TCONS_00051023 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051023
Unique NameTCONS_00051023
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1148

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051023 ID=TCONS_00051023|Name=TCONS_00051023|organism=Clytia hemisphaerica|type=transcript|length=1148bp
GCATGTTCAAAACAACACGTCCGAAGCTTCGAAACCCAGGTCGATACATT
TGCTGTCTTCCTCTACACACCCCCAGTTGAAATTCAGTTTGTAATTGAAA
ACGAAACAGAAAAGTCACATTTGAAAATGGCATCTACTGAACCACTTAGA
GTTTGTGTCACAGGAGCAGCTGGTCAAATTGCTTACTCCCTCTTATATAG
CATCGGTAATGGAGATGTCTTTGGTAAATCTCAGCCAATTACCTTACTCT
TATTGGATATCCCACCAATGATGCCAGTCTTGGAAGGAGTTGTAATGGAA
TTACAAGATTGCTCTCTTCCCTTACTTCATGAAGTCGTTGGAACTGCTGA
TCCAAATGTCTCATTCAATAATGTTGATGCTGCCATCTTGGTTGGTGCTA
TGCCAAGAAGAGAAGGAATGGAAAGGAAAGATCTTTTGAAAGCTAATGCT
AAAATCTTTGAAGACCAAGGAAAGGCTCTTGATCAATACGCAAAGAAGAC
GGTCAAGattttggTTGTAGGAAACCCAGCAAACACTAACTGTCTGATCG
CTTCCAAATGTGCACCAAGTATTCCAAAAGAAAATTTCTCATGTCTCACA
AAATTAGATCAAAACAGAGCTATTTCACAGGTTGCAATGAGACTCGGTAT
CAAAACATGTGACGTCAGCAAGGTTATCATTTGGGGAAACCACTCATCCA
CACAATACCCTGATGTTCAACACGGGTTCGTCAATCTGAACGGTCAAGCA
GTCCCAATTACTGAGGCTGTTAAAGATGATAATTGGATTCAAGGAGAATT
CTTAAGGACTGTTCAAACGCGTGGTGCGGCCATCATAAAAGCGAGAAAAT
TATCAAGTGCCATGTCCGCTGCGAAAGCCATTTGTGACCACATGCGCGTT
TGGTGGTTCGGAACCGCCGAAGGTGAATACATGAGCATGGGTGTTATCAC
TGACGGCACACATTACGGAATCCCTGAAGATATCGTTTATTCTTTCCCAC
TGACGATCGGTGCGGGCCACAAATACACAATCGTCGATGGTTTAGAAATC
AATGCCTTCTCTCGGCAAAAGATGGATCTCTCAGCTAAGGAATTAGTGGA
GGAAAGAGATGTCGCGTTAGCGTTCTTGAAAAAGGAATGAGTTAAANA
Run BLAST on NCBI

transcript from alignment at scaffold_192:49010..54587-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051023 ID=TCONS_00051023|Name=TCONS_00051023|organism=Clytia hemisphaerica|type=transcript|length=5578bp|location=Sequence derived from alignment at scaffold_192:49010..54587- (Clytia hemisphaerica)
GCATGTTCAAAACAACACGTCCGAAGCTTCGAAACCCAGGTCGATACATT
TGCTGTCTTCCTCTACACACCCCCAGTTGAAATTCAGTTTGTAATTGAAA
ACGAAACAGAAAAGTCACATTTGAAAATGGTAAGATTCTTTTTATTTTCG
TTTGATTTTTCTTGATAAAAAACTGGACAGTTTGCGTTTACAACCCACGA
TATGGCCAGAAAATAACTCAAACAATTTTGGTTTTTGTTTGGGCCAACAG
CAAAACATTCTTTTGGTCCAAATATTGATGTTTTATGTCCAAGTTTGGGT
CACAAAAAGTTTTATTTTTAACTCCAAAAGCCCAGCCCAAACACGTCTCA
ACACGAATATACACAGACCAGTTCAGACCATAAAATATGACCCATATAAA
CACGCACACAAAACTTTTGAAATTTTCGCCTCTGAATGAAAAACTACTAA
CTTAACCAGGCTGGGTTCAGGACTTTTTCAAGTTCAAAATCCCCAAGGGG
TTGTGGTTGTGGGAATCATATGACGTTTTGCTTTTCTGCTTCTTTTGCAC
CTTCATCTTCCCATTGGGCTATTCCATTTTTAAACCATACAGGGGTATTG
