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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050741 ID=TCONS_00050741|Name=TCONS_00050741|organism=Clytia hemisphaerica|type=transcript|length=3112bp
CATATGTACACTTCATAAAGTAGAACTTGTCAAAACATGACATGATGGGT
CATGAAATATTAATCAGCggaagtcagcaaaaaaaaaccTGCTACTTGaa
tcaatattttgacaaataataTAAAACAAAACGCGCTTCATAGCAgtgat
ttattttcaaaatttcaaagattatatcctttagaaaaagaaatctaaaa
taaaaatgcAGAATGTCTTTGACCTGGAAAGGCCAAAACATAGCTTTCTA
TATAGTGGATATTTTGCAAACAAAGTTAAAAAGTATAAGAAGAGAGGTAG
GTGGAAACCCTTTTAAAAACagtgggctcttccagaaaaaatccgttccc
GAGGATGGAGGATTATATTATTCCAATAATTTGTCCATTAACGTATTCCA
TTTTTTAcacctacaatcatggtcgaaatatattgacattttagtgcatt
ttaaagtttttcataatttaaagttcgggcgagaattgctattttagcac
ttccactttctttcattgattatttcgattttagaggggttcggtggctt
ctaggctatattccaagccttattcgagcaaatttgagcttttaaatcct
gagatcctaaggtcctaaactcagagttaaaactctactttccaactgta
gtttaaggcgcttaaaaatcatttgtggtgtttaaaatttcgccgggaaa
tcccctttgtctcaaatattttgtccatgattgtagccACGTGTATGTTT
TGTCACTTGAGAAAGCATCATGGAACCCCTGGAAACTAAAATTTAAACAT
TGTTCNCTTTTGTCACTTGAGAAAGCATCATGGAACCCCTGGAAACTAAA
ATTTAACCCCGAACATTGTTCTAGAGGTTGTGGAAGAAAGCTAATGCTTC
CCCTTTTTGGCACATTGCTTTACCATCCTGAcaatatcttttgaaaattg
ctgTTCTCTGACACCTGTATATCCAGGAAAATGATTCAAGTCTACAACAG
CATAATCTCCTTGAAGGTCTTTCAATATATCAACTCCATATAATTTCAAA
TCCGCATAATCAGATATCTTATTATGAATAGCCCGAAGCACAACATTATC
AAGCAAAAGAGGGTCTTCCTCATAAGAATGCCATGTTCGTGTCCTAGGAT
CTCGTTCGTGTAGTTCTGGGTTAAAATTATTCcctatttttgatatttgt
cttgtatcaaaagttaaacTGTTTTGTTTGTTAACACACTCTATATTCTT
TACAGAAGGTCTTTCAAAGACACTTATCTGATCTCCAATGACAAACATCT
TATACAAAACACCACTATGGTTACAAAACTCTTGCAATAAGCAAGGGTAT
GTAATATCACGTAACTGTTCCatggaaaaaataataataaacttGTGTGC
ATCTACCGCTTTGCAGGCTGGTAACGGCTTCACCAAAATAGGAAATTTCA
TATCACAAGATAAAATCTGTTTCTGCATATGTTCGATAGTAGAAAGATTG
TTGTCCAAATCACATAATTCTAAAGATTTAGGTGCATACACTGAAATACC
ATTGACGTTTAAAGCACATTCCTTCAAAATCTCTAATTGATATGTACGGT
TCATTAGCCTTTGGACAAGCTTGAAGTCATCAATAACGTACGTATTAGGA
AAGCGTTGAGCATAATTCGACAATACTCCAATCATCTGTtcgactttttc
aaaacttgaattTTTCTTGTAAAGATCTGAAACTTTGTGTAAGATAACAT
CAAATGGCCCTTGATCTTCCATGTTATTGTCAAGNCTTTTGTCACTTGAG
AAAGCATCATGGAACCCCTGGAAACTAAAATTTAACCCCGAACATTGTTC
TAGAGGTTGTGGAAGAAAGCTAATGCTTCCCCTTTTTGGCACATTGCTTT
ACCATCCTGAcaatatcttttgaaaattgctgTTCTCTGACACCTGTATA
TCCAGGAAAATGATTCAAGTCTACAACAGCATAATCTCCTTGAAGGTCTT
TCAATATATCAACTCCATATAATTTCAAATCCGCATAATCAGATATCTTA
TTATGAATAGCCCGAAGCACAACATTATCAAGCAAAAGAGGGTCTTCCTC
