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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051041 ID=TCONS_00051041|Name=TCONS_00051041|organism=Clytia hemisphaerica|type=transcript|length=2207bp
CGATTTGGCATACATTTTTATGTTCTTTCTTTATACTCGAAACTTCAATT
TTGAGTTCTTCTAGTGATTGCAAAACTTTCTCCAAAGTTCCTTTCTCTTC
CTCTTCAGGCTTTTTACCAGAGCTAGCTCTATATTGTAACAGAGTTGATT
GAGATTTATTAATAACTTTTTCAGGACGTAATTGTTCATGGGAGGAGTAA
CAGCGTTTTCCTCAGCTGGATCGCTTGCCTGGTTGTCAgatatttatata
tattttcatttcttagTCATTATTGCTCATTTTGTAAGCTCATTTggggt
tccttcctcctggcggtatgatctggtggtccttttgcgggaggaTAGGA
ACCTTTAGatttgtactatttgttcgtgttactatactatagataaaaaa
aagaaaaaaaaagaaagatatttctGTTTCTACGGCAATGGGGGTTACAG
GAATAGATTTTTGTGTatgatttaaattttctttctcttaGACAAAATGC
TTCGAGCCTCTAACGATTCTGCTGGTACGATTGTACAATTCTTCTGCACT
TGGTGCCACCTACTTTTATGCCTGTTTACACTAGTGTTGTCTTTCCTACA
AAGTTTTGCAGTTGATACGTCACGATCACTATTGTCACCACACGCCAATC
TCAAACATTCTAAACACACGAACTTCGAGTTCGACTGCTCTTTTGGTTTT
TCACGTACAGCTTTTTTCTCCACTGGAGCCTCACTACTGGATGAGCCTGT
CCACAATTCAAGAGCATTCGGTCGAAACAGTAGGACTTTTtgctacaaaa
taaaaaatatttaaaggttCCTGTTAGTTGGTCCTGTTAGTTGGTCCTTT
TATAATATAGTAATATTAGAAATTAACCCCTTGTTTTTATCTTATCTTTA
AAGATCAGGGATAGCAAACCATAAGGATGTTGATCATTTCGATGAAACGA
AACCAAACGAGCACCTCATTTATCTGGATGCCAACAACTTATATGGTTGG
GCCATGAGTCAACATCTACCAACGGGGAATTTCAAATGGCTTACTAATGC
AGAGATCGAACGAATTGACGTTGAAACAATTACAAATTTACCCGATGATA
ATGATCAAGGTTACATTTTGGAAGTGGATTTAGTTAAAATTGCTTGGCGT
AAAATCAACAGATGAAGTCAAACTACCTAACATCAAGAAGCTCATCCCAA
ATCTATACAACAAAGAAAAGTATATCCTTCATTacagaaatttgaaattt
tatctcTCGCAAGGttcaattttaacaaaaattcatcgtgtcttaaaatt
ttcacaaaaaccaTGGTTAAAGCAATACATTAATTTTAATACACATCGTC
GCAGTTTAGCACGTAATGAATTcgaaaagaacttttttaaacttaTGAAC
AATTCGTGCTTTGGTAAAACTATGGAGAACCTTCGACAACGACGAAACAT
TGAAGTTGTTCAAGATCGTCAAATCCTTCATAAACGTGTGGCACAACCAT
CATTTAAAGATTTCAAGATTGTTAACGATAACTTCATCATAATAGAACGA
AAGAAGAAAACCGTATTACTTAACCGTCCGATATACACTGGATTCTGCAT
CCTCGACCTTTCAAAGATACACATGTATGACTTCCGTTATAACCATATCA
AGAAGTTATATCCTGTGAACCNGAAGAAAACCGTATTACTTAACCGTCCG
ATATACACTGGATTCTGCATCCTCGACCTTTCAAAGATACACATGTATGA
CTTCCATTATAACCATATCAAGAAGTTATATCCTGCGAACCAATCAAAGC
TTTTATTCACAGACACGGATTCACTTGCGTATGCAATTAGAACTGAAAAT
GTTTACGAAGATATGTTACCACATAGTCACTTATACGATTTTGCAAATTA
TAAAGAAGATCATCCAAATTACTCACCTGTGAACAACAAAGTCATCGGGA
AATTCAAGGATGAATTGGAAGGGGTACCTTTACAGGAATTCATAGGATTA
AAGGCCAAGATGTATGGTATGCAGTATAAGAAGAAAGGAGAAATTCAAAA
CGATAAGAAAGCAAAGGGAGTAAAGAAATCGGcaataaaacataaaatta
cACATCAAGATTATAGAAATGCACTATTCAAAAACGATGTAAAATATTGT
TCAGCCATGTATTTTCGCTCCTCTAGACATCAAATAAACGTTACATTTTA
GAGGATA Run BLAST on NCBI protein sequence of TCONS_00051041-protein >TCONS_00051041-protein ID=TCONS_00051041-protein|Name=TCONS_00051041-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MNNSCFGKTMENLRQRRNIEVVQDRQILHKRVAQPSFKDFKIVNDNFIII
