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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051028 ID=TCONS_00051028|Name=TCONS_00051028|organism=Clytia hemisphaerica|type=transcript|length=2490bp
ttcaggtaATAAAAGatgataataataaaaaagacaataaaTCTTACATA
AATTTTGGTTACACATTTTATTAACATGGAGAATGGATTTTCATCAATCA
GAAATAATCCCAGTGGTGGTGCTATTCCCAAAACTGGGAAAAGTAAATTC
TACACAACGGAACTAAGTTTTGAGGATAACTTTGATCCATCTAATTATAT
TCAAAAGAACACTCAACATCCAACAATAAAAGAAGATGATTCTTTTACCA
AGCCGGCGAACCCAGAacctgaaaaacaaaaagaaactaTCAATGACATT
TCAAGTCATAAAGTTAAACAGTCAGGAAGTCCTCTCATGTGCTATGTTGT
AAGACTTAAACATGGTGATGAGCTAAGAAAGTCTTTGTTATCCTTTGTCA
AAAAGAATGGACTAAAAGCAGCTTTTATTATGTCTTGTGTGGGTAGTTGC
ACATCAGCACGTGTACGCTTGGCGAGTGCTACCCCAGAAAATGAAGCCAA
TTATATGCTAGATTTGATCAATCCGATGGAAATTGTTTCATTAGATGGGA
CATTATCAGGGGGTGGTCACCTTCATGTTGGACTAGCAGATTATAGCGGT
AAAATGATGGGTGGCCACCTGCTGGAGTTGGTTGTTGACACCACAGCTGA
GGTAGTGATAGGAGATTGTAGTTCATTGTCATTTACCAGAACTTATGATC
AATCCACCGGTTTCCATGAGTTACAGGTTTCTGATAGATAAATGCTGGCT
TGTTTCATTGCCATTTACCTAACCAATGATCAAACCGCTGAGTTCAATGA
GTTAACAAGTTTCTGATAGATTATTACTTGTTTGTTTCATTGTCATTTAC
CATAACATATGATCAAACCACTGGTTTCCATGAGTTACAAGTTTCTGATC
AATTattgttgattttttgtatggtgTGTGGTGTAGTGAAAACATTTTCT
GAGAATTCATTCATAACCGGCACTTGATTACTTTTGTTTGCAATCGTCAA
GATGTTGATTTCACCATATTGATCGATActacattttcattttgaactaC
TGATGTTGTGCGTATTCAAAATGCAATTTTGcagactcgtctGCAAAAAG
CAGGATATTTGAATGCAAAGAAATTCTCATAATTCGTGTGCAAATCTTTT
GACCTAATTATActttatttcttctttcaaaaacattttttgtcttACTG
ATTGCTAGTGATTTAACAATGAATCACCATCCTGCACCATCCTTATTTTG
AAATCTAGTATGGTGAATGATTTCAAGGATATTCCTTTCATTGCAGTGAT
TTTGTcgtatattttttctttggattgtTTTAGCTAGTTTTTGGATCTGT
ATAGCTTTTCAATGTTCTGGCTGAATTAATCCTAACTAAACATCCTAACG
GCCTTCATTGCTAAATACTTAATCATCTGAAACATTTTACAGGTTTTGTT
GATGGTTTATCTATTGTATGAtgtctttgtatttttgtatatttacagTA
TTATTCATAATGCAATCACACAAATTATTGATAAACGCTGTGACATTGAC
ATCTCATAAATTTCTgaaactaaaaatgaagattctttagaaattctttt
tcattttaaagacaTGAGCCATGTTAGTTTGTTCAGCAATATAAATCTTG
CCAGCTATTGGGGGAaaaccgtaacttggtctaatgtcaacattcGCAAT
CGAATCGAGAtagaaataacaaaaaaagacGGAGAATCAATCAATAGTGA
TAAGGGTGACGAAATTAGATGTGGGATGTCGGCATTAGACGTTACAGTGT
TTTCGATAAAGTGGGGTTAAAGTAGTGCCATTAGTTTCATAGTCAGCAGG
ACTAGGCAACTctaattttcaacttttgagaTATTAGAATGACAATAATT
TCCATTCTCaaccttttcaaatttaaatagTGTATATTTTTGTGACTTCA
TTCATATTATATAGAaattttgtattattttttgtaaaatcttcgTGACA