ACGAACTTTTCCAGGNATGTAATGGTCTTTTGAAGTGCTTGTTCTAAGAG
ATGAGTGAATATAATTGTTTTTAGTTTTCAAGAGAAGCAAATTTAATCTT
TTTTCTACAAGATTAACTTTAATATAACGCAAATTATGCATGCAAGTTTT
TATTTAATACTTTCTTTTTGCATATGTTTTGCATACTTTCTAAGGGAATT
TCACCACAGCAATTCGGCCACCATAATTTTTGCATACAATTCANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTTCATTGGAAAGTCTATCAGTCAT
TTTCTTCTGTCTTCTTTTGAAAGAGTATTGAAAATCGACAAAGCAAAAGC
TGAGCTGATTGCTCACCAAAAGTTTTGCTGTGTGGAGACCATGTATAAAC
AAAGATCATGGAAACTGTTCGGTAAAATATTTGCTTTTCGTTCTGCAAAT
TACCGCTCTGGATCTAGCCTCAGTGATCTAATTTTTTATTTGATACTGTA
GGAAATATTGCTGGATATTTTGCTTTTGATAACAAATTAAAGGTTTAAAA
TGCTTTGCTTTTTAAAAAACTTTCGAAATTCTTCAAATCTTTTATATTTT
CCACTACCACGAATTTCAAATTCTTTTATTTGGAGAATAGGCTAAATCAA
TGATCATGCGCTGTGACGTCATAGTTCACGTGCTCCATGACAAAGTGCAT
GCGTGCATGTTCAAAACAACACGTCCGAAGCTTCGAAACCCAGGTCGATA
CATTTGCTGTCTTCCTCTACACACCCCCAGTTGAAATTCAGTTTGTAATT
GAAAACGAAACAGAAAAGTCACATTTGAAAATGGTAAGATTCTTTTTATT
TTCGTTTGATTTTTCTTGATAAAAAACTGGACAGTTTGCGTTTACAACCC
ACGATATGGCCAGAAAATAACTCAAACAATTTTGGTTTTTGTTTGGGCCA
ACAGCAAAACATTCTTTTGGTCCAAATATTGATGTTTTATGTCCAAGTTT
GGGTCACAAAAAGTTTTATTTTTAACTCCAAAAGCCCAGCCCAAACACGT
CTCAACACGAATATACACAGACCAGTTCAGACCATAAAATATGACCCATA
TAAACACGCACACAAAACTTTTGAAATTTTCGCCTCTGAATGAAAAACTA
CTAACTTAACCAGGCTGGGTTCAGGACTTTTTCAAGTTCAAAATCCCCAA
GGGGTTGTGGTTGTGGGAATCATATGACGTTTTGCTTTTCTGCTTCTTTT
GCACCTTCATCTTCCCATTGGGCTATTCCATTTTTAAACCATACAGGGGT
ATTGACGAACTTTTCCAGGGGGGTCTGAGCCTTGATTTTCCAGGGGGTTC
TCTCCTCCTAAACTGGCATCAATAGACCTTTTCGCCTTTCCGTCCGCCAT
CTTGAATTGTATGCAAAAATACAGGAACAAAAATGTCGTGGTTGGATTTA
GTTGAAATGTATGCAAAACATATGCAAGTTTACACAAAGATTAAAAAGAC
AACAAAGCATCTTATAAATAAATATTATAATCATTANGGCCGATGGCTTT
TTCCTTTTTCACAAAATTTCACTTTCCATCCAGGCGTGTCGACCTAATTT
TCCAGGGGATAGTTTGTTATCCAAAATTTCCAGGGGGGTTAGTGAAAAAA
GTTTGTCAATACCCCCTGTATAATTTTTTTTTGGAATAGCCCAATATTGT
ATTTGAATTTTCTGGATTTTTCAATTTTTGGTTTAAATTTTTTTAAACAA
TCAGCACTCAGGAAGGTCAAAGTTTGCCAGAGGACATGGTCCATCAGATG
ACATAGGTGTGTCGCCCTATTTGGTCAGAAAAATAAAAAATAAATATAAA
AACTCTTTAAAAAAGTTATTTTTAACTTCCTACGAATTTCCATTTTATTT
ATTACAAATTTGGCTTCGAAAACACTATTTGATATTCCCTGGAGCAGCAC
AAACTTGTTGAACTGAATTGGGTTATAAAACTGATCAAACACTCACGATT
TTTTACAAAATTTCAATTATTGATTTATTACTGTGAGATCGGGTAACTTG
CATCAGTGGAGGCTAACATGCATTGCCATCAAATGAGTGACCAATCAAAG
CAGCAAAATTTCAAAACAAATGAACTACACAGCTCCGCTCGCAATCTACT
CTACCATTTTTGTTTTGATTTAACTTTGTATTTTATTAAGTCATTCATTT
GAGGGCTATGCATGTTTGCCTCCAATGATGCAAGTTACCCGATCTCACGG
TAAATGTCAAGAGTTGGGTCAAGCTTGATTTAAAGATTAGTTCAATAAGT
TTGATTGATCGTGACTTCACTTTTTTTATAGGCAAAAGCTTGTTAATCCT
