TCONS_00050745 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050745
Unique NameTCONS_00050745
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050745 ID=TCONS_00050745|Name=TCONS_00050745|organism=Clytia hemisphaerica|type=transcript|length=623bp
CTTTGCTTCCACTATTGAAACATTCACTGAAACTGCCAAAGCTTTTAAAG
GAAAGGTATTGTTCATCTACATTGATACTGATGTCGAAGACAATGGACGT
ATCTTGGAATTCTTTGGACTTAAAGCTGCTGATGCACCAACTATGAGACT
TATCAAATTGGAAGGAGACATGACCAAATTCGTTCCAGAATCAAATGAAC
TTTCAGTTGAAAAAATCACATCTTTCGTTCAAGCCTATTTGGATGGAACC
TTGAAACCATTCTTGATGAGCGCTGACATCCCAGAAGATTGGGACAAAAA
CCCAGTCAAGGTTCTCGTCGGAAAGAACTTCAAGGAAGTCGCCATGTCAG
CAGAAAAGAATGTCTTAGTTgaattttacgCACCATGGTGTGGCCACTGC
AAACAATTGGTTCCAATCTGGGACAAACTTGGAGAAAAATTTAAAGACTC
TGCTGATATTGTCATTGCTAAGATGGACTCGACTGCCAACGAAGTTGAAG
AAGTCAAAGTTCAATCTTTCCCAACTATCAAATATTTTCCCAAAGAAGGA
GGAGTAAGTGTTAATTATTATATGGAAGATTTTTAATGTTCGTAGTGGGA
Tctacagtacacgtttttttttt
Run BLAST on NCBI

transcript from alignment at scaffold_185:245143..246050+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050745 ID=TCONS_00050745|Name=TCONS_00050745|organism=Clytia hemisphaerica|type=transcript|length=908bp|location=Sequence derived from alignment at scaffold_185:245143..246050+ (Clytia hemisphaerica)
CTTTGCTTCCACTATTGAAACGTAAGACTTGGATTAATTTTCTTTCGTAT
GTTTCTGGGTGAAATTTTGTCTCGATAACATTAGAAATTCAAGGTGAATT
TGTAAAAATCAACTCAACTAGGACGATGTCATTATGgttttaatatttaa
tatttgctttattttcaGATTCACTGAAACTGCCAAAGCTTTTAAAGGAA
AGGTATTGTTCATCTACATTGATACTGATGTCGAAGACAATGGACGTATC
TTGGAATTCTTTGGACTTAAAGCTGCTGATGCACCAACTATGAGACTTAT
CAAATTGGAAGGAGACATGACCAAATTCGTTCCAGAATCAAATGAACTTT
CAGTTGAAAAAATCACATCTTTCGTTCAAGCCTATTTGGATGGAACCTTG
AAACCATTCTTGATGAGCGCTGACATCCCAGAAGATTGGGACAAAAACCC
AGTCAAGGTTCTCGTCGGAAAGAACTTCAAGGAAGTCGCCATGTCAGCAG
AAAAGAATGTCTTAGTTgaattttgtaagtattttccATCCCTTCACTAT
TTGCAAACATTAAAATGATTAAGTGAAAGTCCTGAATTGAGAAGAGAGTT
ATTGAAGATactatatattattttatggACTTCCATTTCgaatttatgtt
ttttatttttagacgCACCATGGTGTGGCCACTGCAAACAATTGGTTCCA
ATCTGGGACAAACTTGGAGAAAAATTTAAAGACTCTGCTGATATTGTCAT
TGCTAAGATGGACTCGACTGCCAACGAAGTTGAAGAAGTCAAAGTTCAAT
CTTTCCCAACTATCAAATATTTTCCCAAAGAAGGAGGAGTAAGTGTTAAT
TATTATATGGAAGATTTTTAATGTTCGTAGTGGGATctacagtacacgtt
tttttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032142XLOC_032142Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050745-exon-scaffold_185-1491911889:245143..245163TCONS_00050745-exon-scaffold_185-1491911889:245143..245163Clytia hemisphaericaexon
TCONS_00050745-exon-scaffold_185-1510915933:245143..245163TCONS_00050745-exon-scaffold_185-1510915933:245143..245163Clytia hemisphaericaexon
TCONS_00050745-exon-scaffold_185-1575043694:245143..245163TCONS_00050745-exon-scaffold_185-1575043694:245143..245163Clytia hemisphaericaexon
TCONS_00050745-exon-scaffold_185-1491911889:245311..245666TCONS_00050745-exon-scaffold_185-1491911889:245311..245666Clytia hemisphaericaexon
TCONS_00050745-exon-scaffold_185-1510915933:245311..245666TCONS_00050745-exon-scaffold_185-1510915933:245311..245666Clytia hemisphaericaexon
TCONS_00050745-exon-scaffold_185-1575043694:245311..245666TCONS_00050745-exon-scaffold_185-1575043694:245311..245666Clytia hemisphaericaexon
TCONS_00050745-exon-scaffold_185-1491911889:245805..246050TCONS_00050745-exon-scaffold_185-1491911889:245805..246050Clytia hemisphaericaexon
TCONS_00050745-exon-scaffold_185-1510915933:245805..246050TCONS_00050745-exon-scaffold_185-1510915933:245805..246050Clytia hemisphaericaexon
TCONS_00050745-exon-scaffold_185-1575043694:245805..246050TCONS_00050745-exon-scaffold_185-1575043694:245805..246050Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_185supercontigscaffold_185:245143..246050 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1242.31	1236.82	1057.7	1020.6	255.265	214.864	1966.9	1940.91	1923.78	1812.63	1304.68	2143.47	1108.28	914.961	1322.74	1342.36	926.071	978.116	610.325	924.763	476.758	505.616	969.757	921.76	500.045	531.794	889.287	838.543	990.274	811.804
Blast
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BLAST of TCONS_00050745 vs. Swiss-Prot (Human)
Match: PDIA1 (Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3)