GAGTTTGAAATCATTTATTTTAAAACAGATTGTATCAAAGTTTATTTAGA
TTGTTAGCATTTAAAAAAGGGGTTTTTTGAGGTGATATAACttgtataaa
gttttttttctccggacttttttgtttgtttgattttattggTACATTAC
CACAATGTAATCTTTATCGAGTTTCGTCTGGTCCTATTTTTAAAATAGTC
AATCGTACCTAATGCCATGCTTTATTTTTTGGAATTAAGTATTGGTAATC
GTCTAAAATCGGTCTAGATTTATTAAAATTCATGAATTGGTAGCATGAGA
CTGGCACCATgttgaaaaacatgaaattttacgatttttagttaaatttt
tcttttattttaaacgATATTTCTATTCATAGTATCACTTACTACTATTT
ATGCAGAgcatttttgtttacattttaattcttttgagATTCATTTTATA
AACACAGTTTTTATGCCTTGGAAATCTTATTTGTTAAATA Run BLAST on NCBI protein sequence of TCONS_00051028-protein >TCONS_00051028-protein ID=TCONS_00051028-protein|Name=TCONS_00051028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MENGFSSIRNNPSGGAIPKTGKSKFYTTELSFEDNFDPSNYIQKNTQHPT
IKEDDSFTKPANPEPEKQKETINDISSHKVKQSGSPLMCYVVRLKHGDEL
RKSLLSFVKKNGLKAAFIMSCVGSCTSARVRLASATPENEANYMLDLINP
MEIVSLDGTLSGGGHLHVGLADYSGKMMGGHLLELVVDTTAEVVIGDCSS
LSFTRTYDQSTGFHELQVSDR Run BLAST on NCBI transcript from alignment at scaffold_192:87441..92050- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051028 ID=TCONS_00051028|Name=TCONS_00051028|organism=Clytia hemisphaerica|type=transcript|length=4610bp|location=Sequence derived from alignment at scaffold_192:87441..92050- (Clytia hemisphaerica)
TTCAGGTAATAAAAGATGATAATAATAAAAAAGACAATAAATCTTACATA
AATTTTGGTTACACATTTTATTAACATGGAGAATGGATTTTCATCAATCA
GAAATAATCCCAGTGGTGGTGCTATTCCCAAAACTGGGAAAAGTAAATTC
TACACAACGGAACTAAGTTTTGAGGATAACTTTGATCCATCTAATTATAT
TCAAAAGAACACTCAACATCCAACAATAAAAGAAGATGATTCTTTTACCA
AGCCGGCGAACCCAGAACCTGAAAAACAAAAAGAAACTATCAATGACATT
TCAAGTCATAAAGTTAAACAGTCAGGAAGTCCTCTCATGTGCTATGTTGT
AAGACTTAAACATGGTGATGAGCTAAGAAAGTCTTTGTTATCCTTTGTCA
AAAAGAATGGACTAAAAGCAGCTTTTATTATGTCTTGTGTGGGTAGTTGC
ACATCAGCACGTGTACGCTTGGCGAGTGCTACCCCAGAAAATGAAGCCAA
TTATGTAAGTTTTTTTGCTTTTGACTCTGATAACATTCTTGCACTTATTG
TGTTATTTTTCCATCCCCAGCCAGACCATATTTTAGAAAGGTTGTCAAAA
AGGCACTTTTTTAGTGTTTTTCCACTAAAAAGGCTGTTTTTACCAAAATT
TTAGCGATTTCAGGAGGGGCAGCTAAAAGGGCATAAAAATGGCCTGCCCA
CTGAATTCTCTGACTAGGAAACAATGGAATTCGAATCCCCAGCCATAAGA
AAACATGGGAGTATCAATCCCCACCGAGTTTTGGTCTGCTATTTGAAGGG
GGTGCCTTTAAGAAACCATTTATCTCAATGTAATCTCATTTCTTTTCAGA
TGCTAGATTTGATCAATCCGATGGAAATTGTTTCATTAGATGGGACATTA
TCAGGGGGTGGTCACCTTCATGTTGGACTAGCAGATTATAGCGGTAAAAT
GATGGGTGGCCACCTGCTGGAGTTGGTTGTTGACACCACAGCTGAGGTAG
