TCONS_00050831 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050831
Unique NameTCONS_00050831
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4128

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050831 ID=TCONS_00050831|Name=TCONS_00050831|organism=Clytia hemisphaerica|type=transcript|length=4128bp
AGAGATTGGACTTTAataaatacaataaaaatataaagaagTGCTTATTC
AGGTCAAAAGAAGTTAGGAAAAATTGTGACACCAGATACTTGGAAATCAG
GAGCTCGAAACACTACAGaagGCGGAGGCCGAAAGGTTGGTGAAAACAAG
CTTCTCTCATCCAAAAAGAACAGgTATTTGTGCTATGTGTGGTAAACAAG
TGCTCAGTACCAAAGAATATCGTCAATCATCTGCTTAAAACAATCTTCGT
TCAATCGTAACAGAAtccatttttgttaaaattattaaataaaGACAGTA
TAAAACAATATAAAGTTTTTGTATGAACTTGCAGTAAATTCATCATGAAA
TTAGATGAAGTTAGTTCGCcagttttggcaaaaaaattctCAGCACCTGA
TTTCAACCCAGAAGATTATGTTAAGACAATCTTATCAAAATGTGACATTT
ACCGGACCCTGTTTGATCAACGAAATAACATACAGAAATTGGGAGAAGAA
ACAGCCGTCtctttgaagaaaaatgttTACCGGAATTATAAACAATTTAT
TGACACTGCAAAAGAAATCTCTTATCTGGAAGCCGAGATGTACCAGTTAA
GTCATCTGTTGACTGAACAGAAATCAATTCTCGCCGATCAGCTTGAAACG
GATATTTTCGAACGACCTAAAGGTTTACCAGTTGCATTGGACCCTGAAGT
CGAAGCTtatgaaaacaagaaaaaatctttcttggaGAGCATCAAAGTCA
GTAAGCAGCTGATGGACGAGTTGGAGTCTAAAGAATTGATATTGGAAGAT
CATTTAACTGAGTATGACCCTGAGACATACAGTTCCATTCAAAAAGTAGG
TGCTCACCTTGTCACCGATAACCTCATGATCACCAATGAGCCTAAAACTG
GCAAAGCTGATATCCTGACCATGTTCGATTTGTGTGATTTGGCTGTGGTT
AATGTTCGTGATGGACAGGGAGTTAAAAATGCATTCAAGATTTTATATTC
GTTGGAAACGCGAATGTTTGGAGCTTCAACCAAAGACATGAAACTGTCTT
GGTTGGATCAAATTGAACGTGCCAAGAGGAATTACAAAAAAGGCGTGCAA
ATGGATGCAGATAAGCTGGCAGAAATGCGGCAAATCCAGCAAGAAGAGAG
CGCTCAAGAGATACAACACAAAAAGGAAGAGGAGAGCCGAGCTGAAGCCG
AAATTGCCGAACAAGAAAGCCAAGCTCGTGACCAGAGTTTTCGATATCCG
AACCTGTTGAATGTGGATTGGTTGGTAGAGTTGCCAGAAGATCTAGACAT
GTGTATCGCTCAACGTGATTTCGAAGGCGCTGTCCAGCTGGTCGAAAGAG
GCCGTACGTATCTCGCGGACTTTCAAGAATCACCACCTTTGAAGGAGATT
CGAGACAAGATCGAAAGCCGGGTCGAGCAGTTGGTCACCGTATTAGAGAA
ATCGTTGGATAACTCATCTTCATCGCGTCACGTTAGCTTGCGTTCCATTC
GTGTTTACGTCCTTTTGTTAATCCGCTTGGGACGTGGAAAACTAGCCTGT
GAGCTGTTCCTTCGTAACCGTGGCTTTGAGATCAAGAACAGTTTCAAGCA
GTTGAAAATGGAAGGAGCTACTGCCATTTATGTCAGGAAACTAGCCTCTG
TTTTCTTCACCTCTGTCATCGAGACTGGGCGTGAATATAAACGGAATTTC
ACACTTAACAGCAACTGTTCTGCTTTTGTGGTGTGGTTACACAACGAGCT
CCAAAACTTCGCGGAGAAATTCACCAGACAAGTGTTTACACGGAACACCA
ATCTACAAAACGTTGGTTTGTGTATCAGTCTCGCTCTAACACAATGTCAA
CGTTTAAATAGCATCGGTATTGATCTGACCTTTGATCTTCAACACATGTT
TTTGAAAGAGGTCATGACTGCAGTGTTTGATGCACGTGATCAAATCATGG
AACGCGCAAAATCGAAAGCCATGGATGACAATTGGGTACCGATGACGTTG
GCTACTGACGAACTGGATACATTGGTTGGGGAAATCGATTCGTTGAATCT
ACAAGGATTCCAACCGTACGTTAAAGGGAATGTCATCCATTTGAGTACAT
CTACCATTAATTTCACCAAGTCTTTCCTTGTTTTCATGGTAGATGTCCTC
GGTAAATTCTACACTACCGAGATCCATGACACGCTGACGCAATGCGTACG
CGAGATCTTCAAAGCGCAGTCTATCCAGTTTGAAAGTTTGATCCGTGATC
CCAACCTGAAGGATCGTCGCCAATTCATTTATGTGAATGCTGAATTCATT
TTCGGTAAAGTGTTCAAGAAGGCTTCTGATCAGATGAAAGAATTGACAGG
TCATGAATTGGCCTCCCTTCAACCTGTCAATAATATGAtggaaagattac
