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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051067 ID=TCONS_00051067|Name=TCONS_00051067|organism=Clytia hemisphaerica|type=transcript|length=347bp
GGAGGAGTGGACACATCGAGTACTGTCTATTCTCTTGCCGAAGAGGGTTC
ACACCATCAGCACAAAATGACAAACCAACACCTAACAAAACAGGTGATGC
TATTGAGAGCCCCAAACCAATatgatgaaaaagtgaaaattaatttctta
cCGATGCGTCCACGAAACGCACCATCTTCACTAAACCATTCAACATTCCA
GGCCGCTGTATCCTGGATATCAGCTACGAATTCAATTGGTCGTTCTGGAA
CCTctagatatttttttaaagattcggaGCCATATAACCTTGCAATCTGT
GGCCCGAGcggaaagtttttaaaaattcgcTTTGGTCTACCATTAGG Run BLAST on NCBI protein sequence of TCONS_00051067-protein >TCONS_00051067-protein ID=TCONS_00051067-protein|Name=TCONS_00051067-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
GGVDTSSTVYSLAEEGSHHQHKMTNQHLTKQVMLLRAPNQYDEKVKINFL
PMRPRNAPSSLNHSTFQAAVSWISATNSIGRSGTSRYFFKDSEPYNLAIC
GPSGKFLKIRFGLPL Run BLAST on NCBI transcript from alignment at scaffold_193:65751..67923- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051067 ID=TCONS_00051067|Name=TCONS_00051067|organism=Clytia hemisphaerica|type=transcript|length=2173bp|location=Sequence derived from alignment at scaffold_193:65751..67923- (Clytia hemisphaerica)
GGAGGAGTGGACACATCGAGTACTGTCTATTCTCTTGCCGAAGAGGGTTC
ACACCATCAGCACAAAATGACAAACCAACACCTAACAAAACAGGTTCAAA
TTTCACTCCTTAATATCGTTATTTATCACGTCAGAGCCTGGGTTTAGGTC
CTAGGCACAAATTAGTTTTGAGTTTTAAGTTCTCCCAAAGATCATTCACC
AAACAAATTGTTCCACCAAAAATGGTTATTCAATTGCGATTAAGGGATAG
AAAATTAAAACATGTCCCAAATTACCTTAAGTGGATAAATTTTTGCGTGT
ACTAATTTTCGCGAGACGAGAATTTAAAGATTTCGCGTGGATTAAATTTC
ACGAATCAAGGGTCTTTAAAATTTTCGCATGGATTAAATTTCGCGAAAAT
GGCCTTCTTTATTTAATTTCACGACTATATAAATTGTAACTAGAAAAGAA
ATGTGTGTTTTTTAATGGAACAAAGGCAGAAAAAGGCACTCAGAAGCTTT
CAAAAAATTTAAAAGAAAGTACTTTTAGGAGATTACTAGAGTTTATTATT
GAAATGAAGAGTTGAACTCGTAATATGTTTTGATTGTAACATGTTTTCTA
AAGTCTATTCACGATAAGTGTGCACTCACAGTGATGACGTTCGACGATCA
AGGATTCACTTCAGTGAAAATGATAGTTATAGCACTTTTCTACAAGATCT
TAATTTTTTTCTTCTTCATTTTCTTCTTCATTTTTAGAATTTTTAAATTT
TTTTTTTTATTTCAACTTTATAAAGATTGAAGAATTCCTTCAAAAGTTAT
AGGTAATGAAAAAAAACGAAAACGAAAACGGCCAAAATTCGCGAAAACCG
CTAAAATTAATCCGCTCGAAAATTTATCCACTTAAGGGGTCAAGAGGATT
TTCCCTTTTTAATTTCATCCAATTTCAACCACTTTTAAAATTCCTCAAAC
AAAACAAGTATAAGTAATTTTGTTTTTCTACAGGTGATGCTATTGAGAGC
CCCAAACCAATATGATGAAAAAGTGAAAATCAATTTCTTACCGATGCGTC
CACGAAACGCACCATCTTCGCTAAACCATTCAACATTCCAGGCCGCTGTA
TCCTGGATATCAGCTACGAATTCAATTGGTCGTTCTGGAACCTCTAGATA
TTTTTTTAAAGATTCCGAGCCATATAACCTTGCAATCTGTGGCCCGAGCG
GAAAGTATTTAAAAATTCGCTTTGGTCTACCATTAGGATATCTTCTATCT
TTTCCACACAAAACACATTGGTCTTTCTCTGAATGCTCTCCACGGAACAA
CATGCAATCATCAACACATACATCGTACGTTTCAAGAGGGAGCAAAAACG
GCTCGATCAATTTGTACGCTTCCTCGTAAGAACTCGGCATGTTATTTGGC
TTTGGAAGGACGTGTTGGTGATCATTCCGAAATATTTCCGACAGCTCAGC
TTTTGACGACGTATGGCCCACAAATGTTCTTATTTTAAGAAAGATCGCTT
