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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050742 ID=TCONS_00050742|Name=TCONS_00050742|organism=Clytia hemisphaerica|type=transcript|length=1545bp
gttcgggcgagaattgctattttagcacttccactttctttcattgatta
tttcgattttagaggggttcggtggcttctaggctatattccaagcctta
ttcgagcaaatttgagcttttaaatcctgagatcctaaggtcctaaactc
agagttaaaactctactttccaactgtagtttaaggcgcttaaaaatcat
ttgtggtgtttaaaatttcgccgggaaatcccctttgtctcaaatatttt
gtccatgattgtagccACGTGTATGTTTTGTCACTTGAGAAAGCATCATG
GAACCCCTGGAAACTAAAATTTAAACATTGTTCTAGAGGTTGTGGAAGAA
AGCTAATGCTTCCCCTTTTTGGCACATTGCTTTACCATCCTGAcaatatc
ttttgaaaattgctgTTCTCTGACACCTGTATATCCAGGAAAATGATTCA
AGTCTACAACAGCATAATCTCCTTGAAGGTCTTTCAATATATCAACTCCA
TATAATTTCAAATCCGCATAATCAGATATCTTATTATGAATAGCCCGAAG
CACAACATTATCAAGCAAAAGAGGGTCTTCCTCATAAGAATGCCATGTTC
GTGTCCTAGGATCTCGTTCGTGTAGTTCTGGGTTAAAATTATTCcctatt
tttgatatttgtcttgtatcaaaagttaaacTGTTTTGTTTGTTAACACA
CTCTATATTCTTTACAGAAGGTCTTTCAAAGACACTTATCTGATCTCCAA
TGACAAACATCTTATACAAAACACCACTATGGTTACAAAACTCTTGCAAT
AAGCAAGGGTATGTAATATCACGTAACTGTTCCatggaaaaaataataat
aaacttGTGTGCATCTACCGCTTTGCAGGCTGGTAACGGCTTCACCAAAA
TAGGAAATTTCATATCACAAGATAAAATCTGTTTCTGCATATGTTCGATA
GTAGAAAGATTGTTGTCCAAATCACATAATTCTAAAGATTTAGGTGCATA
CACTGAAATACCATTGACGTTTAAAGCACATTCCTTCAAAATCTCTAATT
GATATTTACGGTTCATTAGCCTTTGGACAAGCTTGAAGTCATCAATAACG
TACGTATTAGGAAAGCGTTGAGCATAATTCGACAATACTCCGATCATctg
ttcaactttttcaaaacttgaattTTTCTTGTAAAGATCTGAAACTTTGT
GTAAGATAACATCAAATGGCCCTTGATCTTCCATGTTATTGtcaagatta
atttttgtaattttgattgATTCTTGATCACATAGATCTTGGATACACTC
TGGTataattttcttccttttacaAGGCATTAGAACACCCAAATGTATTG
GTTTAACTTCAAAGTCCATGTTTTACAAAGTTGTTCTCTGAAAATGATAA
AGTTTAAACACCAAAATGACTGTAAGAAGACTGTTAAAAATATTCTGTTC
TACattttataactgaaaatatatTAGCCTGGCACCATTTTTAATTGCTT
ATTTCATCTTTTGCAATAGCAATAAAATACCAAATATAGTGTCTT Run BLAST on NCBI transcript from alignment at scaffold_185:234532..237121+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050742 ID=TCONS_00050742|Name=TCONS_00050742|organism=Clytia hemisphaerica|type=transcript|length=2590bp|location=Sequence derived from alignment at scaffold_185:234532..237121+ (Clytia hemisphaerica)
gttcgggcgagaattgctattttagcacttccactttctttcattgatta
tttcgattttagaggggttcggtggcttctaggctatattccaagcctta
ttcgagcaaatttgagcttttaaatcctgagatcctaaggtcctaaactc
agagttaaaactctactttccaactgtagtttaaggcgcttaaaaatcat
ttgtggtgtttaaaatttcgccgggaaatcccctttgtctcaaatatttt
gtccatgattgtagccACGTGTATGTTTTGTCACTTGAGAAAGCATCATG
GAACCCCTGGAAACTAAAATTTAAACATTGTTCNCTTTTGTCACTTGAGA
AAGCATCATGGAACCCCTGGAAACTAAAATTTAACCCCGAACATTGTTCT
AGAGGTTGTGGAAGAAAGCTAATGCTTCCCCTTTTTGGCACATTGCTTTA
CCATCCTGAcaatatcttttgaaaattgctgTTCTCTGACACCTGTATAT