gtcatttaaAGTAGAATGAATTGATGAGGAAATCAAGTCATTGAATGGTT
GCTTGTATTTTAAACTGTCAACTTTGGTGTAAACATTGATTCgtattttt
gatcattttcttaATCATTTAATGATATTCTGTTTTACTTATAACATGAA
GAAAATCACCAGCGATCCCTAGAAAATCCTTACAAACCTTTTTCTGTAGG
TTATCTTTACTCCATTCAGTTCATTTCTTatagaatttttcagtttttat
ggTAATAAAGCTGATTGagtttaatttcatatttttttatttctttatgg
CCTTATATTGTTTGATTTAAAATTGCgatgaattttattatttttctata
aTATTTGTGGTTATTATCATTTTATTCGTTGCCAGATATGAAAATCttga
attaaaattcaattcaaatccaaaaaacacccccttctcacagaaccaTT
GGGACCCGGCTTTCCCCTGGAAACAATTTTCCAAATATCGTCTCCGCTGG
AAAATCATTCTCCGCGAATTTTtttccccattgaaaataatcaactaaac
aaatcctcactgctaaatattatgcttttttccccatccccactgaattt
tctgacttgaaaacaaaagaacacACCTTTCCCGTAGTTTCACAtagttg
tgtataaaattgtttgggaagTAAACCAAcgtgtgaaaatattttacttA
TTTTCATTGTCTTCAAAAATGCGGAACCTATTAATGCGAACGATcgaaat
cttcaattttttcgcGAGCACGAaccaaattcaaattcattaatTCAGCA
TTAATTAATTGATATAggaatatcaatctccatcgaTTTTCAGCCCGtta
tatatttttatccccactggcttaaaaaatcctaccgggtctgtgataaG
GGGGTATAAAAAAGGAGTGAATAGAGGGACCTTCCTTTCAGTTCAGACTG
tccatgaaaattttgaaaagattacgtcatgtaAAATATAACAATGAGAA
CATCTTAGATAATCAGTCTGTGCcgctaactcgatcgggaagattcttcc
gaaatgggaagaaccttccccAACGGGAAGAACCTTCCCCAACGGGAAGA
ACTTACTCTATTGTTTTCTGCCCGTtttggaagattcttcctctttggga
agttgaaaattgactgaatctcggcgaagctgtacgatgaccggcgaaag
ttgaaactttttggaggtgaagaagcatcaaattttaaggtttttcaccg
aaagaaaaGTAGACTTTACCGTAGAGATcttgttaaattgtgaaaaaact
gcgtagtcttcccaaacgggaagttccaacccgatcgaattttccttatt
ttctcGCTTCTTCCCGATCTGGAAGTCCGTTAACCCGTTTGGGTGTTAAG
TTAGATTTTCCGTTCGGGAggattcttcccatttcggaagaatcttccaa
ttttggaagaatcttcccgatcgagttagtggcacagactgatAATGACT
GATGTGATAAACTATCAAAATTGTAAAGCTTCTATGGTGGTGTTTAATgt
agaataaataaataactaAATAGTCTTGTATGTATTTGACTTTTgaacct
accgggaggtcctataaaattaacctttgtccgtccgtctgtccgtctgt
taccagcttagGTAGAATCCAAGTGAGTTGTGACACGGGGGTGTATTCAC
GATTCAATTTGTTGCTATTTTGCAAGAG
Run BLAST on NCBI

protein sequence of TCONS_00050831-protein

>TCONS_00050831-protein ID=TCONS_00050831-protein|Name=TCONS_00050831-protein|organism=Clytia hemisphaerica|type=polypeptide|length=689bp
MKLDEVSSPVLAKKFSAPDFNPEDYVKTILSKCDIYRTLFDQRNNIQKLG
EETAVSLKKNVYRNYKQFIDTAKEISYLEAEMYQLSHLLTEQKSILADQL
ETDIFERPKGLPVALDPEVEAYENKKKSFLESIKVSKQLMDELESKELIL
EDHLTEYDPETYSSIQKVGAHLVTDNLMITNEPKTGKADILTMFDLCDLA
VVNVRDGQGVKNAFKILYSLETRMFGASTKDMKLSWLDQIERAKRNYKKG
VQMDADKLAEMRQIQQEESAQEIQHKKEEESRAEAEIAEQESQARDQSFR
YPNLLNVDWLVELPEDLDMCIAQRDFEGAVQLVERGRTYLADFQESPPLK
EIRDKIESRVEQLVTVLEKSLDNSSSSRHVSLRSIRVYVLLLIRLGRGKL
ACELFLRNRGFEIKNSFKQLKMEGATAIYVRKLASVFFTSVIETGREYKR
NFTLNSNCSAFVVWLHNELQNFAEKFTRQVFTRNTNLQNVGLCISLALTQ
CQRLNSIGIDLTFDLQHMFLKEVMTAVFDARDQIMERAKSKAMDDNWVPM
TLATDELDTLVGEIDSLNLQGFQPYVKGNVIHLSTSTINFTKSFLVFMVD
VLGKFYTTEIHDTLTQCVREIFKAQSIQFESLIRDPNLKDRRQFIYVNAE
FIFGKVFKKASDQMKELTGHELASLQPVNNMMERLRHLK
Run BLAST on NCBI