CCAAAACCGTTAACTCGGAGCCAGGGTAAAGCTTTGTTTTGGCAACGTCT
GATTCTGTGTACAAATCTTCGTTGAAATGAACGGTTCGTCGATATTCATG
GTTTCGCAAAGTATCAAGCCTATCCGATTTCAAAGTGGCGTAATCTTTCT
CCATGTGGCGTCGAACCGTTTTTGTTGAAACCANTTTTTTTTTTTATTTC
AACTTTATAAAGATCGAAGAATTCCTTCAAAAGTTATAGGTAATGAAAAA
AACGAAAGCGAAAACGGCCAAAATTCGCGAAAACCGCTAAAATTAATCCG
CTCGAAAATTTATCCACTTAAGGGGTCAAGAGGATTTTCCCTATTCAATT
TCATCCAATTTCAACCACTTTTAAAATTCCTCAAACAAAACAAGTATAAG
TAATTTTGTTTTTCTACAGGTGATGCTATTGAGAGCCCCAAACCAATATG
ATGAAAAAGTGAAAATTAATTTCTTACCGATGCGTCCACGAAACGCACCA
TCTTCACTAAACCATTCAACATTCCAGGCCGCTGTATCCTGGATATCAGC
TACGAATTCAATTGGTCGTTCTGGAACCTCTAGATATTTTTTTAAAGATT
CGGAGCCATATAACCTTGCAATCTGTGGCCCGAGCGGAAAGTTTTTAAAA
ATTCGCTTTGGTCTACCATTAGG Coding sequence (CDS) from alignment at scaffold_193:65751..67923- >TCONS_00051067 ID=TCONS_00051067|Name=TCONS_00051067|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at scaffold_193:65751..67923- (Clytia hemisphaerica)
GTGATGCTATTGAGAGCCCCAAACCAATATGATGAAAAAGTGAAAATTAA
TTTCTTACCGATGCGTCCACGAAACGCACCATCTTCACTAAACCATTCAA
CATTCCAGGCCGCTGTATCCTGGATATCAGCTACGAATTCAATTGGTCGT
TCTGGAACCTCTAGATATTTTTTTAAAGATTCGGAGCCATATAACCTTGC
AATCTGTGGCCCGAGCGGAAAGTTTTTAAAAATTCGCTTTGGTCTACCAT
TAGGAGGAGTGGACACATCGAGTACTGTCTATTCTCTTGCCGAAGAGGGT
TCACACCATCAGCACAAAATGACAAACCAACACCTAACAAAACAGGTGAT
GCTATTGAGAGCCCCAAACCAATATGATGAAAAAGTGAAAATTAATTTCT
TACCGATGCGTCCACGAAACGCACCATCTTCACTAAACCATTCAACATTC
CAGGCCGCTGTATCCTGGATATCAGCTACGAATTCAATTGGTCGTTCTGG
AACCTCTAGATATTTTTTTAAAGATTCGGAGCCATATAACCTTGCAATCT
GTGGCCCGAGCGGAAAGTTTTTAAAAATTCGCTTTGGTCTACCATTAGGA
GGAGTGGACACATCGAGTACTGTCTATTCTCTTGCCGAAGAGGGTTCACA
CCATCAGCACAAAATGACAAACCAACACCTAACAAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051067-exon-scaffold_193-1575043694:67831..67923 | TCONS_00051067-exon-scaffold_193-1575043694:67831..67923 | Clytia hemisphaerica | exon |
| TCONS_00051067-exon-scaffold_193-1575043694:65751..66004 | TCONS_00051067-exon-scaffold_193-1575043694:65751..66004 | Clytia hemisphaerica | exon |
| TCONS_00051067-exon-scaffold_193-1510915933:67831..67923 | TCONS_00051067-exon-scaffold_193-1510915933:67831..67923 | Clytia hemisphaerica | exon |
| TCONS_00051067-exon-scaffold_193-1510915933:65751..66004 | TCONS_00051067-exon-scaffold_193-1510915933:65751..66004 | Clytia hemisphaerica | exon |
| TCONS_00051067-exon-scaffold_193-1491911889:67831..67923 | TCONS_00051067-exon-scaffold_193-1491911889:67831..67923 | Clytia hemisphaerica | exon |
| TCONS_00051067-exon-scaffold_193-1491911889:65751..66004 | TCONS_00051067-exon-scaffold_193-1491911889:65751..66004 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_193 | supercontig | scaffold_193:65751..67923 - |
Blast
The following BLAST results are available for this feature:
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