ERKKKTVLLNRPIYTGFCILDLSKIHMYDFRYNHIKKLYPVNXKKTVLLN
RPIYTGFCILDLSKIHMYDFHYNHIKKLYPANQSKLLFTDTDSLAYAIRT
ENVYEDMLPHSHLYDFANYKEDHPNYSPVNNKVIGKFKDELEGVPLQEFI
GLKAKMYGMQYKKKGEIQNDKKAKGVKKSAIKHKITHQDYRNALFKNDVK
YCSAMYFRSSRHQINVTF Run BLAST on NCBI transcript from alignment at scaffold_193:78509..80907+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051041 ID=TCONS_00051041|Name=TCONS_00051041|organism=Clytia hemisphaerica|type=transcript|length=2399bp|location=Sequence derived from alignment at scaffold_193:78509..80907+ (Clytia hemisphaerica)
CGATTTGGCATACATTTTTATGTTCTTTCTTTATACTCGAAACTTCAATT
TTGAGTTCTTCTAGTGATTGCAAAACTTTCTCCAAAGTTCCTTTCTCTTC
CTCTTCAGGCTTTTTACCAGAGCTAGCTCTATATTGTAACAGAGTTGATT
GAGATTTATTAATAACTTTTTCAGGACGTAATTGTTCATGGGAGGAGTAA
CAGCGTTTTCCTCAGCTGGATCGCTTGCCTGGTTGTCAgatatttatata
tattttcatttcttagTCATTATTGCTCATTTTGTAAGCTCATTTggggt
tccttcctcctggcggtatgatctggtggtccttttgcgggaggaTAGGA
ACCTTTAGatttgtactatttgttcgtgttactatactatagataaaaaa
aagaaaaaaaaagaaagatatttctGTTTCTACGGCAATGGGGGTTACAG
GAATAGATTTTTGTGTatgatttaaattttctttctcttaGACAAAATGC
TTCGAGCCTCTAACGATTCTGCTGGTACGATTGTACAATTCTTCTGCACT
TGGTGCCACCTACTTTTATGCCTGTTTACACTAGTGTTGTCTTTCCTACA
AAGTTTTGCAGTTGATACGTCACGATCACTATTGTCACCACACGCCAATC
TCAAACATTCTAAACACACGAACTTCGAGTTCGACTGCTCTTTTGGTTTT
TCACGTACAGCTTTTTTCTCCACTGGAGCCTCACTACTGGATGAGCCTGT
CCACAATTCAAGAGCATTCGGTCGAAACAGTAGGACTTTTtgctacaaaa
taaaaaatatttaaaggttCCTGTTAGTTGGTCCTGTTAGTTGGTCCTTT
TATAATATAGTAATATTAGAAATTAACCCCTTGTTTTTATCTTATCTTTA
AAGATCAGGGATAGCAAACCATAAGGATGTTGATCATTTCGATGAAACGA
AACCAAACGAGCACCTCATTTATCTGGATGCCAACAACTTATATGGTTGG
GCCATGAGTCAACATCTACCAACGGGGAATTTCAAATGGCTTACTAATGC
AGAGATCGAACGAATTGACGTTGAAACAATTACAAATTTACCCGATGATA
ATGATCAAGGTTACATTTTGGAAGTGGATTTAGGTATAAAATTTATCTGC
TTTAAAGAATTCATCAACTCTTCATTCTCACACATGAAAAATGATTTAGA
TTTTGTTACATCATCTAAGAATTAACTAGCTGTCATTTTTCAGGGTAGAA
AAGTTATTATCTTTCTAAACTATTTTCATTTCCTTTATCTTCTTAGAATA
CCCTGATATGCTTTCACCGACACAGTTAAAATTGCTTGGCGTAAAATCAA
CAGATGAAGTCAAACTACCTAACATCAAGAAGCTCATCCCAAATCTATAC
AACAAAGAAAAGTATATCCTTCATTacagaaatttgaaattttatctcTC
GCAAGGttcaattttaacaaaaattcatcgtgtcttaaaattttcacaaa
aaccaTGGTTAAAGCAATACATTAATTTTAATACACATCGTCGCAGTTTA
GCACGTAATGAATTcgaaaagaacttttttaaacttaTGAACAATTCGTG
CTTTGGTAAAACTATGGAGAACCTTCGACAACGACGAAACATTGAAGTTG
TTCAAGATCGTCAAATCCTTCATAAACGTGTGGCACAACCATCATTTAAA
GATTTCAAGATTGTTAACGATAACTTCATCATAATAGAACGAAAGAAGAA
AACCGTATTACTTAACCGTCCGATATACACTGGATTCTGCATCCTCGACC
TTTCAAAGATACACATGTATGACTTCCGTTATAACCATATCAAGAAGTTA
TATCCTGTGAACCNGAAGAAAACCGTATTACTTAACCGTCCGATATACAC
TGGATTCTGCATCCTCGACCTTTCAAAGATACACATGTATGACTTCCATT
ATAACCATATCAAGAAGTTATATCCTGCGAACCAATCAAAGCTTTTATTC
ACAGACACGGATTCACTTGCGTATGCAATTAGAACTGAAAATGTTTACGA