transcript from alignment at scaffold_189:357909..368194-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050831 ID=TCONS_00050831|Name=TCONS_00050831|organism=Clytia hemisphaerica|type=transcript|length=10286bp|location=Sequence derived from alignment at scaffold_189:357909..368194- (Clytia hemisphaerica)
AGAGATTGGACTTTAATAAATACAATAAAAATATAAAGAAGTGCTTATTC
AGGTGTGTGATCTTGCATCTCAAATGATGCAGCATAGTTTTTCTCTCTGT
CTTTCAATTCTTTTATTTTGCTTCTTAAGCTTCAGATAGAACAAGGCAGA
CACATTAGAGGTTCTGGTTTGGAGAAAAATTGTTCTTAAAAGTTAAAATA
GAAAACATTTTTCTCAAGGTTTGTAGGGTCAGGTTCCAATGGTGGTAATC
CAGTCTGAGACTTAATTTTTGCTAATGTGGAAAAAATGTATAATCAAATT
TACTAACTAGACAAATATTGCACTATAAGCAAAAATTTTAGCCATTTTCT
ATTCCTTTGCTACAACCAAATTGACATAAGAATTTGATTGAAATATAGAG
CAAGCTGGGAAACCTATTATACTCAAATCTCAGGTCCTAAATCTCTGCCA
ATTTTAATTTTATGATATTTTGCAAATTATTGCCTGTTATTCACAACTGC
TGCCAAACAGTTCACATTTTTTATTTATGATGCTTAACTTTGTTTTCTTG
CAGGTCAAAAGAAGTTAGGAAAAATTGTGACACCAGATACTTGGAAATCA
GGAGCTCGAAACACTACAGGTATTGAATGAAGTATAAGATGATTTTATTT
TCTTGCATGTTCACAACATGTTTGGACAGCTTTCCAAAATAAGCATCCTT
TTCAGGATTGGTTTAAATGATTAGAAAGAGCAACAATAAATTTACATTTT
ACGATCACATATCCATATTAACTAGTTTTGTCATATATTTTGGCAATGTA
TAACATCATAGCATACAGTTACTCATCAAAATATTTTGTTCTAATTTGAC
CCTTGTTCAATACCTAATTTGTAACCATACAATTTTTTTATATCAAGATT
GACTAGGCTTTTTTATGCTACCTACTTTGAGGTACCTACCCCGGGGGGGG
TACTAGGGTTGGCAAATGAGGGGTATGTGCGGACGGGACCTCCGAAAACC
GACCCCTTAGAGAGACTGGTTTTTGCTGAAAAGGTGACCCTTAGAGAGAC
TTTTTGAATTTTTTTTTTCGATTTTTGAAAAAAGTCATACCCTTAAAGAG
ACTTTATCGCAATTTTTTTTTTTGATTTTTGAAAAAAGTCATACCGTTAG
AGTCATACCCTTTTTCTCTGGAAATCAAAAAATGTCTCAGAAATCCTAAA
AATTTTCGACCCTTAGAGAGACTAATTTAAAACTTTCTGGTTTTTTCGAC
CCTTAGCTAGAGATTTTGAAAGGTGAAAAAACCGACCCTTACCGTCCGCA
CATACCCATCATCCATTTTTGCCTAAGTACCCCATCCCCCGGGTACCTAC
CTTTGTCCATTTGTCTGTTGTCTTTTACCAGCCTTTCTCAAGACTGGCTG
GTGAATTTACTTCACTTCATTTTCTTTCCAGTTTCATTTGAGCTTATTTT
TTCTTGTTTTTCCCTATTTGTCTTCATCAGGTAAGTCGAATCAGGTTCCA
CCTTGTTGTATGTAAGATAATTCATTCCTTTGTCTTTTTTTTCAATTTTT
AGAAGGCGGAGGCCGAAAGGTTGGTGAAAACAAGCTTCTCTCATCCAAAA
AGAACAGGTCTGTTTGTTGAAACTTCAAAAACGAAAAAGATACCCTATTT
CTTCGCATTGAGGAAATATGATACACATACTCTTCACATTTCCCCATTTT
ATTAACATAGTTTGCAAGGGGGTTCCAGGTCCCACCTAATAATTCAGGTC
CCACCTAACCCTAAAACTCCCACCCTCAATCCAGACTCTTAGATCCCAGC
TAAAAATGCTATCCCCTCGAAAAAATTATACTAATTCGACGAACGAAACA
AAAATTCTTACAGAAAAGTAAGTTAGTAAAGTAAAGTAAAAGAATTATTT
ATAGAATATGAAATTTAGAAAAAATTATAATTAAATTGGAAATAAGAAAA
AACTAACATTAACTTTTACCAAAACACCAAAAATCCCACCTTAACTTGTT
TCTCCTACCTAAAAACTGAATATTTCCAAATCCCACCTGGAAATTTTCGA
CCCAAAACACCAAGCCACTATTCTGAGGGGGGTGCACACTATATACCGGG
TGTACCAAAAAAAAGTATACAGATTTGACGAGATATTGTGAGCTTCAGGA
TTTATATTTTTTGTTCATTCTTTTTTTATTGTATAGAGGATGCTCTAACT
TGAATTTTGAGCTATTCTCAACTTCAGTTGAGTTAGAATCTGAGAATGTG
TGTGTGTGTGTCTGTCTGTCTGTGTGTATGTCCCAAAACTTTGGGGCAGC
CTGGAGACTTCAGAAATTGTTCGATTTGGCTGAAATTTGGCACACTTGTT
CCATGGGTGAATATCTGGGGGTGCTTTTTTTCATTTTTCAAAATTTTTGA
TTTTTGGGGCCTGGGGACGAGTTTTCGCCAAAACGAGGCTAAAGCTTTGA