CGTTAATCCTGGGTCAGAGCAGGATTAATATTTGGCCAATTTAATCAGAA
TTTAATCCAGATTTAAGCCTATTTTTTTTCGAACAACTGACGATTCTGCA
TTAATCGGCGCTAACAGGCGCTAATCGAGATTTAATCGAAAATTAAGCTA
ATCGGCCGCTAATCCACTTTTGAACAACCGTGCCCTTGACAATAAAAATT
GAGTTTTGAATTCTTTTATATTTCAGGCATCTACTGAACCACTTAGAGTT
TGTGTCACAGGAGCAGCTGGTCAAATTGCTTACTCCCTCTTATATAGCAT
CGGTAATGGAGATGTCTTTGGTAAATCTCAGGTTGGTCTTATTGATTATT
TTGTTATAATAGAAAGTTTTAACATTTTAAATTGATGTTGATACTTCATA
TCAATCAAATAATCCTGTTCTAAGCAATGATCAGTCTACATCATTCTCCA
TACCCTCAAGAGAGTCAAAAAATATTGTGTCTGATATTTCCCTGTTCTCT
TTTTATTCTAGCCAATTACCTTACTCTTATTGGATATCCCACCAATGATG
CCAGTCTTGGAAGGAGTTGTAATGGAATTACAAGATTGCTCTCTTCCCTT
ACTTCATGGTAAGTTCAGCCATCGTTATCATCAAAAATTAAGAATTGTTT
TTATTTATTTACTAAACAGTTGGTTGACAAGTCTTTGGCATTCGATTTTT
TTTGTGAAATGGTTTGGTTTTTAATCTCTCTTCTCCTAATTAGAATTCTT
CAATTTTACTAAAATAACAAGAGAATTTTGAAGGAGAGTTTTTGGTATTT
ATCGTAATCTGTTTAATGTTTATTATTTGTAGAAGTCGTTGGAACTGCTG
ATCCAAATGTCTCATTCAATAATGTTGATGCTGCCATCTTGGTTGGTGCT
ATGCCAAGAAGAGAAGGAATGGAAAGGAAAGATCTTTTGAAAGCTAATGC
TAAAATCTTTGAAGACCAAGGAAAGGCTCTTGATCAATACGCAAAGAAGA
CGGTCAAGGTACATTTTTCTTTACTTCCTCTTCCCATGATAAATGTAAAC
AACATTGTGACAAATTGCACTTCTTGTTTGTTGGCCACAATATCCTTCCT
CTATTCTTGAACAACAAGATTCGAACTCCTCCCTAGTAATGCCCCTCTTC
AGCCCCTCTCAATCCCCGATCAAATTTCAATATTTTCTTAACTTTTTTTA
ATGGATATGTTGTAAAAGATTTTTTAGAATGTAACCGTCAATTCTTTTCA
TTTCATTTAAAAAATATTTTACCTGTAAGTTAATTAATTTAATGTTTCTT
ACTTTTTCTTTAGATTTTGGTTGTAGGAAACCCAGCAAACACTAACTGTC
TGATCGCTTCCAAATGTGCACCAAGTATTCCAAAAGAAAATTTCTCATGT
CTCACAAAATTAGATCAAAACAGAGCTATTTCACAGGTAATTTCGTTATC
TGGGTTCAAGATTTAGAAGATTATGAAATTTTATTAAAAGCATAATACGT
TAGACAGTTTTTGGGCCGTTCAAAACTTGCTTTATTAAATTTGTTTTGTT
ACAAAAAAGAAAAAGTATTCTTGCTCTAGAGAATCTATCATCTTAAATGT
CTAGAACTACAGGTCTACTGTTTCACCAGAAATAGACTTTATAGAACAAT
GTTTGATTTCAGGTTGCAATGAGACTCGGTATCAAAACATGTGACGTCAG
CAAGGTTATCATTTGGGGAAACCACTCATCCACACAATACCCTGATGTTC
AACACGGGTTCGTCAATCTGAACGGTCAAGCAGTCCCAATTACTGAGGCT
GTTAAAGATGATAATTGGATTCAAGGAGAATTCTTAAGGGTACATAAGCT
GTTCGTTCATATTTTATCTGTCCTCCTAAGACTGCCTAAGACACAATAGC
GAGTTTATGTATTCGAGATAAATCGAGGGGGCGGTACAAAGCAAAGTTGA
CATGGGGCCGAAATCACCGTCCACTTTGCTCGACGAGGTTAAAAACACCA
AGATACCGTCGTCTGTTAAGGTGAGCAAAAGCGATATAGAGCCGAACATC
AACAATCGACTTTGTTTTGTATCGATTTCAACTACCGTCGCCCTCGATAT
CCTCCGATACATAAACTCGGTAATAAAAGAAACAGAAACTTAATTCTCCA
CAATGTCATGATAGAGAAAGTTTATGCATGAAGAGAATTAAAGTGTGATA
TGAAATCCGATCCTCAAATCACATCTTTAAAAAAACATATTTCATATGAC
ACATTTAATAATCCTGCATAACTTCCTGTTTTTATAGACTGTTCAAACGC
GTGGTGCGGCCATCATAAAAGCGAGAAAATTATCAAGTGCCATGTCCGCT
GCGAAAGCCATTTGTGACCACATGCGCGTTTGGTGGTTCGGAACCGCCGA