CCAGGAAAATGATTCAAGTCTACAACAGCATAATCTCCTTGAAGGTCTTT
CAATATATCAACTCCATATAATTTCAAATCCGCATAATCAGATATCTTAT
TATGAATAGCCCGAAGCACAACATTATCAAGCAAAAGAGGGTCTTCCTCA
TAAGAATGCCATGTTCGTGTCCTAGGATCTCGTTCGTGTAGTTCTGGGTT
AAAATTATTCcctatttttgatatttgtcttgtatcaaaagttaaacTGT
TTTGTTTGTTAACACACTCTATATTCTTTACAGAAGGTCTTTCAAAGACA
CTTATCTGATCTCCAATGACAAACATCTTATACAAAACACCACTATGGTT
ACAAAACTCTTGCAATAAGCAAGGGTATGTAATATCACGTAACTGTTCCa
tggaaaaaataataataaacttGTGTGCATCTACCGCTTTGCAGGCTGGT
AACGGCTTCACCAAAATAGGAAATTTCATATCACAAGATAAAATCTGTTT
CTGCATATGTTCGATAGTAGAAAGATTGTTGTCCAAATCACATAATTCTA
AAGATTTAGGTGCATACACTGAAATACCATTGACGTTTAAAGCACATTCC
TTCAAAATCTCTAATTGATATGTACGGTTCATTAGCCTTTGGACAAGCTT
GAAGTCATCAATAACGTACGTATTAGGAAAGCGTTGAGCATAATTCGACA
ATACTCCAATCATCTGTtcgactttttcaaaacttgaattTTTCTTGTAA
AGATCTGAAACTTTGTGTAAGATAACATCAAATGGCCCTTGATCTTCCAT
GTTATTGTCAAGNCTTTTGTCACTTGAGAAAGCATCATGGAACCCCTGGA
AACTAAAATTTAACCCCGAACATTGTTCTAGAGGTTGTGGAAGAAAGCTA
ATGCTTCCCCTTTTTGGCACATTGCTTTACCATCCTGAcaatatcttttg
aaaattgctgTTCTCTGACACCTGTATATCCAGGAAAATGATTCAAGTCT
ACAACAGCATAATCTCCTTGAAGGTCTTTCAATATATCAACTCCATATAA
TTTCAAATCCGCATAATCAGATATCTTATTATGAATAGCCCGAAGCACAA
CATTATCAAGCAAAAGAGGGTCTTCCTCATAAGAATGCCATGTTCGTGTC
CTAGGATCTCGTTCGTGTAGTTCTGGGTTAAAATTATTCcctatttttga
tatttgtcttgtatcaaaagttaaacTGTTTTGTTTGTTAACACACTCTA
TATTCTTTACAGAAGGTCTTTCAAAGACACTTATCTGATCTCCAATGACA
AACATCTTATACAAAACACCACTATGGTTACAAAACTCTTGCAATAAGCA
AGGGTATGTAATATCACGTAACTGTTCCatggaaaaaataataataaact
tGTGTGCATCTACCGCTTTGCAGGCTGGTAACGGCTTCACCAAAATAGGA
AATTTCATATCACAAGATAAAATCTGTTTCTGCATATGTTCGATAGTAGA
AAGATTGTTGTCCAAATCACATAATTCTAAAGATTTAGGTGCATACACTG
AAATACCATTGACGTTTAAAGCACATTCCTTCAAAATCTCTAATTGATAT
TTACGGTTCATTAGCCTTTGGACAAGCTTGAAGTCATCAATAACGTACGT
ATTAGGAAAGCGTTGAGCATAATTCGACAATACTCCGATCATctgttcaa
ctttttcaaaacttgaattTTTCTTGTAAAGATCTGAAACTTTGTGTAAG
ATAACATCAAATGGCCCTTGATCTTCCATGTTATTGtcaagattaatttt
tgtaattttgattgATTCTTGATCACATAGATCTTGGATACACTCTGGTa
taattttcttccttttacaAGGCATTAGAACACCCAAATGTATTGGTTTA
ACTTCAAAGTCCATGTTTTACAAAGTTGTTCTCTGAAAATGATAAAGTTT
AAACACCAAAATGACTGTAAGAAGACTGTTAAAAATATTCTGTTCTACat
tttataactgaaaatatatTAGCCTGGCACCATTTTTAATTGCTTATTTC
ATCTTTTGCAATAGCAATAAAATACCAAATATAGTGTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050742-exon-scaffold_185-1491911889:234532..234857 | TCONS_00050742-exon-scaffold_185-1491911889:234532..234857 | Clytia hemisphaerica | exon |
| TCONS_00050742-exon-scaffold_185-1510915933:234532..234857 | TCONS_00050742-exon-scaffold_185-1510915933:234532..234857 | Clytia hemisphaerica | exon |
| TCONS_00050742-exon-scaffold_185-1575043694:234532..234857 | TCONS_00050742-exon-scaffold_185-1575043694:234532..234857 | Clytia hemisphaerica | exon |
