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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050859 ID=TCONS_00050859|Name=TCONS_00050859|organism=Clytia hemisphaerica|type=transcript|length=1151bp
tagattttttattttaacatgtgacatttgttttgattttgtatctgctg
catacagtttgtttacaaatttcgcaagtactgttatgtccctttaatgt
aATTGGTAAAACATGAAGTTGTAAGATCCGAACAAATGGATGCCTGAATA
AATTTGTAAGCAAAAATTGGTGCAAATTATATTTCTTGAATGTTTTCTTA
TAGTATTTCGTAGGTATTTCGAAAAACAATttataaaagttgaaaattgg
aTAAGAAAAAGCAAAGCATTTTCCTAGAGATCATAATTTTGTTGAGTGGC
TAATGAATTGGGCAAttcctggatttttttctcctttttgaaCCACCCTG
GTTTTTCaacctcgttttactgaccaccctggaatCTAAACCTCATTTCA
CTGACCCCTCCACCATATTTCACTGACCTAaatttttacactcgaaaaac
cagATTTCCttcgattttttgttttgcagaCCACTcaggacgtcacacct
cctcaacatagggggtacagactttTTCTAGAACAGTCTGTTTAAAGATT
GATTTAAAATCCAATTAACATCAATTGCATTATGTCTCAGCTGAGCATAT
AGGTAAAATAACCCATTCCTAAGGCTATAATTCTTAATCAAGTAGAAATT
TGgataatatattttaaaataaaagttttagcTAGTCACTTTTATATATT
ATTTATGGGGTTGTAACACAGAGGACCCAACAGGTGTCTCAAGAGGTATA
CTACCCCGAAGACTGCTGGAGAGACGATGGAATTGTACCTCCCAGGACCC
CGCCCGGACTCTTAGACATTTGAAGATGATAGAAGCATCAGTAATAAGTT
TTTCATAGTGATGTTCTAAAGAATAATTGTTGTAAAAATTATAATCATAG
CACAATACTTCacgaagttgatttttttcttcttcattttcatctccATT
TCAtttaccaatttcaaaaatgtttttctatttgATTATATAAAAGAAAT
AGTTCAATATTTACCGTGGACCATATCtgccatttttcaaaatgtgtcTC
ACTTTTTGTGAAGAAAGGTGTAAAGActcaaaagctcaaattttgtttca
tttctacTACAAAAAGGTGTTATTTTAAGgaaagcaaaaattttgttaca
c Run BLAST on NCBI transcript from alignment at scaffold_189:292182..293332 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050859 ID=TCONS_00050859|Name=TCONS_00050859|organism=Clytia hemisphaerica|type=transcript|length=1151bp|location=Sequence derived from alignment at scaffold_189:292182..293332 (Clytia hemisphaerica)
gtgtaacaaaatttttgctttcCTTAAAATAACACCTTTTTGTAgtagaa
atgaaacaaaatttgagcttttgagTCTTTACACCTTTCTTCACAAAAAG
TGAgacacattttgaaaaatggcaGATATGGTCCACGGTAAATATTGAAC
TATTTCTTTTATATAATcaaatagaaaaacatttttgaaattggtaaaTG
AAATggagatgaaaatgaagaagaaaaaaatcaacttcgtGAAGTATTGT
GCTATGATTATAATTTTTACAACAATTATTCTTTAGAACATCACTATGAA
AAACTTATTACTGATGCTTCTATCATCTTCAAATGTCTAAGAGTCCGGGC
GGGGTCCTGGGAGGTACAATTCCATCGTCTCTCCAGCAGTCTTCGGGGTA
GTATACCTCTTGAGACACCTGTTGGGTCCTCTGTGTTACAACCCCATAAA
TAATATATAAAAGTGACTAgctaaaacttttattttaaaatatattatcC
AAATTTCTACTTGATTAAGAATTATAGCCTTAGGAATGGGTTATTTTACC
TATATGCTCAGCTGAGACATAATGCAATTGATGTTAATTGGATTTTAAAT
CAATCTTTAAACAGACTGTTCTAGAAaaagtctgtaccccctatgttgag
gaggtgtgacgtcctgAGTGGtctgcaaaacaaaaaatcgaaGGAAATct
ggtttttcgagtgtaaaaattTAGGTCAGTGAAATATGGTGGAGGGGTCA
GTGAAATGAGGTTTAGattccagggtggtcagtaaaacgaggttGAAAAA
CCAGGGTGGttcaaaaaggagaaaaaaatccaggaaTTGCCCAATTCATT
AGCCACTCAACAAAATTATGATCTCTAGGAAAATGCTTTGCTTTTTCTTA
tccaattttcaacttttataaATTGTTTTTCGAAATACCTACGAAATACT
ATAAGAAAACATTCAAGAAATATAATTTGCACCAATTTTTGCTTACAAAT
TTATTCAGGCATCCATTTGTTCGGATCTTACAACTTCATGTTTTACCAAT
tacattaaagggacataacagtacttgcgaaatttgtaaacaaactgtat
gcagcagatacaaaatcaaaacaaatgtcacatgttaaaataaaaaatct
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050859-exon-scaffold_189-1491911889:292182..293332 | TCONS_00050859-exon-scaffold_189-1491911889:292182..293332 | Clytia hemisphaerica | exon |
| TCONS_00050859-exon-scaffold_189-1510915933:292182..293332 | TCONS_00050859-exon-scaffold_189-1510915933:292182..293332 | Clytia hemisphaerica | exon |
| TCONS_00050859-exon-scaffold_189-1575043694:292182..293332 | TCONS_00050859-exon-scaffold_189-1575043694:292182..293332 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:292182..293332 . |
Blast
The following BLAST results are available for this feature:
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