AGCAGCCTGGAGACTTCAAAAATTGTTCGATTCGGCTAAAATTTTGCACA
CTTGTTCCTTGGGTGAATATCTGGGGGTGCTTTTTGCATTTTTCAAAAAT
TTTGATTTTTGGGGCCTAGGGATGAGTTTTTTGCCAAAACGAGGCTAAAG
CTGTGAAGCAGCCTACAGGCCTCCAAAATGGTCGGATTTGGTTGAAATTT
GGCACACTTGTTCATTGGGTAAATATCTGGGGGTCTACAATTGGGCCTAT
GAATAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCTCTTGGAGATTCCCCAAAAAAATTTTCAGCTTTACCAAAAATATT
TTTCCACATGGGAATAGCTTGTTTTACTATATTGTTAAATTCTGTAACGA
GTTTTGATGAACACAGTTACATTTTTTGGTATTTTTATATTTAAAGAAGG
TAAGTGCCAAGAAGAAAGTTTGTTCGCTGTTTTTAATGATTTTTTGAAAT
TTCGACATTAAAAAATTGTTTTTTTGGAATAATTTTCGAATTAGTTTTTC
AAAGCTATTGTATGATAGCTCAAAATTCAAGTTAGAGCATCCTCTATGCG
ATAAAAAAAGAATGAACATAAAATTTAAATCCTGAAGCTCACAATATCTC
GACAAAGTTGTATACTTTTTTTGGTGCACCCGGTATTAGGAAGAAAAGCA
ACAGCTTTCAAGATAGTAACGTTTCATTCAAGATGGCAACACAATTTTAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAC
TTTCATTTTTATAATATCAGATTTTTTTTTAAATAGCAACTTTTTTTTAT
AATACCAACTTTTTTTATAATATCAACTTTTTTTTATAACACTAACTAAC
TAACTTTCATTTTTATAATATCAATTTTTTTGGTCTCACTTAGTCAATTT
TCTTTTTTCACCATGTAGACGGGCCTTTACAGTTCTTCACTGGAAAATCT
ACATGAGGCACATGGTCATGGATGTCCTGTCCTTGACTTGGCTGTTGGCT
GCTTGGGTAAAGGTCCAAAGACTGCTGGTAGTTCAGCTTATTTTTATCAT
TTGTGTTGTTTGGTCATTTGTGTTGGTTGGTTAAAGGTTTTGTTTCCAGC
TGTTGGTAGCGTTTTGATCTATGTATCTAGTAACGACTTCCGGTTGGCTA
GACGCAAAAATCTTTAAATTTTTTCAAAACTTTGGACCAATAATAAGTCG
TCATCAGCTCATCAGCGCGCAGTGGCCCTGATTACCCATTACGCTTTGCG
ACTGTGAAATGGCATCATCCAGTCTATCAAAAAACCTTAAGTGGTCTCCA
GGCTGCTAGGTGTAATCGCGCTAAGACTCTTTCTACACTTGATCGATTAT
ACACGCATAGTAAGCGAGACAAAAATTGGTGTTATGAAATCTAAAAAAAA
AGTTGGTACTATAAAAAGAAAGTTGGCATTATAATAAAAAAAGTTGGTAT
TATAATAAAAAAAGTTGGTATTATAAAAAAAAGTTGGTATTATAAAAAAA
AAGTTGATATTATAAAAAAAAAGTTGGCATTATAAAAAAAAAGTTGATAT
TATAAGAAAAAGTTGATATTATAAAAAAAAGTTGGTATTATAAAAAAAAG
TTAGTATTAAAAAGCCTTTTGGCGCGCCATACACTTTCTCCATTTATGCT
TTCTCTATAATTAGCTCTCTTTATTTACAATGCAAAAGCATCTTTTATTA
ACTATTGGATATGACGCAAAAAAGAATTTTTTTCTCTTCTTTTTTTCTTA
TTATTAATCATAAGGCTTATTTTGATGTTATGTGTTTTTTTTCTTTTCAT
ATTTTATCTTGCTAAGAAAAAATTATTTTCGCGCGCTAAATAATCCCGAA
ATCCTGTTTCCCGAAAATAATCCGAAATCGGAATTAAAAATAAAAGTCTT
AACGACGACGACCAGCGGGAAAAAAATCCTCGAACCGATTTGAAGAGTCA
CCGGGGCTGACTAATAATGAAGATTTTTCTACCTGACCTTTCTCTTTTGA
AACTGTGAGCTTCGCTTATTTCAATACTTTCTTGGACCAAAAATTTCAGC
CCGTTTTCAGCGCCTTCGTATTTTTTAAAGCAGGACATTTTTGAATCTTT
TTTATTGTTATTATATATTTTACTTTTTCAGGTATTTGTGCTATGTGTGG
TAAACAAGTGCTCAGTACCAAAGAATATCGTCAATCATCTGCTTAAAACA
ATCTTCGTTCAATCGTAACAGAATCCATTTTTGTTAAAATTATTAAATAA
AGACAGTATAAAACAATATAAAGTTTTTGTATGAACTTGCAGTAAATTCA
TCATGAAATTAGATGAAGTTAGTTCGCCAGTTTTGGCAAAAAAATTCTCA
GCACCTGATTTCAACCCAGAAGATTATGTTAAGACAATCTTATCAAAATG
TGACATTTACCGGACCCTGTTTGATCAACGAAATAACATACAGAAATTGG
GAGAAGAAACAGCCGTCTCTTTGAAGAAAAATGTTTACCGGAATTATAAA
CAATTTATTGACACTGCAAAAGAAATCTCTTATCTGGAAGCCGAGATGTA
CCAGTTAAGTCATCTGTTGACTGAACAGAAATCAATTCTCGCCGATCAGC
TTGAAACGGATATTTTCGAACGACCTAAAGGTTTACCAGTTGCATTGGAC