AGGTGAATACATGAGCATGGGTGTTATCACTGACGGCACACATTACGGAA
TCCCTGAAGATATCGTTTATTCTTTCCCACTGACGATCGGTGCGGGCCAC
AAATACACAATCGTCGATGGTTTAGAAATCAATGCCTTCTCTCGGCAAAA
GATGGATCTCTCAGCTAAGGAATTAGTGGAGGAAAGAGATGTCGCGTTAG
CGTTCTTGAAAAAGGAATGAGTTAAANA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032340XLOC_032340Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051023-exon-scaffold_192-1575043694:54459..54587TCONS_00051023-exon-scaffold_192-1575043694:54459..54587Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1575043694:51307..51411TCONS_00051023-exon-scaffold_192-1575043694:51307..51411Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1575043694:51030..51126TCONS_00051023-exon-scaffold_192-1575043694:51030..51126Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1575043694:50630..50805TCONS_00051023-exon-scaffold_192-1575043694:50630..50805Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1575043694:50202..50324TCONS_00051023-exon-scaffold_192-1575043694:50202..50324Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1575043694:49799..49975TCONS_00051023-exon-scaffold_192-1575043694:49799..49975Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1575043694:49010..49350TCONS_00051023-exon-scaffold_192-1575043694:49010..49350Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1510915933:54459..54587TCONS_00051023-exon-scaffold_192-1510915933:54459..54587Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1510915933:51307..51411TCONS_00051023-exon-scaffold_192-1510915933:51307..51411Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1510915933:51030..51126TCONS_00051023-exon-scaffold_192-1510915933:51030..51126Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1510915933:50630..50805TCONS_00051023-exon-scaffold_192-1510915933:50630..50805Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1510915933:50202..50324TCONS_00051023-exon-scaffold_192-1510915933:50202..50324Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1510915933:49799..49975TCONS_00051023-exon-scaffold_192-1510915933:49799..49975Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1510915933:49010..49350TCONS_00051023-exon-scaffold_192-1510915933:49010..49350Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1491911889:54459..54587TCONS_00051023-exon-scaffold_192-1491911889:54459..54587Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1491911889:51307..51411TCONS_00051023-exon-scaffold_192-1491911889:51307