AGATATGTTACCACATAGTCACTTATACGATTTTGCAAATTATAAAGAAG
ATCATCCAAATTACTCACCTGTGAACAACAAAGTCATCGGGAAATTCAAG
GATGAATTGGAAGGGGTACCTTTACAGGAATTCATAGGATTAAAGGCCAA
GATGTATGGTATGCAGTATAAGAAGAAAGGAGAAATTCAAAACGATAAGA
AAGCAAAGGGAGTAAAGAAATCGGcaataaaacataaaattacACATCAA
GATTATAGAAATGCACTATTCAAAAACGATGTAAAATATTGTTCAGCCAT
GTATTTTCGCTCCTCTAGACATCAAATAAACGTTACATTTTAGAGGATA Coding sequence (CDS) from alignment at scaffold_193:78509..80907+ >TCONS_00051041 ID=TCONS_00051041|Name=TCONS_00051041|organism=Clytia hemisphaerica|type=CDS|length=807bp|location=Sequence derived from alignment at scaffold_193:78509..80907+ (Clytia hemisphaerica)
aTGAACAATTCGTGCTTTGGTAAAACTATGGAGAACCTTCGACAACGACG
AAACATTGAAGTTGTTCAAGATCGTCAAATCCTTCATAAACGTGTGGCAC
AACCATCATTTAAAGATTTCAAGATTGTTAACGATAACTTCATCATAATA
GAACGAAAGAAGAAAACCGTATTACTTAACCGTCCGATATACACTGGATT
CTGCATCCTCGACCTTTCAAAGATACACATGTATGACTTCCGTTATAACC
ATATCAAGAAGTTATATCCTGTGAACCNGAAGAAAACCGTATTACTTAAC
CGTCCGATATACACTGGATTCTGCATCCTCGACCTTTCAAAGATACACAT
GTATGACTTCCATTATAACCATATCAAGAAGTTATATCCTGCGAACCAAT
CAAAGCTTTTATTCACAGACACGGATTCACTTGCGTATGCAATTAGAACT
GAAAATGTTTACGAAGATATGTTACCACATAGTCACTTATACGATTTTGC
AAATTATAAAGAAGATCATCCAAATTACTCACCTGTGAACAACAAAGTCA
TCGGGAAATTCAAGGATGAATTGGAAGGGGTACCTTTACAGGAATTCATA
GGATTAAAGGCCAAGATGTATGGTATGCAGTATAAGAAGAAAGGAGAAAT
TCAAAACGATAAGAAAGCAAAGGGAGTAAAGAAATCGGcaataaaacata
aaattacACATCAAGATTATAGAAATGCACTATTCAAAAACGATGTAAAA
TATTGTTCAGCCATGTATTTTCGCTCCTCTAGACATCAAATAAACGTTAC
ATTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051041-exon-scaffold_193-1491911889:78509..79641 | TCONS_00051041-exon-scaffold_193-1491911889:78509..79641 | Clytia hemisphaerica | exon |
| TCONS_00051041-exon-scaffold_193-1510915933:78509..79641 | TCONS_00051041-exon-scaffold_193-1510915933:78509..79641 | Clytia hemisphaerica | exon |
| TCONS_00051041-exon-scaffold_193-1575043694:78509..79641 | TCONS_00051041-exon-scaffold_193-1575043694:78509..79641 | Clytia hemisphaerica | exon |
| TCONS_00051041-exon-scaffold_193-1491911889:79834..80907 | TCONS_00051041-exon-scaffold_193-1491911889:79834..80907 | Clytia hemisphaerica | exon |
| TCONS_00051041-exon-scaffold_193-1510915933:79834..80907 | TCONS_00051041-exon-scaffold_193-1510915933:79834..80907 | Clytia hemisphaerica | exon |
| TCONS_00051041-exon-scaffold_193-1575043694:79834..80907 | TCONS_00051041-exon-scaffold_193-1575043694:79834..80907 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_193 | supercontig | scaffold_193:78509..80907 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR023211 | DNA_pol_palm_dom |
Blast
The following BLAST results are available for this feature:
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