CCTGAAGTCGAAGCTTATGAAAACAAGAAAAAATCTTTCTTGGAGAGCAT
CAAAGTCAGTAAGCAGCTGATGGACGAGTTGGAGTCTAAAGAATTGATAT
TGGAAGATCATTTAACTGAGTATGACCCTGAGACATACAGTTCCATTCAA
AAAGTAGGTGCTCACCTTGTCACCGATAACCTCATGATCACCAATGAGCC
TAAAACTGGCAAAGCTGATATCCTGACCATGTTCGATTTGTGTGATTTGG
CTGTGGTTAATGTTCGTGATGGACAGGGAGTTAAAAATGCATTCAAGATT
TTATATTCGTTGGAAACGCGAATGTTTGGAGCTTCAACCAAAGACATGAA
ACTGTCTTGGTTGGATCAAATTGAACGTGCCAAGAGGAATTACAAAAAAG
GCGTGCAAATGGATGCAGATAAGCTGGCAGAAATGCGGCAAATCCAGCAA
GAAGAGAGCGCTCAAGAGATACAACACAAAAAGGAAGAGGAGAGCCGAGC
TGAAGCCGAAATTGCCGAACAAGAAAGCCAAGCTCGTGACCAGAGTTTTC
GATATCCGAACCTGTTGAATGTGGATTGGTTGGTAGAGTTGCCAGAAGAT
CTAGACATGTGTATCGCTCAACGTGATTTCGAAGGCGCTGTCCAGCTGGT
CGAAAGAGGCCGTACGTATCTCGCGGACTTTCAAGAATCACCACCTTTGA
AGGAGATTCGAGACAAGATCGAAAGCCGGGTCGAGCAGTTGGTCACCGTA
TTAGAGAAATCGTTGGATAACTCATCTTCATCGCGTCACGTTAGCTTGCG
TTCCATTCGTGTTTACGTCCTTTTGTTAATCCGCTTGGGACGTGGAAAAC
TAGCCTGTGAGCTGTTCCTTCGTAACCGTGGCTTTGAGATCAAGAACAGT
TTCAAGCAGTTGAAAATGGAAGGAGCTACTGCCATTTATGTCAGGAAACT
AGCCTCTGTTTTCTTCACCTCTGTCATCGAGACTGGGCGTGAATATAAAC
GGAATTTCACACTTAACAGCAACTGTTCTGCTTTTGTGGTGTGGTTACAC
AACGAGCTCCAAAACTTCGCGGAGAAATTCACCAGACAAGTGTTTACACG
GAACACCAATCTACAAAACGTTGGTTTGTGTATCAGTCTCGCTCTAACAC
AATGTCAACGTTTAAATAGCATCGGTATTGATCTGACCTTTGATCTTCAA
CACATGTTTTTGAAAGAGGTCATGACTGCAGTGTTTGATGCACGTGATCA
AATCATGGAACGCGCAAAATCGAAAGCCATGGATGACAATTGGGTACCGA
TGACGTTGGCTACTGACGAACTGGATACATTGGTTGGGGAAATCGATTCG
TTGAATCTACAAGGATTCCAACCGTACGTTAAAGGGAATGTCATCCATTT
GAGTACATCTACCATTAATTTCACCAAGTCTTTCCTTGTTTTCATGGTAG
ATGTCCTCGGTAAATTCTACACTACCGAGATCCATGACACGCTGACGCAA
TGCGTACGCGAGATCTTCAAAGCGCAGTCTATCCAGTTTGAAAGTTTGAT
CCGTGATCCCAACCTGAAGGATCGTCGCCAATTCATTTATGTGAATGCTG
AATTCATTTTCGGTAAAGTGTTCAAGAAGGCTTCTGATCAGATGAAAGAA
TTGACAGGTCATGAATTGGCCTCCCTTCAACCTGTCAATAATATGATGGA
AAGATTACGTCATTTAAAGTAGAATGAATTGATGAGGAAATCAAGTCATT
GAATGGTTGCTTGTATTTTAAACTGTCAACTTTGGTGTAAACATTGATTC
GTATTTTTGATCATTTTCTTAATCATTTAATGATATTCTGTTTTACTTAT
AACATGAAGAAAATCACCAGCGATCCCTAGAAAATCCTTACAAACCTTTT
TCTGTAGGTTATCTTTACTCCATTCAGTTCATTTCTTATAGAATTTTTCA
GTTTTTATGGTAATAAAGCTGATTGAGTTTAATTTCATATTTTTTTATTT
CTTTATGGCCTTATATTGTTTGATTTAAAATTGCGATGAATTTTATTATT
TTTCTATAATATTTGTGGTTATTATCATTTTATTCGTTGCCAGATATGAA
AATCTTGAATTAAAATTCAATTCAAATCCAAAAAACACCCCCTTCTCACA
GAACCATTGGGACCCGGCTTTCCCCTGGAAACAATTTTCCAAATATCGTC
TCCGCTGGAAAATCATTCTCCGCGAATTTTTTTCCCCATTGAAAATAATC
AACTAAACAAATCCTCACTGCTAAATATTATGCTTTTTTCCCCATCCCCA
CTGAATTTTCTGACTTGAAAACAAAAGAACACACCTTTCCCGTAGTTTCA
CATAGTTGTGTATAAAATTGTTTGGGAAGTAAACCAACGTGTGAAAATAT
TTTACTTATTTTCATTGTCTTCAAAAATGCGGAACCTATTAATGCGAACG
ATCGAAATCTTCAATTTTTTCGCGAGCACGAACCAAATTCAAATTCATTA
ATTCAGCATTAATTAATTGATATAGGAATATCAATCTCCATCGATTTTCA
GCCCGTTATATATTTTTATCCCCACTGGCTTAAAAAATCCTACCGGGTCT
GTGATAAGGGGGTATAAAAAAGGAGTGAATAGAGGGACCTTCCTTTCAGT
TCAGACTGTCCATGAAAATTTTGAAAAGATTACGTCATGTAAAATATAAC