..51411Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1491911889:51030..51126TCONS_00051023-exon-scaffold_192-1491911889:51030..51126Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1491911889:50630..50805TCONS_00051023-exon-scaffold_192-1491911889:50630..50805Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1491911889:50202..50324TCONS_00051023-exon-scaffold_192-1491911889:50202..50324Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1491911889:49799..49975TCONS_00051023-exon-scaffold_192-1491911889:49799..49975Clytia hemisphaericaexon
TCONS_00051023-exon-scaffold_192-1491911889:49010..49350TCONS_00051023-exon-scaffold_192-1491911889:49010..49350Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_192supercontigscaffold_192:49010..54587 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
190.546	203.078	110.532	30.5416	0.0200875	0.000574347	7.4722	1.853e-05	144.23	185.819	132.492	110.997	75.0995	86.8654	156.929	155.661	180.81	197.753	50.0502	53.3022	83.2834	53.959	167.394	165.313	6.00919e-07	1.61926e-08	81.9199	102.552	83.1029	96.4546
Blast
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BLAST of TCONS_00051023 vs. Swiss-Prot (Human)
Match: MDHC (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 493.041 bits (1268), Expect = 3.790e-174
Identity = 230/331 (69.49%), Postives = 277/331 (83.69%), Query Frame = 1 
Query:  136 TEPLRVCVTGAAGQIAYSLLYSIGNGDVFGKSQPITLLLLDIPPMMPVLEGVVMELQDCSLPLLHEVVGTADPNVSFNNVDAAILVGAMPRREGMERKDLLKANAKIFEDQGKALDQYAKKTVKILVVGNPANTNCLIASKCAPSIPKENFSCLTKLDQNRAISQVAMRLGIKTCDVSKVIIWGNHSSTQYPDVQHGFVNLNGQAVPITEAVKDDNWIQGEFLRTVQTRGAAIIKARKLSSAMSAAKAICDHMRVWWFGTAEGEYMSMGVITDGTHYGIPEDIVYSFPLTIGAGHKYTIVDGLEINAFSRQKMDLSAKELVEERDVALAFL 1128
            +EP+RV VTGAAGQIAYSLLYSIGNG VFGK QPI L+LLDI PMM VL+GV+MELQDC+LPLL +V+ T   +V+F ++D AILVG+MPRREGMERKDLLKAN KIF+ QG ALD+YAKK+VK++VVGNPANTNCL ASK APSIPKENFSCLT+LD NRA +Q+A++LG+   DV  VIIWGNHSSTQYPDV H  V L G+ V + EA+KDD+W++GEF+ TVQ RGAA+IKARKLSSAMSAAKAICDH+R  WFGT EGE++SMGVI+DG  YG+P+D++YSFP+ I     +  V+GL IN FSR+KMDL+AKEL EE++ A  FL
Sbjct:    2 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVI-KNKTWKFVEGLPINDFSREKMDLTAKELTEEKESAFEFL 331
The following BLAST results are available for this feature:
BLAST of TCONS_00051023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MDHC3.790e-17469.49Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]
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