| TCONS_00050742-exon-scaffold_185-1491911889:235903..237121 | TCONS_00050742-exon-scaffold_185-1491911889:235903..237121 | Clytia hemisphaerica | exon |
| TCONS_00050742-exon-scaffold_185-1510915933:235903..237121 | TCONS_00050742-exon-scaffold_185-1510915933:235903..237121 | Clytia hemisphaerica | exon |
| TCONS_00050742-exon-scaffold_185-1575043694:235903..237121 | TCONS_00050742-exon-scaffold_185-1575043694:235903..237121 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:234532..237121 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008656 | Inositol_tetrakis-P_1-kinase |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0052726 | inositol-1,3,4-trisphosphate 5-kinase activity |
| GO:0052725 | inositol-1,3,4-trisphosphate 6-kinase activity |
| GO:0005524 | ATP binding |
| GO:0000287 | magnesium ion binding |
| GO:0047325 | inositol tetrakisphosphate 1-kinase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0032957 | inositol trisphosphate metabolic process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0032957 |
inositol trisphosphate metabolic process |
| cellular_component |
GO:0005622 |
intracellular |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0052726 |
inositol-1,3,4-trisphosphate 5-kinase activity |
| molecular_function |
GO:0052725 |
inositol-1,3,4-trisphosphate 6-kinase activity |
| molecular_function |
GO:0047325 |
inositol tetrakisphosphate 1-kinase activity |
| molecular_function |
GO:0000287 |
magnesium ion binding |
Blast
BLAST of TCONS_00050742 vs. Swiss-Prot (Human)
Match: ITPK1 (Inositol-tetrakisphosphate 1-kinase OS=Homo sapiens GN=ITPK1 PE=1 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 6.378e-36 Identity = 88/305 (28.85%), Postives = 161/305 (52.79%), Query Frame = -3
Query: 416 KRKKIIPECIQDLCDQESIKITKINLDNNMEDQGPFDVILHKVSD-LYKKNSSFEKVEQMIGVLSNYAQRFPNTYVIDDFKLVQRLMNRKYQLEILKECALNVNGISVYAPKSLELCDLDNNLSTIEHMQKQILSCDMKFPILVKPLPACKAVDAHKFIIIFSMEQLRDITYPCLLQEFCNHSGVLYKMFVIGDQISVFERPSVKNIEC-VNKQNSLTFDTRQISKIGNNFNPELHERDPRTRTWHSYEEDPLLLDNVVLRAIHNKISDYADLKLYGVDILKDLQ-GDYAVVDLNHFPGYTGVRE 1321
K KK+ + +LC + +++ ++NL +E+QGP DVI+HK++D + + + + + +++ Y P T V+D ++ L++R E++++ + + +P +EL L + T+ ++K L+ FP + K A ++H+ I+F+ E L I PC++Q F NH+ VLYK+FV+G+ +V +RPS+KN + + S+ F++ +SK PE E P + V+R + + + L+G+DI+ + Q G +AV+D+N FPGY GV E
Sbjct: 18 KIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGD-DTMRLLEKNGLT----FPFICKTRVA-HGTNSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSK------PESSSVLTELDKIEGVFERP---SDEVIRELSRALRQALGVSLFGIDIIINNQTGQHAVIDINAFPGYEGVSE 307
The following BLAST results are available for this feature:
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