ATAAGAATGCCATGTTCGTGTCCTAGGATCTCGTTCGTGTAGTTCTGGGT
TAAAATTATTCcctatttttgatatttgtcttgtatcaaaagttaaacTG
TTTTGTTTGTTAACACACTCTATATTCTTTACAGAAGGTCTTTCAAAGAC
ACTTATCTGATCTCCAATGACAAACATCTTATACAAAACACCACTATGGT
TACAAAACTCTTGCAATAAGCAAGGGTATGTAATATCACGTAACTGTTCC
atggaaaaaataataataaacttGTGTGCATCTACCGCTTTGCAGGCTGG
TAACGGCTTCACCAAAATAGGAAATTTCATATCACAAGATAAAATCTGTT
TCTGCATATGTTCGATAGTAGAAAGATTGTTGTCCAAATCACATAATTCT
AAAGATTTAGGTGCATACACTGAAATACCATTGACGTTTAAAGCACATTC
CTTCAAAATCTCTAATTGATATTTACGGTTCATTAGCCTTTGGACAAGCT
TGAAGTCATCAATAACGTACGTATTAGGAAAGCGTTGAGCATAATTCGAC
AATACTCCGATCATctgttcaactttttcaaaacttgaattTTTCTTGTA
AAGATCTGAAACTTTGTGTAAGATAACATCAAATGGCCCTTGATCTTCCA
TGTTATTGtcaagattaatttttgtaattttgattgATTCTTGATCACAT
AGATCTTGGATACACTCTGGTataattttcttccttttacaAGGCATTAG
AACACCCAAATGTATTGGTTTAACTTCAAAGTCCATGTTTTACAAAGTTG
TTCTCTGAAAATGATAAAGTTTAAACACCAAAATGACTGTAAGAAGACTG
TTAAAAATATTCTGTTCTACattttataactgaaaatatatTAGCCTGGC
ACCATTTTTAATTGCTTATTTCATCTTTTGCAATAGCAATAAAATACCAA
ATATAGTGTCTTTAAACGTTTTCTAGAAAAAATCAATGCTTAATGAGCAA
AAACGGTAAAAC Run BLAST on NCBI transcript from alignment at scaffold_185:234060..237171+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050741 ID=TCONS_00050741|Name=TCONS_00050741|organism=Clytia hemisphaerica|type=transcript|length=3112bp|location=Sequence derived from alignment at scaffold_185:234060..237171+ (Clytia hemisphaerica)
CATATGTACACTTCATAAAGTAGAACTTGTCAAAACATGACATGATGGGT
CATGAAATATTAATCAGCggaagtcagcaaaaaaaaaccTGCTACTTGaa
tcaatattttgacaaataataTAAAACAAAACGCGCTTCATAGCAgtgat
ttattttcaaaatttcaaagattatatcctttagaaaaagaaatctaaaa
taaaaatgcAGAATGTCTTTGACCTGGAAAGGCCAAAACATAGCTTTCTA
TATAGTGGATATTTTGCAAACAAAGTTAAAAAGTATAAGAAGAGAGGTAG
GTGGAAACCCTTTTAAAAACagtgggctcttccagaaaaaatccgttccc
GAGGATGGAGGATTATATTATTCCAATAATTTGTCCATTAACGTATTCCA
TTTTTTAcacctacaatcatggtcgaaatatattgacattttagtgcatt
ttaaagtttttcataatttaaagttcgggcgagaattgctattttagcac
ttccactttctttcattgattatttcgattttagaggggttcggtggctt
ctaggctatattccaagccttattcgagcaaatttgagcttttaaatcct
gagatcctaaggtcctaaactcagagttaaaactctactttccaactgta
gtttaaggcgcttaaaaatcatttgtggtgtttaaaatttcgccgggaaa
tcccctttgtctcaaatattttgtccatgattgtagccACGTGTATGTTT
TGTCACTTGAGAAAGCATCATGGAACCCCTGGAAACTAAAATTTAAACAT
TGTTCNCTTTTGTCACTTGAGAAAGCATCATGGAACCCCTGGAAACTAAA
ATTTAACCCCGAACATTGTTCTAGAGGTTGTGGAAGAAAGCTAATGCTTC
CCCTTTTTGGCACATTGCTTTACCATCCTGAcaatatcttttgaaaattg
ctgTTCTCTGACACCTGTATATCCAGGAAAATGATTCAAGTCTACAACAG
