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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050823 ID=TCONS_00050823|Name=TCONS_00050823|organism=Clytia hemisphaerica|type=transcript|length=821bp
GTGCGGACATCCTTTGGGCGTGGCTTGGCAACGTTACTCATGCGATTTAC
GTTCTGGTCTGTCATTTATTATCAACTTGTCAAATTCGGGTCTTCATTTT
AGCCGTTACAAATATGGCAACGTATACGTCATTAGATTTTATCGTTTTAG
TTGGTTTGGATAGATTTTTACATATCTACTATTTGAACGATTACAACAGC
AAATTTTCACCAGCAAGATTTAAGAAAGTTTTGATTGGATTTCTGGTCAT
CATGTTGCTACAATCTCTAGCAGGTATTCTCTTTGACCCTGGCAAATACA
AAGGATACATCTCACTACCAATCAACATCGTCCTTATAATAGGAACAATT
GGTATGTACGCTCATTCACTGTATAAgctgaaaaatcatcaaaagaaCAA
TAAACATCTATCACCGAACGGGCGAAGTGTAGTCAAAATCGGATCAATAT
ATCTATTGATCATTCTAATCAGTTTCATGCCTGCTCTTTGCATACAANTG
GATCAATATATCTACTGATCATTTTAATCAGTTTCATGCCTGCTCTTTGC
ATACAAATGTTATACGAGATTatattgaaaaaacaaaatggtgAATGGTT
ATTAGGGGTTTTTTTACCAGCCAGTATAATGTGGACAAACTGTGGTAGTT
TGGCGAACGCTGTAGTGTTTTTAATGAATAATGTAAAAGCTAAAGATTTC
ATTATAAATGAATGTGATTGGCAGAGGTGGATCTTTTGGAGACGAAATCG
AGTGCAAGTCATTGAACCGACAATTGATAAAGCGTCGGAAAGAGATTCGA
GTGTTTGACCGCATTCAGACG Run BLAST on NCBI protein sequence of TCONS_00050823-protein >TCONS_00050823-protein ID=TCONS_00050823-protein|Name=TCONS_00050823-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
ADILWAWLGNVTHAIYVLVCHLLSTCQIRVFILAVTNMATYTSLDFIVLV
GLDRFLHIYYLNDYNSKFSPARFKKVLIGFLVIMLLQSLAGILFDPGKYK
GYISLPINIVLIIGTIGMYAHSLYKLKNHQKNNKHLSPNGRSVVKIGSIY
LLIILISFMPALCIQXDQYIY Run BLAST on NCBI transcript from alignment at scaffold_189:266505..267807- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050823 ID=TCONS_00050823|Name=TCONS_00050823|organism=Clytia hemisphaerica|type=transcript|length=1303bp|location=Sequence derived from alignment at scaffold_189:266505..267807- (Clytia hemisphaerica)
GTGCGGACATCCTTTGGGCGTGGCTTGGCAACGTTACTCATGCGATTTAC
GTTCTGGTCTGTCATTTATTATCAACTTGTCAAATTCGGGTCTTCATTTT
AGCCGTTACAAATATGGCAACGTATACGTCATTAGATTTTATCGTTTTAG
TTGGTTTGGATAGATTTTTACATATCTACTATTTGAACGATTACAACAGC
AAATTTTCACCAGCAAGATTTAAGAAAGTTTTGATTGGATTTCTGGTCAT
CATGTTGCTACAATCTCTAGCAGGTCAGTAGATTTACTATTTGATTTCAA
GTGTGCAATTCAGGTCATAAATACTTTTTGAGCAGAGCTGGTAGAAATCA
CTATCACAGTTAATTAAAAAAACTTGAAGTAGCTCTCTATCCAGAATTTT
CGTAGACTTTCTCAAAACAATATCATTTTACAACCGACTCTCTATAACTC
GAATCTCTCCATAATTAAAACAACCCTCAAGCGATTTTTTGATTTTTCTA
ACTCGAATCCTTTAAGACTAATCTTCTTAAGTCTCTAAGAATAATCAATG
CGATTTTCTAAGGCAGTCGAGCAATTGTGAGTCTAAGTGAGTGAGTGTGA
GTTCTAATGAATCTAACTGTTCTGTTCTAATCCCCATTGGGATTTCAATT
GGAATTTTTATCCCCATTAAGGAAAAAAGTTCGACCAGGGCTGTGAGACA
GGGGTGTGTGATCAAAGAATCACTGGTACGAAAATTCTTCTCTATTCACA
TTCAGGTATTCTCTTTGACCCTGGCAAATACAAAGGATACATCTCACTAC
CAATCAACATCGTCCTTATAATAGGAACAATTGGTATGTACGCTCATTCA
CTGTATAAGCTGAAAAATCATCAAAAGAACAATAAACATCTATCACCGAA
CGGGCGAAGTGTAGTCAAAATCGGATCAATATATCTATTGATCATTCTAA
TCAGTTTCATGCCTGCTCTTTGCATACAANTGGATCAATATATCTACTGA
