctGAAATGTGGTGTTTTTGactccacaaagccttaaaatgttctt
aacttgttcttaacattttggctatcgaagccttatgttctttgaTAGTT
CgctcttacaaaaaaaagtgtaatttcaTTGATGCAATCACTAGTTacat
atttcgaaaaaatcttcttaGATTGTAATAAAGTCTTTGAAAATACTTTC
TCAGCTTATTCTGAAAGTTATGAAATACACAATATAGAAATGTTTCTGTT
ACCGTCTattagaccttatcggagtttttgatttttctaaaaaagcgatg
cattgtaggattgtttcgagtatattacaatagaattgcCTCCAGGAATT
CCTAAAGAGagttctattgtaatacactcgaaacaatcccacaatgcatc
gcttttttagaaaagtcaaaaactccgataaggtctattatatTGAGACA
CttaatcaaaaaatttagttGAGTCGAATTAAAGAGATATTCGATCCCCT
GGAAAAGAACAGAAATCAGTTGGACTAATGCTAcactatttttataagaa
ccagtaaattttttctgaggctcggctgttcttatcttgttcttcTTATA
aggtgtaattgaggtattttaggctttatacaaaattttaatACTTTAAC
CCCTAAATCGCTTAAAATTTAGCaattcaggctcagcattgttcttaaat
tgttctcatttttcagcgattttgagccttattgttcttataaaattgtt
ctcgtATAAGAAAAGTATACTTTATTGTATCATTTACTTACAACCCAGCA
CAACTTTTAATCATGTTTACAACGTCTCGCTTAAAAGTTTCATCGCTGAT
ACCTGAGTACCCAGGAAAATGATTCAAATCTACCAAAGCGTAATTCCCTT
CTAAATCCTTCAAAATATCGAAACCATACATACGAAATCGTGTTACTTTG
GAAAGTCGTTCCACGATAGCCTGGATAACAGTCTTATTTAACATGTTCGG
GTTTTCTTCGCCCGataaccacgcgcgggcgttcggATCAGTACCATGAA
GTTCTGGAATAAACGCGCGTCCTGTTTTTGAAACGTTTCGTGTATCGAAA
ACTAGGCTGGGCTGGTTAGGATCACAGTCTATATTCTGTATGGAGGGTCT
TTCGCACATACTAACACGATCCCCAATCACAAACACTTTGTATATAACGC
CACCATGGTTACAAAACTCCTGCAAAAGACACGGCACCGGTAGATCAAAT
AATTTCTCATCACTAAAAATGATCTTCATATCATGTGCACCATCTAGACA
AGAAGCCAAAGGTTTGGCCAAGATAGGAAACTTGATTCCAGATCTCTCGA
TAAGTTCGCGACAAACATCTAAGGCTGTGTTTCCAGGTATCTCAACAGTT
GTTGGTACGTAAACAGAAACACCATCGACAGTCATTGAGCATTGATTCAG
TATCTCGACTTGATATTGTCTTTTCATTAACTTAATAACAACTTCAAAAT
CATCCACAACCACCATTTCAGGATGTCGTTTCGAATATTCAACAGTCTTT
TGTATTAGATTTTCTGTTTCTTCCAAACTTAAACCGTCTTTATGTATATC
CACAACTTTATGGAAAAACACATCAAAAGGTCCTTGGCTTTCTAAATCGC
CGTGTATATCCACTTCAGTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050739-exon-scaffold_185-1491911889:226228..227998 | TCONS_00050739-exon-scaffold_185-1491911889:226228..227998 | Clytia hemisphaerica | exon |
| TCONS_00050739-exon-scaffold_185-1510915933:226228..227998 | TCONS_00050739-exon-scaffold_185-1510915933:226228..227998 | Clytia hemisphaerica | exon |
| TCONS_00050739-exon-scaffold_185-1575043694:226228..227998 | TCONS_00050739-exon-scaffold_185-1575043694:226228..227998 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:226228..227998 + |
Blast
BLAST of TCONS_00050739 vs. Swiss-Prot (Human)
Match: ITPK1 (Inositol-tetrakisphosphate 1-kinase OS=Homo sapiens GN=ITPK1 PE=1 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 5.144e-35 Identity = 87/295 (29.49%), Postives = 151/295 (51.19%), Query Frame = -3
Query: 903 EVDIHGDLESQGPFDVFFHKVVDI-----HKDGLSLEETENLIQKTVEYSKRHPEMVVVDDFEVVIKLMKRQYQVEILNQCSMTVDGVSVYVPTTVEIPGNTALDVCRELIERSGIKFPILAKPLASCLDGAHDMKIIFSDEKLFDLPVPCLLQEFCNHGGVIYKVFVIGDRVSMCERPSIQNIDCD-PNQPSLVFDTRNVSKTGRAFIPELHGTDPNARAWLSGEENPNMLNKTVIQAIVERLSKVTRFRMYGFD-ILKDLEGNYALVDLNHFPGYSGISDETFKRDVVNMIKS 1766
++++ +E QGP DV HK+ D+ D SLE L+ + EY HPE +V+D + L+ R E++ + ++ + P +E+ D R L+E++G+ FP + K + +H+M I+F+ E L + PC++Q F NH V+YKVFV+G+ ++ +RPS++N ++ S+ F++ NVSK PE E P + VI+ + L + ++G D I+ + G +A++D+N FPGY G+S+ F D++N I +
Sbjct: 40 QLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLE----LVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMR-LLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSK------PESSSVLTELDKIEGVFERP---SDEVIRELSRALRQALGVSLFGIDIIINNQTGQHAVIDINAFPGYEGVSE--FFTDLLNHIAT 318
The following BLAST results are available for this feature:
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