TGATAGGAGATTGTAGTTCATTGTCATTTACCAGAACTTATGATCAATCC
ACCGGTTTCCATGAGTTACAGGTTTCTGATAGATAAATGCTGGCTTGTTT
CATTGCCATTTACCTAACCAATGATCAAACCGCTGAGTTCAATGAGTTAA
CAAGTTTCTGATAGATTATTACTTGTTTGTTTCATTGTCATTTACCATAA
CATATGATCAAACCACTGGTTTCCATGAGTTACAAGTTTCTGATCAATTA
TTGTTGATTTTTTGTATGGTGTGTGGTGTAGTGAAAACATTTTCTGAGAA
TTCATTCATAACCGGCACTTGATTACTTTTGTTTGCAATCGTCAAGATGT
TGATTTCACCATATTGATCGATACTACATTTTCATTTTGAACTACTGATG
TTGTGCGTATTCAAAATGCAATTTTGGCTTTAGACAGAATGTGAACATAC
AGCATGTCTGCAAAGAGTCTGCTAAATTGCGTGGGTTGCGTGGGTGCGTG
GGTCAATATTTTTGCGTGGGTCAATATTCTTGCGTGGGTCATTTTTTTGC
GTGGGTGCGTGGGTCAAAATATTTTTTGCGTGGGTCAAAAATTTTGCGTG
GGTCAAATTTTTTGCGTGGGTCATATTTTTTGCGGGGGTCATTATTTTTT
GCGTGGGTCAAAAATTTTGCGTGGGTCAAATTTTTTGCGTGGGTCAAAGT
TTTTGCGTGGGTCACTATTTTTTTGGTCATTTTTTAGCTAACTCGATTTT
TTTACCAAATTAAAACTTTCAAGTTATCTTATACAAAAATGTATTGTGTA
TCTATGAAAACTAAACAAAAGCACACTGTTTTTATGTAACGCGTTGTGGT
TTATTTTGCATAGCTGCACTTATTTACTATAATATTATACAGAATCAACA
CACACCCGTCTAATTTTTGTAGANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAATTTTTGT
AGACACACTTCAGGATCACACTTTTGAATTTTAGCATGCTATATTTCAGG
ATTCCAGTGTCATGGAAATAAACCCTATAACTCTAAGCAAAAAAAACGAG
ATATAATAAAATAATAAAAAGTACAGCATCTTTATTTCGTCCAATTTTTT
AAATTGGCCTTTAATGTACTTAAATCAAAGAAATTACAAGTGGGGTGGAC
GAAATAATTGACAACAATTAAATTGTTTAGTAATCGGTCGCCTAATGAAT
ATAACTTTTGTAGAAAAATTTTCAGATTTTGTCGCAATTTGCTTTGTTCT
TTAACACTCAAAGAAAACCCAAAAGATTAAAGCGTGCTATAAGAAGCTAT
AAAAGCTGACATGTTCAGTCAGCGGAATTAAAAAATATAAAGCCGCTTGA
CTGTGTACATTTTTTTGGCCATATTCTTAGGTATATACAAAACGTAACTA
CAGTATTAATTTTGGACGAAATCTCCCAAAAGGGAAAATTCCACTTATAA
AAAGACACTCCCCTGTTGGAAACATTCTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACCATAT
TCAGAAAGTACGGAACTGTACAGCTATGCAAAATAAACAAAATAAACCAA
AACGTGTTATGTAAAACACATCCAACATTTTGGATGTGACCAGCTCGAAT
TTTCTTTTTTTCGAATTACAGATAGAATTTTGACCCACGCAAAAATTTTG
ACCCATGCAAAAAATAATGACCCACGCAAAAAATAATGACCCACGCAAAA
AATAATGACCCACGCAAAAAATAATGACCCACGCAAAAAATAATGACCCA
CGCAAAAAATAATGACCCACGCAAAAAATATGACCCACGCAAAAAATATG
ACCCACGCAAAAAATTTGACCCACGCAAAAAATATGACCCACGCAAAAAA
TTTGACCCACGCAAAAAATATTTTGACCCACGCACCCACGCAAAAAAATG
ACCCACGCAAAAATATTGACCCACGCACCCACGCAAAAAAATGACCCACG
CAAAAATATTGACCCACGCACCCACGCACCCACGCAACCCACGCAATTTA
GCAGACTCGTCTGCAAAAAGCAGGATATTTGAATGCAAAGAAATTCTCAT
AATTCGTGTGCAAATCTTTTGACCTAATTATACTTTATTTCTTCTTTCAA
AAACATTTTTTGTCTTACTGATTGCTAGTGATTTAACAATGAATCACCAT