AATGAGAACATCTTAGATAATCAGTCTGTGCCGCTAACTCGATCGGGAAG
ATTCTTCCGAAATGGGAAGAACCTTCCCCAACGGGAAGAACCTTCCCCAA
CGGGAAGAACTTACTCTATTGTTTTCTGCCCGTTTTGGAAGATTCTTCCT
CTTTGGGAAGTTGAAAATTGACTGAATCTCGGCGAAGCTGTACGATGACC
GGCGAAAGTTGAAACTTTTTGGAGGTGAAGAAGCATCAAATTTTAAGGTT
TTTCACCGAAAGAAAAGTAGACTTTACCGTAGAGATCTTGTTAAATTGTG
AAAAAACTGCGTAGTCTTCCCAAACGGGAAGTTCCAACCCGATCGAATTT
TCCTTATTTTCTCGCTTCTTCCCGATCTGGAAGTCCGTTAACCCGTTTGG
GTGTTAAGTTAGATTTTCCGTTCGGGAGGATTCTTCCCATTTCGGAAGAA
TCTTCCAATTTTGGAAGAATCTTCCCGATCGAGTTAGTGGCACAGACTGA
TAATGACTGATGTGATAAACTATCAAAATTGTAAAGCTTCTATGGTGGTG
TTTAATGTAGAATAAATAAATAACTAAATAGTCTTGTATGTATTTGACTT
TTGAACCTACCGGGAGGTCCTATAAAATTAACCTTTGTCCGTCCGTCTGT
CCGTCTGTTACCAGCTTAGGTAGAATCCAAGTGAGTTGTGACACGGGGGT
GTATTCACGATTCAATTTGTTGCTATTTTGCAAGAG

Coding sequence (CDS) from alignment at scaffold_189:357909..368194-

>TCONS_00050831 ID=TCONS_00050831|Name=TCONS_00050831|organism=Clytia hemisphaerica|type=CDS|length=2070bp|location=Sequence derived from alignment at scaffold_189:357909..368194- (Clytia hemisphaerica)
ATGAAATTAGATGAAGTTAGTTCGCCAGTTTTGGCAAAAAAATTCTCAGC
ACCTGATTTCAACCCAGAAGATTATGTTAAGACAATCTTATCAAAATGTG
ACATTTACCGGACCCTGTTTGATCAACGAAATAACATACAGAAATTGGGA
GAAGAAACAGCCGTCTCTTTGAAGAAAAATGTTTACCGGAATTATAAACA
ATTTATTGACACTGCAAAAGAAATCTCTTATCTGGAAGCCGAGATGTACC
AGTTAAGTCATCTGTTGACTGAACAGAAATCAATTCTCGCCGATCAGCTT
GAAACGGATATTTTCGAACGACCTAAAGGTTTACCAGTTGCATTGGACCC
TGAAGTCGAAGCTTATGAAAACAAGAAAAAATCTTTCTTGGAGAGCATCA
AAGTCAGTAAGCAGCTGATGGACGAGTTGGAGTCTAAAGAATTGATATTG
GAAGATCATTTAACTGAGTATGACCCTGAGACATACAGTTCCATTCAAAA
AGTAGGTGCTCACCTTGTCACCGATAACCTCATGATCACCAATGAGCCTA
AAACTGGCAAAGCTGATATCCTGACCATGTTCGATTTGTGTGATTTGGCT
GTGGTTAATGTTCGTGATGGACAGGGAGTTAAAAATGCATTCAAGATTTT
ATATTCGTTGGAAACGCGAATGTTTGGAGCTTCAACCAAAGACATGAAAC
TGTCTTGGTTGGATCAAATTGAACGTGCCAAGAGGAATTACAAAAAAGGC
GTGCAAATGGATGCAGATAAGCTGGCAGAAATGCGGCAAATCCAGCAAGA
AGAGAGCGCTCAAGAGATACAACACAAAAAGGAAGAGGAGAGCCGAGCTG
AAGCCGAAATTGCCGAACAAGAAAGCCAAGCTCGTGACCAGAGTTTTCGA
TATCCGAACCTGTTGAATGTGGATTGGTTGGTAGAGTTGCCAGAAGATCT
AGACATGTGTATCGCTCAACGTGATTTCGAAGGCGCTGTCCAGCTGGTCG
AAAGAGGCCGTACGTATCTCGCGGACTTTCAAGAATCACCACCTTTGAAG
GAGATTCGAGACAAGATCGAAAGCCGGGTCGAGCAGTTGGTCACCGTATT
AGAGAAATCGTTGGATAACTCATCTTCATCGCGTCACGTTAGCTTGCGTT
CCATTCGTGTTTACGTCCTTTTGTTAATCCGCTTGGGACGTGGAAAACTA
GCCTGTGAGCTGTTCCTTCGTAACCGTGGCTTTGAGATCAAGAACAGTTT
CAAGCAGTTGAAAATGGAAGGAGCTACTGCCATTTATGTCAGGAAACTAG
CCTCTGTTTTCTTCACCTCTGTCATCGAGACTGGGCGTGAATATAAACGG
AATTTCACACTTAACAGCAACTGTTCTGCTTTTGTGGTGTGGTTACACAA
CGAGCTCCAAAACTTCGCGGAGAAATTCACCAGACAAGTGTTTACACGGA
ACACCAATCTACAAAACGTTGGTTTGTGTATCAGTCTCGCTCTAACACAA
TGTCAACGTTTAAATAGCATCGGTATTGATCTGACCTTTGATCTTCAACA
CATGTTTTTGAAAGAGGTCATGACTGCAGTGTTTGATGCACGTGATCAAA
TCATGGAACGCGCAAAATCGAAAGCCATGGATGACAATTGGGTACCGATG