CATAATCTCCTTGAAGGTCTTTCAATATATCAACTCCATATAATTTCAAA
TCCGCATAATCAGATATCTTATTATGAATAGCCCGAAGCACAACATTATC
AAGCAAAAGAGGGTCTTCCTCATAAGAATGCCATGTTCGTGTCCTAGGAT
CTCGTTCGTGTAGTTCTGGGTTAAAATTATTCcctatttttgatatttgt
cttgtatcaaaagttaaacTGTTTTGTTTGTTAACACACTCTATATTCTT
TACAGAAGGTCTTTCAAAGACACTTATCTGATCTCCAATGACAAACATCT
TATACAAAACACCACTATGGTTACAAAACTCTTGCAATAAGCAAGGGTAT
GTAATATCACGTAACTGTTCCatggaaaaaataataataaacttGTGTGC
ATCTACCGCTTTGCAGGCTGGTAACGGCTTCACCAAAATAGGAAATTTCA
TATCACAAGATAAAATCTGTTTCTGCATATGTTCGATAGTAGAAAGATTG
TTGTCCAAATCACATAATTCTAAAGATTTAGGTGCATACACTGAAATACC
ATTGACGTTTAAAGCACATTCCTTCAAAATCTCTAATTGATATGTACGGT
TCATTAGCCTTTGGACAAGCTTGAAGTCATCAATAACGTACGTATTAGGA
AAGCGTTGAGCATAATTCGACAATACTCCAATCATCTGTtcgactttttc
aaaacttgaattTTTCTTGTAAAGATCTGAAACTTTGTGTAAGATAACAT
CAAATGGCCCTTGATCTTCCATGTTATTGTCAAGNCTTTTGTCACTTGAG
AAAGCATCATGGAACCCCTGGAAACTAAAATTTAACCCCGAACATTGTTC
TAGAGGTTGTGGAAGAAAGCTAATGCTTCCCCTTTTTGGCACATTGCTTT
ACCATCCTGAcaatatcttttgaaaattgctgTTCTCTGACACCTGTATA
TCCAGGAAAATGATTCAAGTCTACAACAGCATAATCTCCTTGAAGGTCTT
TCAATATATCAACTCCATATAATTTCAAATCCGCATAATCAGATATCTTA
TTATGAATAGCCCGAAGCACAACATTATCAAGCAAAAGAGGGTCTTCCTC
ATAAGAATGCCATGTTCGTGTCCTAGGATCTCGTTCGTGTAGTTCTGGGT
TAAAATTATTCcctatttttgatatttgtcttgtatcaaaagttaaacTG
TTTTGTTTGTTAACACACTCTATATTCTTTACAGAAGGTCTTTCAAAGAC
ACTTATCTGATCTCCAATGACAAACATCTTATACAAAACACCACTATGGT
TACAAAACTCTTGCAATAAGCAAGGGTATGTAATATCACGTAACTGTTCC
atggaaaaaataataataaacttGTGTGCATCTACCGCTTTGCAGGCTGG
TAACGGCTTCACCAAAATAGGAAATTTCATATCACAAGATAAAATCTGTT
TCTGCATATGTTCGATAGTAGAAAGATTGTTGTCCAAATCACATAATTCT
AAAGATTTAGGTGCATACACTGAAATACCATTGACGTTTAAAGCACATTC
CTTCAAAATCTCTAATTGATATTTACGGTTCATTAGCCTTTGGACAAGCT
TGAAGTCATCAATAACGTACGTATTAGGAAAGCGTTGAGCATAATTCGAC
AATACTCCGATCATctgttcaactttttcaaaacttgaattTTTCTTGTA
AAGATCTGAAACTTTGTGTAAGATAACATCAAATGGCCCTTGATCTTCCA
TGTTATTGtcaagattaatttttgtaattttgattgATTCTTGATCACAT
AGATCTTGGATACACTCTGGTataattttcttccttttacaAGGCATTAG
AACACCCAAATGTATTGGTTTAACTTCAAAGTCCATGTTTTACAAAGTTG
TTCTCTGAAAATGATAAAGTTTAAACACCAAAATGACTGTAAGAAGACTG
TTAAAAATATTCTGTTCTACattttataactgaaaatatatTAGCCTGGC
ACCATTTTTAATTGCTTATTTCATCTTTTGCAATAGCAATAAAATACCAA
ATATAGTGTCTTTAAACGTTTTCTAGAAAAAATCAATGCTTAATGAGCAA
AAACGGTAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050741-exon-scaffold_185-1491911889:234060..237171 | TCONS_00050741-exon-scaffold_185-1491911889:234060..237171 | Clytia hemisphaerica | exon |