CCTGCACCATCCTTATTTTGAAATCTAGTATGGTGAATGATTTCAAGGAT
ATTCCTTTCATTGCAGTGATTTTGTCGTATATTTTTTCTTTGGATTGTTT
TAGCTAGTTTTTGGATCTGTATAGCTTTTCAATGTTCTGGCTGAATTAAT
CCTAACTAAACATCCTAACGGCCTTCATTGCTAAATACTTAATCATCTGA
AACATTTTACAGGTTTTGTTGATGGTTTATCTATTGTATGATGTCTTTGT
ATTTTTGTATATTTACAGTATTATTCATAATGCAATCACACAAATTATTG
ATAAACGCTGTGACATTGACATCTCATAAATTTCTGAAACTAAAAATGAA
GATTCTTTAGAAATTCTTTTTCATTTTAAAGACATGAGCCATGTTAGTTT
GTTCAGCAATATAAATCTTGCCAGCTATTGGGGGAAAACCGTAACTTGGT
CTAATGTCAACATTCGCAATCGAATCGAGATAGAAATAACAAAAAAAGAC
GGAGAATCAATCAATAGTGATAAGGGTGACGAAATTAGATGTGGGATGTC
GGCATTAGACGTTACAGTGTTTTCGATAAAGTGGGGTTAAAGTAGTGCCA
TTAGTTTCATAGTCAGCAGGACTAGGCAACTCTAATTTTCAACTTTTGAG
ATATTAGAATGACAATAATTTCCATTCTCAACCTTTTCAAATTTAAATAG
TGTATATTTTTGTGACTTCATTCATATTATATAGAAATTTTGTATTATTT
TTTGTAAAATCTTCGTGACAGAGTTTGAAATCATTTATTTTAAAACAGAT
TGTATCAAAGTTTATTTAGATTGTTAGCATTTAAAAAAGGGGTTTTTTGA
GGTGATATAACTTGTATAAAGTTTTTTTTCTCCGGACTTTTTTGTTTGTT
TGATTTTATTGGTACATTACCACAATGTAATCTTTATCGAGTTTCGTCTG
GTCCTATTTTTAAAATAGTCAATCGTACCTAATGCCATGCTTTATTTTTT
GGAATTAAGTATTGGTAATCGTCTAAAATCGGTCTAGATTTATTAAAATT
CATGAATTGGTAGCATGAGACTGGCACCATGTTGAAAAACATGAAATTTT
ACGATTTTTAGTTAAATTTTTCTTTTATTTTAAACGATATTTCTATTCAT
AGTATCACTTACTACTATTTATGCAGAGCATTTTTGTTTACATTTTAATT
CTTTTGAGATTCATTTTATAAACACAGTTTTTATGCCTTGGAAATCTTAT
TTGTTAAATA Coding sequence (CDS) from alignment at scaffold_192:87441..92050- >TCONS_00051028 ID=TCONS_00051028|Name=TCONS_00051028|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_192:87441..92050- (Clytia hemisphaerica)
ATGCTAGATTTGATCAATCCGATGGAAATTGTTTCATTAGATGGGACATT
ATCAGGGGGTGGTCACCTTCATGTTGGACTAGCAGATTATAGCGGTAAAA
TGATGGGTGGCCACCTGCTGGAGTTGGTTGTTGACACCACAGCTGAGGTA
GTGATAGGAGATTGTAGTTCATTGTCATTTACCAGAACTTATGATCAATC
CACCGGTTTCCATGAGTTACAGGTTTCTGATAGATAAATGGAGAATGGAT
TTTCATCAATCAGAAATAATCCCAGTGGTGGTGCTATTCCCAAAACTGGG
AAAAGTAAATTCTACACAACGGAACTAAGTTTTGAGGATAACTTTGATCC
ATCTAATTATATTCAAAAGAACACTCAACATCCAACAATAAAAGAAGATG
ATTCTTTTACCAAGCCGGCGAACCCAGAACCTGAAAAACAAAAAGAAACT
ATCAATGACATTTCAAGTCATAAAGTTAAACAGTCAGGAAGTCCTCTCAT
GTGCTATGTTGTAAGACTTAAACATGGTGATGAGCTAAGAAAGTCTTTGT
TATCCTTTGTCAAAAAGAATGGACTAAAAGCAGCTTTTATTATGTCTTGT
GTGGGTAGTTGCACATCAGCACGTGTACGCTTGGCGAGTGCTACCCCAGA
AAATGAAGCCAATTATATGCTAGATTTGATCAATCCGATGGAAATTGTTT
CATTAGATGGGACATTATCAGGGGGTGGTCACCTTCATGTTGGACTAGCA