ACGTTGGCTACTGACGAACTGGATACATTGGTTGGGGAAATCGATTCGTT
GAATCTACAAGGATTCCAACCGTACGTTAAAGGGAATGTCATCCATTTGA
GTACATCTACCATTAATTTCACCAAGTCTTTCCTTGTTTTCATGGTAGAT
GTCCTCGGTAAATTCTACACTACCGAGATCCATGACACGCTGACGCAATG
CGTACGCGAGATCTTCAAAGCGCAGTCTATCCAGTTTGAAAGTTTGATCC
GTGATCCCAACCTGAAGGATCGTCGCCAATTCATTTATGTGAATGCTGAA
TTCATTTTCGGTAAAGTGTTCAAGAAGGCTTCTGATCAGATGAAAGAATT
GACAGGTCATGAATTGGCCTCCCTTCAACCTGTCAATAATATGATGGAAA
GATTACGTCATTTAAAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032201XLOC_032201Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050831-exon-scaffold_189-1575043694:368143..368194TCONS_00050831-exon-scaffold_189-1575043694:368143..368194Clytia hemisphaericaexon
TCONS_00050831-exon-scaffold_189-1575043694:367576..367641TCONS_00050831-exon-scaffold_189-1575043694:367576..367641Clytia hemisphaericaexon
TCONS_00050831-exon-scaffold_189-1575043694:366588..366642TCONS_00050831-exon-scaffold_189-1575043694:366588..366642Clytia hemisphaericaexon
TCONS_00050831-exon-scaffold_189-1575043694:357909..361863TCONS_00050831-exon-scaffold_189-1575043694:357909..361863Clytia hemisphaericaexon
TCONS_00050831-exon-scaffold_189-1510915933:368143..368194TCONS_00050831-exon-scaffold_189-1510915933:368143..368194Clytia hemisphaericaexon
TCONS_00050831-exon-scaffold_189-1510915933:367576..367641TCONS_00050831-exon-scaffold_189-1510915933:367576..367641Clytia hemisphaericaexon
TCONS_00050831-exon-scaffold_189-1510915933:366588..366642TCONS_00050831-exon-scaffold_189-1510915933:366588..366642Clytia hemisphaericaexon
TCONS_00050831-exon-scaffold_189-1510915933:357909..361863TCONS_00050831-exon-scaffold_189-1510915933:357909..361863Clytia hemisphaericaexon
TCONS_00050831-exon-scaffold_189-1491911889:368143..368194TCONS_00050831-exon-scaffold_189-1491911889:368143..368194Clytia hemisphaericaexon
TCONS_00050831-exon-scaffold_189-1491911889:367576..367641TCONS_00050831-exon-scaffold_189-1491911889:367576..367641Clytia hemisphaericaexon
TCONS_00050831-exon-scaffold_189-1491911889:366588..366642TCONS_00050831-exon-scaffold_189-1491911889:366588..366642Clytia hemisphaericaexon
TCONS_00050831-exon-scaffold_189-1491911889:357909..361863TCONS_00050831-exon-scaffold_189-1491911889:357909..361863Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050831-proteinTCONS_00050831-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:357909..368194 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.5804	16.974	18.7608	20.7715	91.261	69.8049	44.9591	47.8596	35.7795	40.6116	26.9606	27.3265	25.6354	25.3886	25.2436	27.6886	37.7793	35.2752	22.817	26.1065	28.3165	29.4247	21.6033	24.4474	31.3108	31.1643	21.0294	19.4999	20.4383	19.9852
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011993PH_dom-like
IPR032403Exo84_C
IPR016159Cullin_repeat-like_dom
Blast