| TCONS_00050741-exon-scaffold_185-1510915933:234060..237171 | TCONS_00050741-exon-scaffold_185-1510915933:234060..237171 | Clytia hemisphaerica | exon |
| TCONS_00050741-exon-scaffold_185-1575043694:234060..237171 | TCONS_00050741-exon-scaffold_185-1575043694:234060..237171 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:234060..237171 + |
Blast
BLAST of TCONS_00050741 vs. Swiss-Prot (Human)
Match: ITPK1 (Inositol-tetrakisphosphate 1-kinase OS=Homo sapiens GN=ITPK1 PE=1 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 1.343e-34 Identity = 88/305 (28.85%), Postives = 161/305 (52.79%), Query Frame = -2
Query: 1933 KRKKIIPECIQDLCDQESIKITKINLDNNMEDQGPFDVILHKVSD-LYKKNSSFEKVEQMIGVLSNYAQRFPNTYVIDDFKLVQRLMNRKYQLEILKECALNVNGISVYAPKSLELCDLDNNLSTIEHMQKQILSCDMKFPILVKPLPACKAVDAHKFIIIFSMEQLRDITYPCLLQEFCNHSGVLYKMFVIGDQISVFERPSVKNIEC-VNKQNSLTFDTRQISKIGNNFNPELHERDPRTRTWHSYEEDPLLLDNVVLRAIHNKISDYADLKLYGVDILKDLQ-GDYAVVDLNHFPGYTGVRE 2838
K KK+ + +LC + +++ ++NL +E+QGP DVI+HK++D + + + + + +++ Y P T V+D ++ L++R E++++ + + +P +EL L + T+ ++K L+ FP + K A ++H+ I+F+ E L I PC++Q F NH+ VLYK+FV+G+ +V +RPS+KN + + S+ F++ +SK PE E P + V+R + + + L+G+DI+ + Q G +AV+D+N FPGY GV E
Sbjct: 18 KIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGD-DTMRLLEKNGLT----FPFICKTRVA-HGTNSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSK------PESSSVLTELDKIEGVFERP---SDEVIRELSRALRQALGVSLFGIDIIINNQTGQHAVIDINAFPGYEGVSE 307 HSP 2 Score: 127.102 bits (318), Expect = 8.919e-31 Identity = 82/280 (29.29%), Postives = 147/280 (52.50%), Query Frame = -3
Query: 954 LDNNMEDQGPFDVILHKVSD-LYKKNSSFEKVEQMIGVLSNYAQRFPNTYVIDDFKLVQRLMNRTYQLEILKECALNVNGISVYAPKSLELCDLDNNLSTIEHMQKQILSCDMKFPILVKPLPACKAVDAHKFIIIFSMEQLRDITYPCLLQEFCNHSGVLYKMFVIGDQISVFERPSVKNIEC-VNKQNSLTFDTRQISKIGNNFNPELHERDPRTRTWHSYEEDPLLLDNVVLRAIHNKISDYADLKLYGVDILKDLQ-GDYAVVDLNHFPGYTGVRE 1784
L +E+QGP DVI+HK++D + + + + + +++ Y P T V+D ++ L++R+ E++++ + + +P +EL L + T+ ++K L+ FP + K A ++H+ I+F+ E L I PC++Q F NH+ VLYK+FV+G+ +V +RPS+KN + + S+ F++ +SK PE E P + V+R + + + L+G+DI+ + Q G +AV+D+N FPGY GV E
Sbjct: 43 LSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGD-DTMRLLEKNGLT----FPFICKTRVA-HGTNSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSK------PESSSVLTELDKIEGVFERP---SDEVIRELSRALRQALGVSLFGIDIIINNQTGQHAVIDINAFPGYEGVSE 307
The following BLAST results are available for this feature:
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