GATTATAGCGGTAAAATGATGGGTGGCCACCTGCTGGAGTTGGTTGTTGA
CACCACAGCTGAGGTAGTGATAGGAGATTGTAGTTCATTGTCATTTACCA
GAACTTATGATCAATCCACCGGTTTCCATGAGTTACAGGTTTCTGATAGA
TAAATGGAGAATGGATTTTCATCAATCAGAAATAATCCCAGTGGTGGTGC
TATTCCCAAAACTGGGAAAAGTAAATTCTACACAACGGAACTAAGTTTTG
AGGATAACTTTGATCCATCTAATTATATTCAAAAGAACACTCAACATCCA
ACAATAAAAGAAGATGATTCTTTTACCAAGCCGGCGAACCCAGAACCTGA
AAAACAAAAAGAAACTATCAATGACATTTCAAGTCATAAAGTTAAACAGT
CAGGAAGTCCTCTCATGTGCTATGTTGTAAGACTTAAACATGGTGATGAG
CTAAGAAAGTCTTTGTTATCCTTTGTCAAAAAGAATGGACTAAAAGCAGC
TTTTATTATGTCTTGTGTGGGTAGTTGCACATCAGCACGTGTACGCTTGG
CGAGTGCTACCCCAGAAAATGAAGCCAATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051028-exon-scaffold_192-1575043694:91547..92050 | TCONS_00051028-exon-scaffold_192-1575043694:91547..92050 | Clytia hemisphaerica | exon |
| TCONS_00051028-exon-scaffold_192-1575043694:90625..91201 | TCONS_00051028-exon-scaffold_192-1575043694:90625..91201 | Clytia hemisphaerica | exon |
| TCONS_00051028-exon-scaffold_192-1575043694:87441..88849 | TCONS_00051028-exon-scaffold_192-1575043694:87441..88849 | Clytia hemisphaerica | exon |
| TCONS_00051028-exon-scaffold_192-1510915933:91547..92050 | TCONS_00051028-exon-scaffold_192-1510915933:91547..92050 | Clytia hemisphaerica | exon |
| TCONS_00051028-exon-scaffold_192-1510915933:90625..91201 | TCONS_00051028-exon-scaffold_192-1510915933:90625..91201 | Clytia hemisphaerica | exon |
| TCONS_00051028-exon-scaffold_192-1510915933:87441..88849 | TCONS_00051028-exon-scaffold_192-1510915933:87441..88849 | Clytia hemisphaerica | exon |
| TCONS_00051028-exon-scaffold_192-1491911889:91547..92050 | TCONS_00051028-exon-scaffold_192-1491911889:91547..92050 | Clytia hemisphaerica | exon |
| TCONS_00051028-exon-scaffold_192-1491911889:90625..91201 | TCONS_00051028-exon-scaffold_192-1491911889:90625..91201 | Clytia hemisphaerica | exon |
| TCONS_00051028-exon-scaffold_192-1491911889:87441..88849 | TCONS_00051028-exon-scaffold_192-1491911889:87441..88849 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_192 | supercontig | scaffold_192:87441..92050 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR005175 | PPC_dom |
Blast
The following BLAST results are available for this feature:
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