[Close]
BLAST of TCONS_00050831 vs. Swiss-Prot (Human)
Match: EXOC8 (Exocyst complex component 8 OS=Homo sapiens GN=EXOC8 PE=1 SV=2)

HSP 1 Score: 353.599 bits (906), Expect = 3.043e-105
Identity = 243/726 (33.47%), Postives = 370/726 (50.96%), Query Frame = 3 
Query:  345 MKLDEVSSPVLAKKFSAPDFNPEDYVKTILSKCDIYRTLFDQRNNIQKLGEETAVSLKKNVYRNYKQFIDTAKEISYLEAEMYQLSHLLTEQKSILA-------------------------------DQL--ETDIFERPKGLPV-ALDPEVEAYENKKKSFLESIKVSKQLMDELESKELILEDHLTEYDPETYSSIQKVGAHLVTDNLMITN--EPKTGKADILTMFDLCDLAVVNVRDGQGVKNAFKILYSLETRMFGASTKDMKLSWLDQIERAKRNYKKGVQMDADKLAEMRXXXXXXXXXXXXHKKXXXXXXXXXXXXXXXXXXDQSFRYPNLLNVDWLVELPEDLDMCIAQRDFEGAVQLVERGRTYLADFQESPPLKEIRDKIESRVEQLVTVLEKXXXXXXXXXXXXXXXIRVYVLLLIRLGRGKLACELFLRNRGFEIKNSFKQLKMEGATAIYVRKLASVFFTSVIETGREYKRNFT-LNSNC-SAFVVWLHNELQNFAEKFTRQVFTRNTNLQNVGLCISLALTQCQRLNSIGIDLTFDLQHMFLKEVMTAVFDARDQIMERAKSKAMDDNWVPMTLATDE-LDTLVGEIDSLNLQGFQPYVKGNV-IHLSTSTINFTKSFLVFMVDVLGKFYTTEIHDTLTQCVREIFKAQSIQFESLIRDPNLKDRRQFIYVNAEFIFGKVFKKASDQMKELTGHELASLQPVNNMMERLR 2402
            M + +  +  L ++  +  F    YVK +  + D  R L + R  IQ L EETA +LK+NVY+NY+QFI+TA+EISYLE+EMYQLSHLLTEQKS L                                D L  +   F  P G       P  E  +    + LE ++  + L+ E   + L+    L EYD +  + +Q+V   L+ D L++      + G      ++ L  LAVVNV+D   +K+ FK+L   E+R+F A    +K  WL+ +E  KR   +  + + ++ A  R   Q  S      + +EE        E+E             L+++W+ ELPEDLD+CIAQRDFEGAV L+++   YL D    PP+KE+R K+E RV QL  VL     +   S     ++ R  V  LIRLG+   ACELFLRNR   +  + +QL++EGAT +Y+ KL  VFFTS++ET RE++ +F   +S C SAFVVW  + +  F + F++QVF    +L     C+ +A   CQ+L  IG+DLTF +  + +K++  A+   ++ I+E  K +  ++ W  M L T E L  L  E+ S  +  F+ Y   +  ++LS + + FTK  + F+ + L K Y  E+H  L + + EI        +  +R     +++ FI  NA F++  V      + +E  G     LQ + N    +R
Sbjct:    3 MAMSDSGASRLRRQLESGGFEARLYVKQLSQQSDGDRDLQEHRQRIQALAEETAQNLKRNVYQNYRQFIETAREISYLESEMYQLSHLLTEQKSSLESIPLTLLPAAAAAGAAAASGGEEGVGGAGGRDHLRGQAGFFSTPGGASRDGSGPGEEGKQRTLTTLLEKVEGCRHLL-ETPGQYLVYNGDLVEYDADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYSLDGLAVVNVKDNPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEDTKRALSEKRRREQEEAAAPRGPPQVTSKATNPFEDDEEEEPAVPEVEEEKVD----------LSMEWIQELPEDLDVCIAQRDFEGAVDLLDKLNHYLEDKPSPPPVKELRAKVEERVRQLTEVL-VFELSPDRSLRGGPKATRRAVSQLIRLGQCTKACELFLRNRAAAVHTAIRQLRIEGATLLYIHKLCHVFFTSLLETAREFEIDFAGTDSGCYSAFVVWARSAMGMFVDAFSKQVFDSKESLSTAAECVKVAKEHCQQLGDIGLDLTFIIHALLVKDIQGALHSYKEIIIEATKHRNSEEMWRRMNLMTPEALGKLKEEMKSCGVSNFEQYTGDDCWVNLSYTVVAFTKQTMGFLEEAL-KLYFPELHMVLLESLVEIILVAVQHVDYSLRCEQDPEKKAFIRQNASFLYETVLPVVEKRFEEGVGKPAKQLQDLRNASRLIR 715
The following BLAST results are available for this feature:
BLAST of TCONS_00050831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXOC83.043e-10533.47Exocyst complex component 8 OS=Homo sapiens GN=EXO... [more]
back to top