TCATTTTAATCAGTTTCATGCCTGCTCTTTGCATACAAATGTTATACGAG
ATTATATTGAAAAAACAAAATGGTGAATGGTTATTAGGGGTTTTTTTACC
AGCCAGTATAATGTGGACAAACTGTGGTAGTTTGGCGAACGCTGTAGTGT
TTTTAATGAATAATGTAAAAGCTAAAGATTTCATTATAAATGAATGTGAT
TGGCAGAGGTGGATCTTTTGGAGACGAAATCGAGTGCAAGTCATTGAACC
GACAATTGATAAAGCGTCGGAAAGAGATTCGAGTGTTTGACCGCATTCAG
ACG Coding sequence (CDS) from alignment at scaffold_189:266505..267807- >TCONS_00050823 ID=TCONS_00050823|Name=TCONS_00050823|organism=Clytia hemisphaerica|type=CDS|length=1032bp|location=Sequence derived from alignment at scaffold_189:266505..267807- (Clytia hemisphaerica)
GTATTCTCTTTGACCCTGGCAAATACAAAGGATACATCTCACTACCAATC
AACATCGTCCTTATAATAGGAACAATTGGTATGTACGCTCATTCACTGTA
TAAGCTGAAAAATCATCAAAAGAACAATAAACATCTATCACCGAACGGGC
GAAGTGTAGTCAAAATCGGATCAATATATCTATTGATCATTCTAATCAGT
TTCATGCCTGCTCTTTGCATACAANTGGATCAATATATCTACTGAGCGGA
CATCCTTTGGGCGTGGCTTGGCAACGTTACTCATGCGATTTACGTTCTGG
TCTGTCATTTATTATCAACTTGTCAAATTCGGGTCTTCATTTTAGCCGTT
ACAAATATGGCAACGTATACGTCATTAGATTTTATCGTTTTAGTTGGTTT
GGATAGATTTTTACATATCTACTATTTGAACGATTACAACAGCAAATTTT
CACCAGCAAGATTTAAGAAAGTTTTGATTGGATTTCTGGTCATCATGTTG
CTACAATCTCTAGCAGGTATTCTCTTTGACCCTGGCAAATACAAAGGATA
CATCTCACTACCAATCAACATCGTCCTTATAATAGGAACAATTGGTATGT
ACGCTCATTCACTGTATAAGCTGAAAAATCATCAAAAGAACAATAAACAT
CTATCACCGAACGGGCGAAGTGTAGTCAAAATCGGATCAATATATCTATT
GATCATTCTAATCAGTTTCATGCCTGCTCTTTGCATACAANTGGATCAAT
ATATCTACTGAGCGGACATCCTTTGGGCGTGGCTTGGCAACGTTACTCAT
GCGATTTACGTTCTGGTCTGTCATTTATTATCAACTTGTCAAATTCGGGT
CTTCATTTTAGCCGTTACAAATATGGCAACGTATACGTCATTAGATTTTA
TCGTTTTAGTTGGTTTGGATAGATTTTTACATATCTACTATTTGAACGAT
TACAACAGCAAATTTTCACCAGCAAGATTTAAGAAAGTTTTGATTGGATT
TCTGGTCATCATGTTGCTACAATCTCTAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050823-exon-scaffold_189-1575043694:267535..267807 | TCONS_00050823-exon-scaffold_189-1575043694:267535..267807 | Clytia hemisphaerica | exon |
| TCONS_00050823-exon-scaffold_189-1575043694:266505..267052 | TCONS_00050823-exon-scaffold_189-1575043694:266505..267052 | Clytia hemisphaerica | exon |
| TCONS_00050823-exon-scaffold_189-1510915933:267535..267807 | TCONS_00050823-exon-scaffold_189-1510915933:267535..267807 | Clytia hemisphaerica | exon |
| TCONS_00050823-exon-scaffold_189-1510915933:266505..267052 | TCONS_00050823-exon-scaffold_189-1510915933:266505..267052 | Clytia hemisphaerica | exon |
| TCONS_00050823-exon-scaffold_189-1491911889:267535..267807 | TCONS_00050823-exon-scaffold_189-1491911889:267535..267807 | Clytia hemisphaerica | exon |
| TCONS_00050823-exon-scaffold_189-1491911889:266505..267052 | TCONS_00050823-exon-scaffold_189-1491911889:266505..267052 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:266505..267807 - |
Blast
The following BLAST results are available for this feature:
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