HSP 1 Score: 258.07 bits (658), Expect = 8.984e-83
Identity = 119/190 (62.63%), Postives = 145/190 (76.32%), Query Frame = 2 
Query:    2 FASTIETFTETAKAFKGKVLFIYIDTDVEDNGRILEFFGLKAADAPTMRLIKLEGDMTKFVPESNELSVEKITSFVQAYLDGTLKPFLMSADIPEDWDKNPVKVLVGKNFKEVAMSAEKNVLVEFYAPWCGHCKQLVPIWDKLGEKFKDSADIVIAKMDSTANEVEEVKVQSFPTIKYFPKEGGVSVNYY 571
            +   +  F   A++FKGK+LFI+ID+D  DN RILEFFGLK  + P +RLI LE +MTK+ PES EL+ E+IT F   +L+G +KP LMS ++PEDWDK PVKVLVGKNF++VA   +KNV VEFYAPWCGHCKQL PIWDKLGE +KD  +IVIAKMDSTANEVE VKV SFPT+K+FP     +V  Y
Sbjct:  268 YDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPASADRTVIDY 457

HSP 2 Score: 77.0258 bits (188), Expect = 2.990e-16
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 2 
Query:  272 ADIPEDWDKNPVKVLVGKNFKEVAMSAEKNVLVEFYAPWCGHCKQLVPIWDKLGEKFK-DSADIVIAKMDST--ANEVEEVKVQSFPTIKYF 538
            AD PE+ D   V VL   NF E A++A K +LVEFYAPWCGHCK L P + K   K K + ++I +AK+D+T  ++  ++  V+ +PTIK+F
Sbjct:   17 ADAPEEEDH--VLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFF 105
The following BLAST results are available for this feature:
BLAST of TCONS_00050745 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDIA18.984e-8362.63Protein disulfide-isomerase OS=Homo sapiens GN=P4H... [more]
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